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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0573600 |
| Transcript ID | LotjaGi1g1v0573600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Lectin protein kinase family protein; TAIR: AT5G01090.1 Concanavalin A-like lectin family protein; Swiss-Prot: sp|Q9LSS0|LRK17_ARATH L-type lectin-domain containing receptor kinase I.7; TrEMBL-Plants: tr|I3SVK2|I3SVK2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0573600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:110782422..110784067) extracted from Lotus japonicus Gifu genome v1.2.
GAAAGAAACATAATTAACCCTTTAAATTATATTCCCTTGTTTGGGTCGCACTGAGAGAAAGTGTAACTAGTAAAGTGCAC AAGAAGTTGCAGAATATGAGTTAAAACCTTATTTAATTTTCACAACCTCCAACTTCAACAACTTGCCTAAGATTCTTAAA CTTTCTTCCTCGGTTTTCTTTCTTTCTTCACTCTCAAACCCTAGAACCAACCACCTTTATTACCTTTCTGATATGCAAAT GGGATCAACCCACCAACACTAGAGCCATACCCACCCAGATTTACCTCATACCCACTTCAATTATGTCACCATTTTCCACT TCCCACCATTTCACAGCCTTAACCTTCCTCATCTTCTTCCTCAAAACCCAAGCTTCTGATTCAGTTTCATCTTTTGCTTT CACAAATTTTGGAAAAGATCCAAAATTCAACTCAAGTGTGGGACTTTATGGCAATGCAAGGCTTGTCAATGGTGGTTCTC AAGTTTTTCTTTCTGGGTATGGGAATTCTGGGAGTGGGAAAGTCATGTATAAGAAGCCCATTAAGCTTGTTGATGGTAAT GCAAGGGGATGTGTCTCATTTCAAACCTACTTTGCATTCTCAATCTCCTTGGATGATGGGAATGGCTTGGCTTTTGTTTT AGTCCCAAGTGGTCTTGAAGGTGAGGTTTTTAGTAACACTTCATCTGGGTTTTCTTTTGGATTGAAGAATAGGGAGTTTA AGGCTATTGGTGTTCAGTTTAGTGCTTCAAAGGATGGTAGCAATGAAGGTTCTGCTAGTTTTAATGTGGCTGTGGCAATT AATTTTGGTAGTTCTGTTCCTGCTAAAATTATCAATACCTCTTCTGTGAACATGAGTCTAAGAAGTGGGGGAAAGTTGCA TGCTTGGATTGATTATGAAGCGAGTTCAAGGCGCATTGAAGTTAGATTGAGTCAATATGGTCAATCAAGGCCTGCTGATC CATTGCTCTGGCACTCAATTGATTTCTCAAATGTGCAGGAGGATAAAGAGATGTTTGCAGGCTTTAGTTCAGTGAAAGGG AATAATACTTCTCAAGCATGCTTTCTTTATTCATGGAGCTTTCGCGCGAGGCATTTTCCACACTGGATGCATTCTGAGCC TCTGGATCCCAAGATCGTTGCTAAGAACGCTGAAACTCCGGCAGTGAAATCAAGGAGTGATTGCCTTTCAAAAGTTCTTG CTGCAATGATATTTGGCGCTGGATGTGGAGCATTGACGGCATTCATGGTACTTTATTTCTGGACCATCTTTGGTAACAGA CGTCCGGTGGTGCCGGAGGAGTATGTTGTGCAGCCTGTAGATTTTGAGTACAAGAAAGTGAATATTGTTGTAGATAAAAC AATTAACGATGCTAAGGAGTAGATCTACGGAAGGGAACTAGTTGAATGCTTGTGTTGTAAATCAGTGTTTCTTGTATTCA GGTTTTGCTTTGTTGTAGTTTGGTAAACAACTATTTAATTAACTTTTTGTTATGTCATTGTCCATTTTTTTAGTAAATTG AGATCAAGATCCAACTCTGCTTTCATGGTTACATGGTTTGCTTCTTATTTTTTTCCTTTTCGAAATATGATCAAATCTAA GTTAAGGATGTATAATTTGATGATGCTGACCTAGGTTTTGTTGCAC
CDS sequence (LotjaGi1g1v0573600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCACCATTTTCCACTTCCCACCATTTCACAGCCTTAACCTTCCTCATCTTCTTCCTCAAAACCCAAGCTTCTGATTC AGTTTCATCTTTTGCTTTCACAAATTTTGGAAAAGATCCAAAATTCAACTCAAGTGTGGGACTTTATGGCAATGCAAGGC TTGTCAATGGTGGTTCTCAAGTTTTTCTTTCTGGGTATGGGAATTCTGGGAGTGGGAAAGTCATGTATAAGAAGCCCATT AAGCTTGTTGATGGTAATGCAAGGGGATGTGTCTCATTTCAAACCTACTTTGCATTCTCAATCTCCTTGGATGATGGGAA TGGCTTGGCTTTTGTTTTAGTCCCAAGTGGTCTTGAAGGTGAGGTTTTTAGTAACACTTCATCTGGGTTTTCTTTTGGAT TGAAGAATAGGGAGTTTAAGGCTATTGGTGTTCAGTTTAGTGCTTCAAAGGATGGTAGCAATGAAGGTTCTGCTAGTTTT AATGTGGCTGTGGCAATTAATTTTGGTAGTTCTGTTCCTGCTAAAATTATCAATACCTCTTCTGTGAACATGAGTCTAAG AAGTGGGGGAAAGTTGCATGCTTGGATTGATTATGAAGCGAGTTCAAGGCGCATTGAAGTTAGATTGAGTCAATATGGTC AATCAAGGCCTGCTGATCCATTGCTCTGGCACTCAATTGATTTCTCAAATGTGCAGGAGGATAAAGAGATGTTTGCAGGC TTTAGTTCAGTGAAAGGGAATAATACTTCTCAAGCATGCTTTCTTTATTCATGGAGCTTTCGCGCGAGGCATTTTCCACA CTGGATGCATTCTGAGCCTCTGGATCCCAAGATCGTTGCTAAGAACGCTGAAACTCCGGCAGTGAAATCAAGGAGTGATT GCCTTTCAAAAGTTCTTGCTGCAATGATATTTGGCGCTGGATGTGGAGCATTGACGGCATTCATGGTACTTTATTTCTGG ACCATCTTTGGTAACAGACGTCCGGTGGTGCCGGAGGAGTATGTTGTGCAGCCTGTAGATTTTGAGTACAAGAAAGTGAA TATTGTTGTAGATAAAACAATTAACGATGCTAAGGAGTAG
Protein sequence (LotjaGi1g1v0573600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSPFSTSHHFTALTFLIFFLKTQASDSVSSFAFTNFGKDPKFNSSVGLYGNARLVNGGSQVFLSGYGNSGSGKVMYKKPI KLVDGNARGCVSFQTYFAFSISLDDGNGLAFVLVPSGLEGEVFSNTSSGFSFGLKNREFKAIGVQFSASKDGSNEGSASF NVAVAINFGSSVPAKIINTSSVNMSLRSGGKLHAWIDYEASSRRIEVRLSQYGQSRPADPLLWHSIDFSNVQEDKEMFAG FSSVKGNNTSQACFLYSWSFRARHFPHWMHSEPLDPKIVAKNAETPAVKSRSDCLSKVLAAMIFGAGCGALTAFMVLYFW TIFGNRRPVVPEEYVVQPVDFEYKKVNIVVDKTINDAKE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 24 | 24 | - | – | |
| PANTHER | 1 | 356 | 356 | 7.9E-147 | – | |
| PANTHER | 1 | 356 | 356 | 7.9E-147 | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| Phobius | 10 | 20 | 11 | - | – | |
| Phobius | 21 | 24 | 4 | - | – | |
| Phobius | 25 | 297 | 273 | - | – | |
| Gene3D | 27 | 284 | 258 | 4.9E-37 | – | |
| Pfam | 30 | 272 | 243 | 4.6E-38 | ||
| SUPERFAMILY | 30 | 268 | 239 | 2.88E-32 | ||
| TMHMM | 298 | 320 | 23 | - | – | |
| Phobius | 298 | 320 | 23 | - | – | |
| Phobius | 321 | 359 | 39 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Carbohydrate binding | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. |
Expression pattern of LotjaGi1g1v0573600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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