Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0569800.1

Overview

Field Value
Gene ID LotjaGi1g1v0569800
Transcript ID LotjaGi1g1v0569800.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description RNA binding protein, putative; TAIR: AT1G76460.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q9M1S3|ARP1_ARATH Probable RNA-binding protein ARP1; TrEMBL-Plants: tr|I1K789|I1K789_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0569800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:110252764..110259426) extracted from Lotus japonicus Gifu genome v1.2.

CATATGAGCACCATCTCAGGCTGTCCGGTTGGGTTGGGAAATGCGAAGTCTCGAAGAAAACACGAGTCAGTGACTCTGGC CTGGCCCTGCCTTTTCTTTTTCCTCAATTTCCCCCATTTTCTCTCTCTCTCTCGCCGTCAGTTACTCCTCCTCTTCGCTG TCGTTTCAATTCATTCCTGCTTCTTCTCCTTCAAATCCAAAATCCTAAATCAATCACAACATGAATCACTCCCACTCTCC TCCCCCTACATCATCATCATCATCACCATCACCAACAACCATCATCATTCATTGATCCCAAAACCAAAAACACACCCTCT TCTTCTTCTTCCACTGTATATACTACTACTACTACTTAAGATTCTTTTTACTCTTACCACCATCATCACACCATCCTATT CCTTTTCCCACCACCCACCTTTCTCAATTCTAGGGTTTTCACTTTTCACTTTCATTTCGTTAGGTTTCCTCCTCCGTCAC CCTCTCTCTCTCTCTCTCCACTTCATGTGGATACTTGTTCCTCTGCTTATGATCTGAATTCAGTACGATTGATTTCTGTA TTCATTGTAATTGGGGTGAGGGGGAGAGTGGTGATTGATTGATTGATTGTTGATTAATGGCGTACCAGGCGATTCAGGGT TCGAGTTCAGGATCGAGTTCGGGGTTTCAAATGGTGAATTCTCCGTTCGGTGACACCACTTTCACCAAGGTCTTCGTTGG TGGATTGGCTTGGGAGACTCAGAGTGAAACCATGCGTCGTTACTTTGAGCAATTCGGGGAGATTCTTGAGGCGGTTGTGA TCACTGATAAGAACACTGGGCGATCCAAAGGCTATGGTTTTGTGAGTATTTTTGTTATTCCATTTTTCTCCTTTATTCTG CATGTAGAATGACTGGGTTTGTATCTCATCTGCATGGAATTGGAGGGTATAGGTGACTTTCCGGGATCCCGAGGCTGCAA GGAGAGCCTGTGCTGATCCAGCTCCTGTCATTGATGGTAGAAGGGCTAATTGTAACTTGGCTTCACTTGGTCGACCACGC CCACCTCTTCCCTATGGTATGGTATTATTGAATTTCTTAACTATGCCTAATTGCTTGTTTGAAAATTCTTACAATTAGTT CTAAAGTTAAAATCAATTTTAGAGAGAAATTTGTGAGAGTACTAGTAGCTGAAATGCTTGAATTATAATGAGAAAAGAGA AGTTAATCAAGTGTGGATTTCCGTGCTTCCAGACTCTGGTTTTAGGGGAGAATTGAATTGATTGATTCAGACACTATGAT TGATACATGTTATGAGGGGCATGCTAAAATTTAATTGTGAACTCGGGTTTTTACATTGACTGATTTTTATATCATTTAAT TATGTCACTTCAGCATTATTGTCGTTTGTGGTTCTTATTGTTATTCATTATTATTGGAATGGAATCCCGCACTGGCATGC CTCTGTTATCCATTTCTCTATTATTCATTGTATATCTCCTGCACTGTTAAGTTTACTTTTCTAACCTGCTGCGTTCATCT GAAAAAAACAAACTTATTCTTGTATTAATTACTCCAACCATATCTACCTTCCATACATTTCATTTGTCTGTTATCACAAC ACAGGTCACATCTATGACATAACTTTATTCTCTTCCTTTCTCATTGTGTTGATTTTGGGTGTCTGAAACCATGGATAATA TCTCCTAACCATTACTGTTCTTGTATAAAATGAAAGGCCTGGGTAATTTATGGACCGCAATTAATTATTAACTTATGTTC CTGTCCTGTCACGTGAAATGGAATCTGTCTTTTAAACAGTCTTTTGGTTTTGCTTCAACAATTTTGTTTAACTCAAGCTA ATATTTTTCTGTTCTTGACATGTTTAGAAGTCTGCTGTAGCGTAAGCATTTTATGTTACAGTTCTTACCTACTTTCATCT TTTGATTGCTTCTGTTGTCCTTTTGTAGGTCGGATAAGACCAGCCTCCCATTATGTTGGAAGTTTGCAACCAGCACGTGG TTCTTATGTTGGAGGTTTTGGCTACCAGCAGCAGCCACTTTCCTACGGCTATCAACAAGGATTGGTATATCCTCCTTATG GGTAAGTGGGCTGACGTTGCACATCACTGCAAACTTAGAAGATGTAATTTCAATGCTCATAAATATTCTCTCGTCTTTTC TTGATAATTGTAAGTGTTAATACTTCCTACTTTAATATCTGTAGTATTGCTATTACTACACTCATCATCAACTCATATTT TTTTGTGACTGTTAAATAATGGTGATCTGATGACCATTAAGGTCAAGTAGACGCATATCCATGCAAGGGCCTGTTTAATC CTCATTATTTCTTTCTGTGGCAATCTACACAACTGTGGCAATCTACACAAACCAATCCCAACACAGTATCCTCGTGGTAG TGGTTAGTTAGGAGGGAAAAATCTCGAGAGTGAGGGATTTGGTCATTACTTGTCCATTATATCAGGAGAACCTATTTCAA TTAGATTTCATAAACTTATTTATCTCCATGCGTGTGACATGTTCCTAACTACATTTGCATTGTGCATCAGGATGTATTAC ACCAGAATCATGCTATAGAGGTGATCTTTTCAACATTATGTGGTTGTTTTATCTTTGCAGGTATACGACGTATGGACCTG AATACATCTACCCACAGGTCGATTGTTTTTTCTTTTAAAATTGGCTTAAGAAGAATGTTATATTTTTGTGTGTATTGCTG ACATTTTAACCTTCTGCTATCTTGTCTAATAGAATGTGTACAACCCATATGTGGGTCAGCAGTACCTTCAGATATATGGA GTGCCTGGGGCAGTGAACACTACTGTTTATCCTTATGGACAATTGGGTCAGACTATTCCTAGTGGTCACGGTTATACAGC AATGCCAGGTTATACTGTACCAGCTCATCAGATTGTGCCGTACGGCGGATCCAGTGTTAATTCCATAACAACTTCACCTA TGCCTGCCATTCAAGCATCATATCCTAGTGGTATAGTTATCTGCTCTGAAGAATCACTATTTTTGACTTAAGCTCTGCCT TTTTGTTGCCTTCGGAACATGCATTTTACTTTTAAAATGTCTCAATTTTAATTCATGCTGCCTTACTTTTCCTGTCATTG AAAGACTGCTAATTCATATTTGATGTAGTATCAACATCCATCTTCGGTGGGCATTCTTTGAGAAACAAATGCCCATATGT ATTGGAAATGACATCCCTTAGAAAACACTTCAGCAAGTAATCATTTAAGTCTTAACAAGCATTGACATGTCAAGACTGCA TAGACTCCTGCAACGAGATTAATAGATTTATCAAATGCATATGTATGCAATTAGAGCTGTCAAACCTAGAATTATGTACA AGATTAGGAGTATAGTACTTTTTAATTGAATGTGGAAGTTTTTGATGAAAAAGGGTAAGTTTTTTTTTTGACAGTAAAAA AAAAGAAAAAGAAAAAAAAGGGTAAGTTGTAGTTGTGGTGGATGGCTAGCAACAAACCTGTAAAGAATAAGTTATACTTG TTTCATATGGAGAATTGTTATAAAATGTATATATAGAATGAGGCGTTAAAATACCCATACCACATCTTTTACAAGTGTGT TGGCTCTTTCAGGAATAGCTTCACCAGTTCCAGGCCAACCCCAATTTATTGTTCCTGCTCCTTCTCAATTTATGCAAGGT GGTGGTCATGACCAAACAGCCGGGTGAGGGGACGAATAAGGTTTGGGCTCTTCACCAGCATCTTAATCTCCTTGTCTTTT ATGTCCAGCATGAATTTATGTTTTGAAACTACTCTGTTGCAGATATCCATAGTTTGCAGCAGGTCTAAGAGCAGTGGAAC TCTACTTGAGTGGCAGGCTTCCAATCTAGCCTTGCAAGTTAATTATTCTGCATTCTAGAGGTTTGTTGCTTTGCTTACAT TGCCTTAATGACAGATGTTAGAAATGATTAAAGCTGAACATGAGCATATTGTAAGTTTTTTTTTTGGCTCAGGAAGCAGA GCTTATGAGCCATTGAAATATATTTGGCTACTTATATGTTTATAAGTCTGTTTTCCTGCTTTTGTTTTTTCAGTTTGTAT TCGATGCACCAAAAAGTAAAAACAAAACACAATTAAGCCAAACTTTGAGCTGAGTAGCAGCTTGAAAGGTTGAGTGACTC ATGAACTGAGTAAAAATTTCATGAACTAACCTAGGCTCATTTCCAGCCGTACTTAATTGCAAAGTTGGCTGAGCACCAAC GACGAGCACCAATCCTTACCGCTGTTTTTAAGTAAAAACAGGAAAAATATAATTTTAGTGGTGCCAGCTTGAGGAGGCAT AAAAATAGAATCTCGGTGATCATAATTGCTTGACCGAATAACCTGTAACAATGATATAAATACCATTGAAGAATGAATAG AATTCATCGCTTTCTGCATTCTTTTCAGTTTTTACTTCACACCAAGCTTCCAATATTGACCTTGACCATGGCCTCCCTCC CTCCTCCCCTTGCATCATTTTTCCTTTATTTTCTTTGATTACCATGACCATAGCCAATCATATTGATGTAAACACAAAAT GCACACCATTTTCGTGTCATAATTATTTTAAATACAATCTAACGTATCCTTTTTGGCACAATGGTCAACCGGATAACTAT GACATATTGATGTAGACACATAATGCAGTGTCATAATTATTTGAATACAATCTAACGTATCTTTTTGGTAAAAAATGATA CGTTGGATTGTATTTAAAATAATTATGACACGAAAATGGAGTGCATTCTGTGTCTACATCAATGTGATTGGCTATGGTCA TGGTAATCAAAGAAAAATAAAAGAAGAAGATGCAGGGAGAGAAGGGAGGGAGGCCATGGTCAATATTGGAGTTTTGACGT GAAGTAAAACTGAAAAGAATGCAGCGATGAATTCAATGGTATTTATACCATTGTTGCAGGTTATCCTGTCAAACAATTAT GACCACTTAGATTATATTTTTATGTCCCCTCAAGCTGGTACTAAAATTATATTTTTTTTGTTTTTACTTAAAAACAGCTG TAAGGATTGTTGCTCGTCCTTTCTGTTTCGCTGGTGCTCTGAATTATAATATTGCAAAGTTGGCTCTGAAATATGGTTTT GGACTTTCCCAACTCCAAACCTGTCATGCACTTAGCAATTGGAAAATGTCTAAGTGGATTTTATCAAAAGCTATTTAGAC ACAAGTTTATTGATGTGCAATTTACTCTTTTTGTATCTTAAATGACACAGGGTCTTGCAGTAGTATTTAGCCTTCTGTTA TATACTGCTACACTTCATTTCAGCATCCTTCTATTGCTTTCGATTAGCACGATTAACATCATAAAGGTTTAATTTTTGCT TACCAAATACAGGAAGTTGTATCCCTAAATGGATTGTTCTGTGTTAGTATGAAATGGAAAACATTGGCATTGGAGCTCTT AACAAATTTGCTATGGTGCAGGTCATATATAGTCATGCTCACCAAGCTGTGTTCGAGTCGCTTCGATGGCAAAGGAAATT GGAACATGTTCACACTAGTGTATTTATACCTAATACTACCCGTACTCAGGAAGAGTGGCGGCAGTATTGGATCAATGGGT GTTGGAATGGGTTTCTGGCAGCCATGTAGTAATAAACTTGTGTAAAAAGAAAATGGTGTCCGAATCAAAATATGATTCTT TGTAGTCTTGTCCAGCATTGGGTTTGTAGATAGTTGTCAATGTTAGTGAATTGTGTGGCGATGGAGGGTCCATCACATTG AATGTAATTTTTGTGCATAGTAGTTGTCATAGGTTCTACAAGAAGACAGGGGTGTAATTTTATTATTTCAAAAACCTGCC GTTTATGCAGGGTAGAACCATCAGTATTTTCCATTGGAGAAGGTTGCAGTGGTTCTATGATGTTATATATTACCTTCATT CAGCATGGTCATATGATAAAACATTTTCTTCAATTCTTTAAGGTGCTCAACAGTAGTCATTAAACTGTATATTTTCTGAT TTCTCTTGACATGTCAACTGCTTTTTAATATCCACCAATTATGGTAATTCAATCGTCTAATTGTTGGTGATCCAATTTGG TTGGAATTACTAGAGCCAGTTGCCTAAGAACGGTTTCTATCTCTGGTTATATCATAATTAACATAATCCTTATGCTATGA TTGTTTGTAAGTTGTAACTATAGGGGTTATTCGCTAATTATTTTCCACTTTGGTACGAGTTTTTTTTGCTTATACATATT TTGCTTATTATGCATAGTGAAATTTAGTTAAAATACCTGTGATCAATGTTTTTCTTGGTTTAGCTCATTATTTTGATTCT CATTGTTGTCAGCAAGGTAAATCAAGTTGGAGGTGCTCAGGTGCAGCCACTGATATCACATGTGATCAATATTTTTGTTG GAGTAAATTTCATTTGTAATAGAGCTGATGAAACTTCGGTTAGTATGTGATTTCGGTCTTCTTAGAGCTAATCAAGCTTT TGAAGCTGCTATATGGAACGAAAGATCATACATATTGCATTAGTGAAAATGGACCAACCGGTGTGGTTTCCGGTCCCTCA TCTCTTAATTTTCCTTAATGCTGCTCACTGGCTCCACTACTCAGCCACAAACTTTTCTATCTCTCCTTCTGCACAATGGT TCCTGCTCCATCGCAACTGTTAC 

CDS sequence (LotjaGi1g1v0569800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGTACCAGGCGATTCAGGGTTCGAGTTCAGGATCGAGTTCGGGGTTTCAAATGGTGAATTCTCCGTTCGGTGACAC CACTTTCACCAAGGTCTTCGTTGGTGGATTGGCTTGGGAGACTCAGAGTGAAACCATGCGTCGTTACTTTGAGCAATTCG GGGAGATTCTTGAGGCGGTTGTGATCACTGATAAGAACACTGGGCGATCCAAAGGCTATGGTTTTGTGACTTTCCGGGAT CCCGAGGCTGCAAGGAGAGCCTGTGCTGATCCAGCTCCTGTCATTGATGGTAGAAGGGCTAATTGTAACTTGGCTTCACT TGGTCGACCACGCCCACCTCTTCCCTATGGTCGGATAAGACCAGCCTCCCATTATGTTGGAAGTTTGCAACCAGCACGTG GTTCTTATGTTGGAGGTTTTGGCTACCAGCAGCAGCCACTTTCCTACGGCTATCAACAAGGATTGGTATATCCTCCTTAT GGGTATACGACGTATGGACCTGAATACATCTACCCACAGAATGTGTACAACCCATATGTGGGTCAGCAGTACCTTCAGAT ATATGGAGTGCCTGGGGCAGTGAACACTACTGTTTATCCTTATGGACAATTGGGTCAGACTATTCCTAGTGGTCACGGTT ATACAGCAATGCCAGGTTATACTGTACCAGCTCATCAGATTGTGCCGTACGGCGGATCCAGTGTTAATTCCATAACAACT TCACCTATGCCTGCCATTCAAGCATCATATCCTAGTGGAATAGCTTCACCAGTTCCAGGCCAACCCCAATTTATTGTTCC TGCTCCTTCTCAATTTATGCAAGGTGGTGGTCATGACCAAACAGCCGGGTGA 

Protein sequence (LotjaGi1g1v0569800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAYQAIQGSSSGSSSGFQMVNSPFGDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRD PEAARRACADPAPVIDGRRANCNLASLGRPRPPLPYGRIRPASHYVGSLQPARGSYVGGFGYQQQPLSYGYQQGLVYPPY GYTTYGPEYIYPQNVYNPYVGQQYLQIYGVPGAVNTTVYPYGQLGQTIPSGHGYTAMPGYTVPAHQIVPYGGSSVNSITT SPMPAIQASYPSGIASPVPGQPQFIVPAPSQFMQGGGHDQTAG 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 281 281 1.3E-153
PANTHER 1 281 281 1.3E-153
Gene3D 4 114 111 5.4E-25
SUPERFAMILY 8 118 111 7.87E-26
CDD 30 105 76 5.40626E-46
ProSiteProfiles 30 107 78 16.756
SMART 31 103 73 1.2E-23
Pfam 32 88 57 5.8E-17

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Molecular function MRNA binding Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0569800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…