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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0570000 |
| Transcript ID | LotjaGi1g1v0570000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AT-rich interactive domain protein; TAIR: AT1G76510.1 ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q0WNR6|ARID5_ARATH AT-rich interactive domain-containing protein 5; TrEMBL-Plants: tr|G3M3K3|G3M3K3_LOTJA ARID and Hsp20 domains containing protein; Found in the gene: LotjaGi1g1v0570000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:110285783..110293588) extracted from Lotus japonicus Gifu genome v1.2.
GTATCCTCTATATGACATGGTTCGAGACAGAAACATCTACGAAGTGGCGGAGTTCACTCTCTCAGAAAGATTATTTTCTT TCATCTACTAAACTCGAACCTAAATCATATCTTAAAGAAATCGGACATGTACCACTTGAATCAACACTCATTTCCTCGAG TCTACCAAAGGATAAGATGGTCTTTTGACAAGCAAGAAACCACCCTTGGGAAGTAGAGTAGAGGAGGTGGAGCCGTGGAG GTGGAGGAGGTGGTGCCTTTAATCTCAACCATCCTTTGTCTGCTTCCGCCGCATGGGTGAGGTCATTTTGTCTAGATGAC GTGCAATTTACAATGATACTTCGTATTTAGCTTCAGTCTCTCATTCATCTTCTAACTCCGTTCCGCGCCGCGATTCCAAT CAGAGACAAAACTCCCTTCTCCTCCTCCTTCTCCAATTCCCAAAACCCTACATTCGCCGCAGCTCAACCAGTTCACTTCA CTTCCCTTCTTCCTCGTCAATTCAGGTAAATTCTCTCCATTTCTACTTCCAATGTCACCACTGTTTCACCTTAGGGCTTC AATTTTTCATCGTTTTTCCAGCATCATTCTGCATTGTATTGTTGTTTATAAACCTTCAATGAGTAGTGAAGTGATGCTAT TATGCTAAGAACATGGTGTTAATTGACGTGGATGTGGAGTGTAGGGTAAGGAGTTTAAGGCTCTGAGTGAGACTAGAAGA GATGGAGGGTGGTGAAAAACCGGTGGATAATATGGAAATTGTTGATGATGATACGACTTTGCTACCCCAGAATTCTGACA AGGATCAGAATGCGGGTTCCTCTCCTATGGTGCTTGCTCCCAATTCTCTTGCTCAGATACCAAAGGATGAAGTTATGGTT GATCAGGGGGATGATGATAACAGAATTGGGGATTCTACTCCGAATAACATGCTAGAAGTCAAAACAGGTAGTGAGAATCA GCTTGAGCTTGAAGATGTGAAAACGCCTTTGCATCAGGAATTGGTCACTCCAAAGTCCAGAGAAAGGAATGTCAGAGAAA TGAAGAGCGTGCTAAACGATACTGAGGTACTTCCGGTTAGATATGATGTAAGAGCATTATATTGCCATCCTTTAGTAGAT TGTAAAATTGTTGCCTTTCTCGTCCACAGGTGGTTGATTATGATGAGCCTGGTGCGTCTCTGGAGCGAGAAGCATTTATG AAAGAGCTCGAGAATTTCTACAGAGAAAGGTCCTTGGAATTTAAGCCTCCTAAGTTTTATGGAGAGCCACTAAATTGCCT GAAGTATGTATTTCCCTTGTAACGCATTGGAGTAAACTCTTTCTTGCAAGCATTCTAATTTCTAAGGCTTACTTGGCCTC CTCCTTGATATTTGATTTGAATAAATTTCTTGTCTGTTCTGATAGCGGATTCCTTACTTTCCATTGGGCTGCAGGTTATG GAGAGCTGTTATCAGACTTGGTGGCTATGATGTGGTACAAGTCGATCTCATGCATTATTACTGAACATCTTTTTGTTTTT AACACTGCTGTCTAAAATATACTTTGTGAATTTCACACTCAAGGCCTATATTACTGCTATTGCTCAATATAGTTCAATCG AATTCATGCCTTTTGTAATGATAAAAGGGATGTTTACGGCGACTCTAAATTTAAACATGTTAGCAAGCATCTAAAATAGT GATGGTTGTGTTGATACACCAGACTTTCTGCAGTTATGCTTTCAATGTTACTGTTTGATGGTCACGGCGACAGTTATCTT ATTGACTTAATGAATCACTTAATAATTTAGGGTTGGTGATTCATCTAATAAAATATTTTTTTAAATTTAGAAAGATATGG TAGGACAGAGCTCAAACAGTTGTGGTCTGACATGTGGAAACCCGGTAATAACTTGGGCATATGGGATTCAATGTTTTACT TTCTTTATATATGGGGTATGAGCTCGCCCAGATTTTGTATTAATTAACTTATTTCTTGTTATTGATTTTGATGATTTATG TGATAAATTTGGATTAAATCATATATGATTGGTTAGTTTACTTGGATTAAATCAAAAATCAATTTGGATTACTTGACATT TTCTTTCATTTGGTGCGAAAAAGTATTGGCCTCTTTGTTAGTTATTTGCTACCAATGGGTGAAAGAGCTGGCTTACGTTA TTGACATTTGACCCATTATATGAAGGTAACTGGATCCAAGTTGTGGCGCCAAGTAGGAGAGTCTTTCCACCCCCCAAAGT AAGGGCTAAATAAATTATTGGTTTGTAGTTCTTAATAAGGTTCCATAGCCTGAAATCTGGTATTTCTTATGTTTACTGTA TTTGTTATACTCTTTGTAGTTTTCTGAGTTGCTCTTTCAACAATTCACTTCAAGACAAAATTTCAAATATCCCTTTGGTC GTTATTATTTTTAATACTTATCTCTCACAGGACTTGCACAACAGTCTCATGGACATTTAGAATCTTCTATGAGAAGGTAA GGTTTATGTTACATTACCTATATGCTTATTAAATTGATCTTATATCTAATTATTAGTAAGGTTGCATCTTGCATATTTGC TATAATTGATAATTTATAATCTTAAACTTTTGTCGGTGCTCGGTTTAGCATATTTTCTGATATCAGTTTCAATTGGGAAA AGTGTCTATCTGTATTTCCCCATCCCATGGCATGATATGTCCTTGTCATAGCACATTCGCCTATTGGACATCAAAGAAAT TGAAATCAAGATTTTCCATCATATCCGCTTATTTACTGCCTTGTACTATTTCAATTTTCAAGTGTGACGTTTGTTGTTTT TTTCTGCCACTTGCACCATCTGCTGTTTTCATTTGTGTCTGAGAAGTTTCAATTTTCACAGGCACTTTTGGAGTATGAAA AGCATAAGAGAGAAATTGGGGAGTTACAGCTCCCTGTTGGAGTATTCCCTCAACCGTCAAGTGTGGAAAAAGAGGTTTGT ACATTGTTCTTCCTTTTTCCCTTTTCCCCCTCTAGTTCTTTGATTTTATGCCTACAAAAGATCATTGTTGTTTTCCTTTG TCAAGTCATGGGTCTGATAATTTATGAATATGAATAAAGCTCCTAAAGGTTCTTTTCTCCGTTGGTTATACACCCATGTA GCTAGAGACAGAAGTTGAGGTGTGAAGTAAATGCACTTCACATGACTGGATTTGAACAAAATGACTGCTAGAATGAAAAC GTCAGACTTCTTGTGGTTATGTGAGAGACGAAAAAGAAACATTGCTGAGTCATTGGTTTTTGGTTTATAGCAGAATTATG TAGAAAGCATAAGGAAATTGATCGGTTTTTGTCTGCAATAGTTGAAGTGAATGATAGCTTGTGAACTGTACCTCAAGATG AAAGGAACAAAAGCCAAAAATATTTGGCACCTAAGTTTTCTATCCATAAAAGCTACTTCTCATCAGTGCAATTGTAATTA AATCTAAGCGTAAACTATCCACAGACCAGGCTCAGAATGATACTGTGTATTTTTACATCTACCGGAAGGACAGCACTTAG GAAACACAAATGAATGCCCAATAATCAAACAGACCATATTAATAATGATAGAGAACTGGCATACTTTATCAACAGACCAG GCTCAGCAACTGCTGTAAACTTAGGAATGATACTTTAAGATATAACCGTAGATACTCCCGTAAAAATAAAATACATATAG CACATAAAAAAGTACAGTGAAGGGGCATTCATAAAAAAAAACCAATAAATAAATATAATCTTTGAGAAAAATTAAAAGAA GATAATCTAAAGAAAAATAGGCAACACAATGATACACTTTAAGAGTTGCTGTGTAATCAGCCATTAGTAACAATGTTTAC ATTTAGGATACATATTATCATGTCAATTATACTACGTACTTTCTAAAAACATGGAAAGGAGAAACCAAAATAGGAGCCAA CAATGCTGGGCATTGAAGCCATTGCTGACCTCACTGTTAAATGTTGATGGATGTGGGTGTTGTGGGCCCAAAATCCTCAA TGTATAAGGCCTCTATTCTAGTGATCATGGAAGGTGAGCAGCAGCTGCTGCTGGCTATCTCCAGCAAAATGAAAAACGAA TGCTAATGTTTTACAAAAAAAAAACCATTTGAAAGAAATGAATTGTATAATTAAATTTATGAATTTCTCTGGCAGACCAC TGTTTATCAGGCTCCAGGCTCAGGTAGGGCGCGGAGGGATGCGGCAGCGCGTGCAATGCAAGGTTGGCATGCTCAGCGCC TTCTTGGTTACGGTGAGGTTGCTGAGCCAGTTATTAAGGTCCGTCGAGACTTTTGAAGTTTACTTTATTATTCTTATGTG TGTCATTCTTGTGTGTGTCCATATATACATATTTATATATTTTGTAGCAATTTTTCTACCACTGAAGCATTTTGTAATTT CTTGCACAGGATAAGAACTTCAACCCTACAACAAAGCGTGAAAAGAACCTCAAAAGTATTGGTATGCCCAGTTGCTTGCT AGAAACATCGCTAACTGTTCTCTAAATTAGCTGCAACCTCATTTCTTCATGCTTCATTGAATTAGGTGCGATCAATAAAC AGAGGACACCGTCTGTTCTTGAGCATGTTGAAAAAGCTGCAAACATCGACGGAGATAGGCAGTTAAGTTACTGATCTTTT CTATTAATTGACTTATAGTCGCATAGATACATTTTTCATCTCTGGATCACTGTTATTCTAGTCCTTGGAGATTACCCCTG GCTTTCTATACCTGCACCCTTCCTCCCTGAAGGTTTCTGTATTTTCCTCTTTCCTCCAAATGGTTTTGTGAACCAAAACA CAGATGAAGAAAATGCACCATGGAGACATTTGGCATTTTCATAATATAAGCGAGAATGCCATTCATTACTACTAATTCCT CAATCAATTTGACCGTTTATAATTCCTACTTCCAATCTGAAAAAGACACAAATGCATTACGAGGCTTTATTCAGGTTTCT GTATTTCTTATTAACCAAGGCTAAATGATTTTCATCTGGTAGGTTGGTCACAGCAGTAGTGGACGTTGGACCCCCAGCTG ACTGGGTGAAGATCAACGTGCGGGAAACCGTAAGTCATATTGGTTTATTCTTTATCTAATTGAATTCATGTCCTTTCTAT GCATCATAATGGCAGATATTTTCTAATTTAAATATATTTTTTTCCAAATATAATTGGACTGTTTGCTTTATCCATGTCCA GAAAGATTGTTTTGAAGTGTATGCGCTAGTTCCTGGGCTCCTCCGTGAGGAGGTAACCTCTATGGCTCCTTATTTTTATT CTTTTATTATTTTTGTGAGGGGAAAACTTGCTTGATAGTTTATTCTGTTTGATGAAACATATTAAGGTTTCAATTGTCAA GTCCCTAGTTAATAAAAATAATTAGTAAATCCTTGAATTAGTACAATGTATTCTAGATTTTGGTTCTTGAGTACAAGTGT ATAAGATCGGATGTACAATCACTTTCTTCCACGTGTACTGATCTATATTGGCTGTTTTTGGATTTTTTTTATGTGAGAAA TTCTGTTACCATAGTTTTCTATATGGTGGGGATATTCTGGTGCTATTTTCAGCAACAACCAAAGCCTATTCCCGCTAAAT AGGGTTGGCTACATGAATCAAACGTTGGATTACTAATGTTCTACCGTTAAGTCTAATGATAGACTAATTAAATCTAAACT TCCTTAGCAGTTCGACCTATAATTTTCTTTGGCTCTCTCTTCCTCTAACTATTTGACTATTCTCTATCTTCTTCTTGTCT ACTTACGGGTGTTTCTATGGGAGCTACCCCAACTTTCTCTCTAATGATTTAGTTCAGTATCATATCTTGTCACTCATTCA TAACCTTTTTAAGAATCTTTGCAACAGTGAGTTTACCCTCTTGTTGGCTCTTTTTGTAATGATAACAAAACTTGTTCCTA CCTGTATTTTGTGATTGGTAAAGGTATGTCTTAAGGTTCAGCAGGTGGAGTTTTATAGCATCTGATCGTAAGGATGGATA CAACCTACTCATTTTAGAGAAAAAGGGCCATTTTTCTTTTATGATTTCGGCTTCCTTGGGTTCTATTTTTATTGCTAACT TTGTTTTGATGATAATATTTTTGAGACTCTTTCCTTTATGATTTGGGCTTCCTTGGATTCTGTTGTTAATGCTAACTTTG TATAAATGAATCCAGGTACGAGTCCAATCAGATCCAGTTGGACGTCTTGTTATAACTGGTATGCCAGAACATATTGACAA CCCATGGGGAATCACCCCCTTCAAAAAGGTAACTCTATCTCTTGTTCATAGAATCTTGATGTATTGATATTTTCAGGAGG ATATCATGATGTTAACAGAAGTAGTAGAATTTATCATGTTACTAGTGTGTGTTCGGTTCCCCGTCGGGTAACCTCATAAC CATTTTTTAAGTAAAATTAATTACAGATGATAATATAGATGTTTGAGAGTCATTTTGGAGAATGGATTTCAGTCCCAAAA TCAATTATGTTAGAAGCTGGAGATAGTAGTTTTTGCGTTGAACGTAATCAATTGTGATATTTTACAACTGGATTTCCCAA CATTACCTACAAAAACCATTTTTTAATAGATGTATCCAAACATAAATCACTTAACTTTCAATTCACTTTTCCTATTGTCA ATTTTACCAAAATCAATTTTACCCAAAATCAATTGCGACAACGTTGATCCAAACATATTAACTTTGTTTCTTCAGTGAAA ATGATTGACTGAAATTAGTGATTTTGTCAGGTTGTGAACTTACCTGCAAGAATTGATCCCCTTCAAACATCTGCAGTTGT TAGTTTGCATGGTAGACTATTTGTTCGGGTTCCTTTTGAGCAGGGAGCCGTGTAAATTTTCCTCCCTCCAATGGTTGGTT TCTCAAATTTCCTCAAAAGGAGTTACAGTTTTCTGAAAAATCAGGGTGGTTATGCTAGGAACTAGTCTAGCCCTGTCAGA TTAGTTGAAACTATTAATTTTTTAATTCTCTTTAGGTAAAATACCGCATTTAACTTATGCAATATGCTTGATTTTCCTGT GTTAAATTCCCTTTTACCTTCATACCCAAGAAATGGAATTTTTATGTATTCATTTTGCATTGGGGGATATTCATTAGTAA CAGTGTGTAGGATTCAAATAAGATACTATAGCATATGTTTCCATACCCGTACTTTTAAAAAATTACTTGTATCAAGACCT ATATCTGTGTATTATGTATCTCTATTATTTATACTTTAGTCAATTTAAATTGTATTTTGTAATGCGTTTATATTACAATT TAGTAAAAACGCAATCTTACTATGATACTAGACGCCACCTAATGTAGGCCAATTTGAAAATGGCTCAACTTTGCACCTCA ATTTAATAGGTATTTTTATGTTTTCTTAAAGTTAAATTATTTTTAAATTTGTGGTTTAAATGTTTAATGTTGTGCTCTAA CGATACAGTCCCTCTCTTCCCAATTCAAATACCTTCTCCTCCTCCTCCTAAATGGGCTCCGACCAACGGTTTCCACACCC ATTAACTTCCGCCTTTGAATGTCAACCACCATTACATTCGAAACCACCACAAGCCAAAGCCTCATGCCGTTGATTTAGAA CCCTGTGCCTTTTGCGCCATTTGAAGGCCATTCAAAAAAAATGTTTGAACATCCAAATCTATAACTTTTCCTGCATCTAC CTCAAAAGGTTCAATGAGATGACTCCAATCCTTGATGAGAAGCTAAGAATTACAAAACACCCATGGTCTTCCTTGCATGA TTCTTCTCACATCCTTCTCATTGTGTAAAAACAAGTACGTTTTTTC
CDS sequence (LotjaGi1g1v0570000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGGTGGTGAAAAACCGGTGGATAATATGGAAATTGTTGATGATGATACGACTTTGCTACCCCAGAATTCTGACAA GGATCAGAATGCGGGTTCCTCTCCTATGGTGCTTGCTCCCAATTCTCTTGCTCAGATACCAAAGGATGAAGTTATGGTTG ATCAGGGGGATGATGATAACAGAATTGGGGATTCTACTCCGAATAACATGCTAGAAGTCAAAACAGGTAGTGAGAATCAG CTTGAGCTTGAAGATGTGAAAACGCCTTTGCATCAGGAATTGGTCACTCCAAAGTCCAGAGAAAGGAATGTCAGAGAAAT GAAGAGCGTGCTAAACGATACTGAGGTGGTTGATTATGATGAGCCTGGTGCGTCTCTGGAGCGAGAAGCATTTATGAAAG AGCTCGAGAATTTCTACAGAGAAAGGTCCTTGGAATTTAAGCCTCCTAAGTTTTATGGAGAGCCACTAAATTGCCTGAAG TTATGGAGAGCTGTTATCAGACTTGGTGGCTATGATGTGGTAACTGGATCCAAGTTGTGGCGCCAAGTAGGAGAGTCTTT CCACCCCCCAAAGACTTGCACAACAGTCTCATGGACATTTAGAATCTTCTATGAGAAGGCACTTTTGGAGTATGAAAAGC ATAAGAGAGAAATTGGGGAGTTACAGCTCCCTGTTGGAGTATTCCCTCAACCGTCAAGTGTGGAAAAAGAGACCACTGTT TATCAGGCTCCAGGCTCAGGTAGGGCGCGGAGGGATGCGGCAGCGCGTGCAATGCAAGGTTGGCATGCTCAGCGCCTTCT TGGTTACGGTGAGGTTGCTGAGCCAGTTATTAAGGATAAGAACTTCAACCCTACAACAAAGCGTGAAAAGAACCTCAAAA GTATTGGTGCGATCAATAAACAGAGGACACCGTCTGTTCTTGAGCATGTTGAAAAAGCTGCAAACATCGACGGAGATAGG CAGTTGGTCACAGCAGTAGTGGACGTTGGACCCCCAGCTGACTGGGTGAAGATCAACGTGCGGGAAACCAAAGATTGTTT TGAAGTGTATGCGCTAGTTCCTGGGCTCCTCCGTGAGGAGGTACGAGTCCAATCAGATCCAGTTGGACGTCTTGTTATAA CTGGTATGCCAGAACATATTGACAACCCATGGGGAATCACCCCCTTCAAAAAGGTTGTGAACTTACCTGCAAGAATTGAT CCCCTTCAAACATCTGCAGTTGTTAGTTTGCATGGTAGACTATTTGTTCGGGTTCCTTTTGAGCAGGGAGCCGTGTAA
Protein sequence (LotjaGi1g1v0570000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGGEKPVDNMEIVDDDTTLLPQNSDKDQNAGSSPMVLAPNSLAQIPKDEVMVDQGDDDNRIGDSTPNNMLEVKTGSENQ LELEDVKTPLHQELVTPKSRERNVREMKSVLNDTEVVDYDEPGASLEREAFMKELENFYRERSLEFKPPKFYGEPLNCLK LWRAVIRLGGYDVVTGSKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKREIGELQLPVGVFPQPSSVEKETTV YQAPGSGRARRDAAARAMQGWHAQRLLGYGEVAEPVIKDKNFNPTTKREKNLKSIGAINKQRTPSVLEHVEKAANIDGDR QLVTAVVDVGPPADWVKINVRETKDCFEVYALVPGLLREEVRVQSDPVGRLVITGMPEHIDNPWGITPFKKVVNLPARID PLQTSAVVSLHGRLFVRVPFEQGAV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 47 | 47 | - | – | |
| MobiDBLite | 17 | 40 | 24 | - | – | |
| PANTHER | 42 | 423 | 382 | 7.5E-202 | – | |
| PANTHER | 42 | 423 | 382 | 7.5E-202 | – | |
| Gene3D | 104 | 225 | 122 | 3.4E-22 | ||
| SUPERFAMILY | 111 | 223 | 113 | 3.66E-30 | ||
| SMART | 122 | 212 | 91 | 2.3E-27 | – | |
| ProSiteProfiles | 125 | 216 | 92 | 24.573 | ||
| SMART | 126 | 217 | 92 | 3.8E-33 | ||
| CDD | 127 | 212 | 86 | 1.46511E-27 | – | |
| Pfam | 127 | 212 | 86 | 3.8E-17 | ||
| Gene3D | 320 | 424 | 105 | 8.9E-7 | ||
| ProSiteProfiles | 324 | 425 | 102 | 13.907 | ||
| SUPERFAMILY | 333 | 420 | 88 | 1.62E-8 | ||
| Pfam | 340 | 421 | 82 | 2.5E-4 | ||
| CDD | 340 | 419 | 80 | 1.1355E-7 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0570000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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