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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0569800 |
Transcript ID | LotjaGi1g1v0569800.1 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | RNA binding protein, putative; TAIR: AT1G76460.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q9M1S3|ARP1_ARATH Probable RNA-binding protein ARP1; TrEMBL-Plants: tr|I1K789|I1K789_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0569800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:110252764..110259426) extracted from Lotus japonicus Gifu genome v1.2.
CATATGAGCACCATCTCAGGCTGTCCGGTTGGGTTGGGAAATGCGAAGTCTCGAAGAAAACACGAGTCAGTGACTCTGGC CTGGCCCTGCCTTTTCTTTTTCCTCAATTTCCCCCATTTTCTCTCTCTCTCTCGCCGTCAGTTACTCCTCCTCTTCGCTG TCGTTTCAATTCATTCCTGCTTCTTCTCCTTCAAATCCAAAATCCTAAATCAATCACAACATGAATCACTCCCACTCTCC TCCCCCTACATCATCATCATCATCACCATCACCAACAACCATCATCATTCATTGATCCCAAAACCAAAAACACACCCTCT TCTTCTTCTTCCACTGTATATACTACTACTACTACTTAAGATTCTTTTTACTCTTACCACCATCATCACACCATCCTATT CCTTTTCCCACCACCCACCTTTCTCAATTCTAGGGTTTTCACTTTTCACTTTCATTTCGTTAGGTTTCCTCCTCCGTCAC CCTCTCTCTCTCTCTCTCCACTTCATGTGGATACTTGTTCCTCTGCTTATGATCTGAATTCAGTACGATTGATTTCTGTA TTCATTGTAATTGGGGTGAGGGGGAGAGTGGTGATTGATTGATTGATTGTTGATTAATGGCGTACCAGGCGATTCAGGGT TCGAGTTCAGGATCGAGTTCGGGGTTTCAAATGGTGAATTCTCCGTTCGGTGACACCACTTTCACCAAGGTCTTCGTTGG TGGATTGGCTTGGGAGACTCAGAGTGAAACCATGCGTCGTTACTTTGAGCAATTCGGGGAGATTCTTGAGGCGGTTGTGA TCACTGATAAGAACACTGGGCGATCCAAAGGCTATGGTTTTGTGAGTATTTTTGTTATTCCATTTTTCTCCTTTATTCTG CATGTAGAATGACTGGGTTTGTATCTCATCTGCATGGAATTGGAGGGTATAGGTGACTTTCCGGGATCCCGAGGCTGCAA GGAGAGCCTGTGCTGATCCAGCTCCTGTCATTGATGGTAGAAGGGCTAATTGTAACTTGGCTTCACTTGGTCGACCACGC CCACCTCTTCCCTATGGTATGGTATTATTGAATTTCTTAACTATGCCTAATTGCTTGTTTGAAAATTCTTACAATTAGTT CTAAAGTTAAAATCAATTTTAGAGAGAAATTTGTGAGAGTACTAGTAGCTGAAATGCTTGAATTATAATGAGAAAAGAGA AGTTAATCAAGTGTGGATTTCCGTGCTTCCAGACTCTGGTTTTAGGGGAGAATTGAATTGATTGATTCAGACACTATGAT TGATACATGTTATGAGGGGCATGCTAAAATTTAATTGTGAACTCGGGTTTTTACATTGACTGATTTTTATATCATTTAAT TATGTCACTTCAGCATTATTGTCGTTTGTGGTTCTTATTGTTATTCATTATTATTGGAATGGAATCCCGCACTGGCATGC CTCTGTTATCCATTTCTCTATTATTCATTGTATATCTCCTGCACTGTTAAGTTTACTTTTCTAACCTGCTGCGTTCATCT GAAAAAAACAAACTTATTCTTGTATTAATTACTCCAACCATATCTACCTTCCATACATTTCATTTGTCTGTTATCACAAC ACAGGTCACATCTATGACATAACTTTATTCTCTTCCTTTCTCATTGTGTTGATTTTGGGTGTCTGAAACCATGGATAATA TCTCCTAACCATTACTGTTCTTGTATAAAATGAAAGGCCTGGGTAATTTATGGACCGCAATTAATTATTAACTTATGTTC CTGTCCTGTCACGTGAAATGGAATCTGTCTTTTAAACAGTCTTTTGGTTTTGCTTCAACAATTTTGTTTAACTCAAGCTA ATATTTTTCTGTTCTTGACATGTTTAGAAGTCTGCTGTAGCGTAAGCATTTTATGTTACAGTTCTTACCTACTTTCATCT TTTGATTGCTTCTGTTGTCCTTTTGTAGGTCGGATAAGACCAGCCTCCCATTATGTTGGAAGTTTGCAACCAGCACGTGG TTCTTATGTTGGAGGTTTTGGCTACCAGCAGCAGCCACTTTCCTACGGCTATCAACAAGGATTGGTATATCCTCCTTATG GGTAAGTGGGCTGACGTTGCACATCACTGCAAACTTAGAAGATGTAATTTCAATGCTCATAAATATTCTCTCGTCTTTTC TTGATAATTGTAAGTGTTAATACTTCCTACTTTAATATCTGTAGTATTGCTATTACTACACTCATCATCAACTCATATTT TTTTGTGACTGTTAAATAATGGTGATCTGATGACCATTAAGGTCAAGTAGACGCATATCCATGCAAGGGCCTGTTTAATC CTCATTATTTCTTTCTGTGGCAATCTACACAACTGTGGCAATCTACACAAACCAATCCCAACACAGTATCCTCGTGGTAG TGGTTAGTTAGGAGGGAAAAATCTCGAGAGTGAGGGATTTGGTCATTACTTGTCCATTATATCAGGAGAACCTATTTCAA TTAGATTTCATAAACTTATTTATCTCCATGCGTGTGACATGTTCCTAACTACATTTGCATTGTGCATCAGGATGTATTAC ACCAGAATCATGCTATAGAGGTGATCTTTTCAACATTATGTGGTTGTTTTATCTTTGCAGGTATACGACGTATGGACCTG AATACATCTACCCACAGGTCGATTGTTTTTTCTTTTAAAATTGGCTTAAGAAGAATGTTATATTTTTGTGTGTATTGCTG ACATTTTAACCTTCTGCTATCTTGTCTAATAGAATGTGTACAACCCATATGTGGGTCAGCAGTACCTTCAGATATATGGA GTGCCTGGGGCAGTGAACACTACTGTTTATCCTTATGGACAATTGGGTCAGACTATTCCTAGTGGTCACGGTTATACAGC AATGCCAGGTTATACTGTACCAGCTCATCAGATTGTGCCGTACGGCGGATCCAGTGTTAATTCCATAACAACTTCACCTA TGCCTGCCATTCAAGCATCATATCCTAGTGGTATAGTTATCTGCTCTGAAGAATCACTATTTTTGACTTAAGCTCTGCCT TTTTGTTGCCTTCGGAACATGCATTTTACTTTTAAAATGTCTCAATTTTAATTCATGCTGCCTTACTTTTCCTGTCATTG AAAGACTGCTAATTCATATTTGATGTAGTATCAACATCCATCTTCGGTGGGCATTCTTTGAGAAACAAATGCCCATATGT ATTGGAAATGACATCCCTTAGAAAACACTTCAGCAAGTAATCATTTAAGTCTTAACAAGCATTGACATGTCAAGACTGCA TAGACTCCTGCAACGAGATTAATAGATTTATCAAATGCATATGTATGCAATTAGAGCTGTCAAACCTAGAATTATGTACA AGATTAGGAGTATAGTACTTTTTAATTGAATGTGGAAGTTTTTGATGAAAAAGGGTAAGTTTTTTTTTTGACAGTAAAAA AAAAGAAAAAGAAAAAAAAGGGTAAGTTGTAGTTGTGGTGGATGGCTAGCAACAAACCTGTAAAGAATAAGTTATACTTG TTTCATATGGAGAATTGTTATAAAATGTATATATAGAATGAGGCGTTAAAATACCCATACCACATCTTTTACAAGTGTGT TGGCTCTTTCAGGAATAGCTTCACCAGTTCCAGGCCAACCCCAATTTATTGTTCCTGCTCCTTCTCAATTTATGCAAGGT GGTGGTCATGACCAAACAGCCGGGTGAGGGGACGAATAAGGTTTGGGCTCTTCACCAGCATCTTAATCTCCTTGTCTTTT ATGTCCAGCATGAATTTATGTTTTGAAACTACTCTGTTGCAGATATCCATAGTTTGCAGCAGGTCTAAGAGCAGTGGAAC TCTACTTGAGTGGCAGGCTTCCAATCTAGCCTTGCAAGTTAATTATTCTGCATTCTAGAGGTTTGTTGCTTTGCTTACAT TGCCTTAATGACAGATGTTAGAAATGATTAAAGCTGAACATGAGCATATTGTAAGTTTTTTTTTTGGCTCAGGAAGCAGA GCTTATGAGCCATTGAAATATATTTGGCTACTTATATGTTTATAAGTCTGTTTTCCTGCTTTTGTTTTTTCAGTTTGTAT TCGATGCACCAAAAAGTAAAAACAAAACACAATTAAGCCAAACTTTGAGCTGAGTAGCAGCTTGAAAGGTTGAGTGACTC ATGAACTGAGTAAAAATTTCATGAACTAACCTAGGCTCATTTCCAGCCGTACTTAATTGCAAAGTTGGCTGAGCACCAAC GACGAGCACCAATCCTTACCGCTGTTTTTAAGTAAAAACAGGAAAAATATAATTTTAGTGGTGCCAGCTTGAGGAGGCAT AAAAATAGAATCTCGGTGATCATAATTGCTTGACCGAATAACCTGTAACAATGATATAAATACCATTGAAGAATGAATAG AATTCATCGCTTTCTGCATTCTTTTCAGTTTTTACTTCACACCAAGCTTCCAATATTGACCTTGACCATGGCCTCCCTCC CTCCTCCCCTTGCATCATTTTTCCTTTATTTTCTTTGATTACCATGACCATAGCCAATCATATTGATGTAAACACAAAAT GCACACCATTTTCGTGTCATAATTATTTTAAATACAATCTAACGTATCCTTTTTGGCACAATGGTCAACCGGATAACTAT GACATATTGATGTAGACACATAATGCAGTGTCATAATTATTTGAATACAATCTAACGTATCTTTTTGGTAAAAAATGATA CGTTGGATTGTATTTAAAATAATTATGACACGAAAATGGAGTGCATTCTGTGTCTACATCAATGTGATTGGCTATGGTCA TGGTAATCAAAGAAAAATAAAAGAAGAAGATGCAGGGAGAGAAGGGAGGGAGGCCATGGTCAATATTGGAGTTTTGACGT GAAGTAAAACTGAAAAGAATGCAGCGATGAATTCAATGGTATTTATACCATTGTTGCAGGTTATCCTGTCAAACAATTAT GACCACTTAGATTATATTTTTATGTCCCCTCAAGCTGGTACTAAAATTATATTTTTTTTGTTTTTACTTAAAAACAGCTG TAAGGATTGTTGCTCGTCCTTTCTGTTTCGCTGGTGCTCTGAATTATAATATTGCAAAGTTGGCTCTGAAATATGGTTTT GGACTTTCCCAACTCCAAACCTGTCATGCACTTAGCAATTGGAAAATGTCTAAGTGGATTTTATCAAAAGCTATTTAGAC ACAAGTTTATTGATGTGCAATTTACTCTTTTTGTATCTTAAATGACACAGGGTCTTGCAGTAGTATTTAGCCTTCTGTTA TATACTGCTACACTTCATTTCAGCATCCTTCTATTGCTTTCGATTAGCACGATTAACATCATAAAGGTTTAATTTTTGCT TACCAAATACAGGAAGTTGTATCCCTAAATGGATTGTTCTGTGTTAGTATGAAATGGAAAACATTGGCATTGGAGCTCTT AACAAATTTGCTATGGTGCAGGTCATATATAGTCATGCTCACCAAGCTGTGTTCGAGTCGCTTCGATGGCAAAGGAAATT GGAACATGTTCACACTAGTGTATTTATACCTAATACTACCCGTACTCAGGAAGAGTGGCGGCAGTATTGGATCAATGGGT GTTGGAATGGGTTTCTGGCAGCCATGTAGTAATAAACTTGTGTAAAAAGAAAATGGTGTCCGAATCAAAATATGATTCTT TGTAGTCTTGTCCAGCATTGGGTTTGTAGATAGTTGTCAATGTTAGTGAATTGTGTGGCGATGGAGGGTCCATCACATTG AATGTAATTTTTGTGCATAGTAGTTGTCATAGGTTCTACAAGAAGACAGGGGTGTAATTTTATTATTTCAAAAACCTGCC GTTTATGCAGGGTAGAACCATCAGTATTTTCCATTGGAGAAGGTTGCAGTGGTTCTATGATGTTATATATTACCTTCATT CAGCATGGTCATATGATAAAACATTTTCTTCAATTCTTTAAGGTGCTCAACAGTAGTCATTAAACTGTATATTTTCTGAT TTCTCTTGACATGTCAACTGCTTTTTAATATCCACCAATTATGGTAATTCAATCGTCTAATTGTTGGTGATCCAATTTGG TTGGAATTACTAGAGCCAGTTGCCTAAGAACGGTTTCTATCTCTGGTTATATCATAATTAACATAATCCTTATGCTATGA TTGTTTGTAAGTTGTAACTATAGGGGTTATTCGCTAATTATTTTCCACTTTGGTACGAGTTTTTTTTGCTTATACATATT TTGCTTATTATGCATAGTGAAATTTAGTTAAAATACCTGTGATCAATGTTTTTCTTGGTTTAGCTCATTATTTTGATTCT CATTGTTGTCAGCAAGGTAAATCAAGTTGGAGGTGCTCAGGTGCAGCCACTGATATCACATGTGATCAATATTTTTGTTG GAGTAAATTTCATTTGTAATAGAGCTGATGAAACTTCGGTTAGTATGTGATTTCGGTCTTCTTAGAGCTAATCAAGCTTT TGAAGCTGCTATATGGAACGAAAGATCATACATATTGCATTAGTGAAAATGGACCAACCGGTGTGGTTTCCGGTCCCTCA TCTCTTAATTTTCCTTAATGCTGCTCACTGGCTCCACTACTCAGCCACAAACTTTTCTATCTCTCCTTCTGCACAATGGT TCCTGCTCCATCGCAACTGTTAC
CDS sequence (LotjaGi1g1v0569800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTACCAGGCGATTCAGGGTTCGAGTTCAGGATCGAGTTCGGGGTTTCAAATGGTGAATTCTCCGTTCGGTGACAC CACTTTCACCAAGGTCTTCGTTGGTGGATTGGCTTGGGAGACTCAGAGTGAAACCATGCGTCGTTACTTTGAGCAATTCG GGGAGATTCTTGAGGCGGTTGTGATCACTGATAAGAACACTGGGCGATCCAAAGGCTATGGTTTTGTGACTTTCCGGGAT CCCGAGGCTGCAAGGAGAGCCTGTGCTGATCCAGCTCCTGTCATTGATGGTAGAAGGGCTAATTGTAACTTGGCTTCACT TGGTCGACCACGCCCACCTCTTCCCTATGGTCGGATAAGACCAGCCTCCCATTATGTTGGAAGTTTGCAACCAGCACGTG GTTCTTATGTTGGAGGTTTTGGCTACCAGCAGCAGCCACTTTCCTACGGCTATCAACAAGGATTGGTATATCCTCCTTAT GGGTATACGACGTATGGACCTGAATACATCTACCCACAGAATGTGTACAACCCATATGTGGGTCAGCAGTACCTTCAGAT ATATGGAGTGCCTGGGGCAGTGAACACTACTGTTTATCCTTATGGACAATTGGGTCAGACTATTCCTAGTGGTCACGGTT ATACAGCAATGCCAGGTTATACTGTACCAGCTCATCAGATTGTGCCGTACGGCGGATCCAGTGTTAATTCCATAACAACT TCACCTATGCCTGCCATTCAAGCATCATATCCTAGTGGAATAGCTTCACCAGTTCCAGGCCAACCCCAATTTATTGTTCC TGCTCCTTCTCAATTTATGCAAGGTGGTGGTCATGACCAAACAGCCGGGTGA
Protein sequence (LotjaGi1g1v0569800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAYQAIQGSSSGSSSGFQMVNSPFGDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRD PEAARRACADPAPVIDGRRANCNLASLGRPRPPLPYGRIRPASHYVGSLQPARGSYVGGFGYQQQPLSYGYQQGLVYPPY GYTTYGPEYIYPQNVYNPYVGQQYLQIYGVPGAVNTTVYPYGQLGQTIPSGHGYTAMPGYTVPAHQIVPYGGSSVNSITT SPMPAIQASYPSGIASPVPGQPQFIVPAPSQFMQGGGHDQTAG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 281 | 281 | 1.3E-153 | – | |
PANTHER | 1 | 281 | 281 | 1.3E-153 | ||
Gene3D | 4 | 114 | 111 | 5.4E-25 | ||
SUPERFAMILY | 8 | 118 | 111 | 7.87E-26 | ||
CDD | 30 | 105 | 76 | 5.40626E-46 | – | |
ProSiteProfiles | 30 | 107 | 78 | 16.756 | ||
SMART | 31 | 103 | 73 | 1.2E-23 | ||
Pfam | 32 | 88 | 57 | 5.8E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
Molecular function | MRNA binding | Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns. |
Expression pattern of LotjaGi1g1v0569800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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