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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0575800 |
| Transcript ID | LotjaGi1g1v0575800.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Expansin; TAIR: AT2G39700.1 expansin A4; Swiss-Prot: sp|O48818|EXPA4_ARATH Expansin-A4; TrEMBL-Plants: tr|A0A151TMA5|A0A151TMA5_CAJCA Expansin-A4; Found in the gene: LotjaGi1g1v0575800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:111271293..111272875) extracted from Lotus japonicus Gifu genome v1.2.
TTCCTGGCCAGAGTGCTCTGCCTCTACATGGCTTCACTCATATCCTTAATGTGGATGGTTCAGGCTAGAATTCCAGGGGT TTACACTGGTGGTGCTTGGCAAGGTGCTCATGCTACCTTCTATGGAGGTTCTGATGCTTCAGGCACCATGGGTATGTAAT GTTGTAACATGTTGCTAAATTTTCAATTTATGTCTATGCATAACTACACATAAATTGATTTTGGCATTGTTGATTTCAGG TGGAGCATGTGGGTATGGAAACTTGTATAGCCAAGGGTACGGCGTGAACACGGCGGCGCTGAGCACGGCGCTTTTCAACA GTGGCCTGAGCTGCGGTGCTTGCTTTGAGATCAAGTGCGCCAACGACAAGCAGTGGTGTCACTCCGGCAGCCCTTCCATC TTCATCACCGCCACTAACTTCTGCCCTCCGAACTACGCTCTCCCCAACGACAATGGTGGCTGGTGCAATCCTCCTCGCCC ACATTTTGACCTCGCCATGCCCATGTTCCTCAAGATCGCTGAGTACCGCGCCGGCATCGTCCCCGTCGCCTATCGCCGGT ACCAAACTCATTTCACTCTTTTCCTGATTCTAAAATTTAGTTAATGTTGGTTTCATTTAGTTTTCAATTCCTAAAAATAT AATATTAATATTTATTTTAGTCCTAACCATTAAGTTTTGCTTAAGAAAACGATACTCACATATGAGAGATTTGTCACTGA ATCACTCGCCAATGAAGAACTTTTCACCAATAGAATAGCTTTATTGGTCAGTAAATTAATTCTAACATATGAGAGATTTT TCTTAAGAGGAGAAATATATACATAAGAATAATTCGTGACCGTTAGATTTAATCATGAATGATTAAGATTAAAACAACTT AGTGATCATTTGATCACTTAAAAATGTTATGTGACTTTCTGGACAGTTTATGATTAAATCTAACGGTTGTGATTTATTCT CATTTTTTCACATAACATCACCTTTATCATAAGATACATCATCTATATATTAAATGAGAAATGTTGAGAAACAATCTCTT TCAATAACATAGATATAGTAGCCTAGTCAACCAAAAGGTTTTTTTGTTTGATAAAAATATGTTTAGAGCAGTGAACAAGA TATTTAAATTATATTTGTGAGTTGTGAGCAAGGTGTGTGAAATGTGAATGTAGTTAGTTATGCTTGAAGTGGTGGTTGTT TTGCTTTATGGGTCCATACCCTATTGATGATAAATGACTAATGAGTGTTTTGGTTTGGTTGATATTTACGCAGGGTGCCA TGCAGGAAGCCTGGTGGGATCAGGTTCACAATCAACGGCTTCCGTTACTTCAACCTAGTTCTGATCAGCAACGTCGCGGG TGCAGGGGATGTTGTGCGCACCTACGTGAAGGGCACCCGAACCGGTTGGATGCCGATGAGTAGGAACTGGGGTCAAAATT GGCAGTCAAACGCCGTTTTGGTGGGCCAGGCCCTGTCATTCCGTGTCACCGCCAGCGACCGTCGCACGTCCACCTCCTGG AACATTGCTCCGGCACATTGGCAATTCGGTCAAACTTTCACCGGGAAGAATTTCCGGGTCTAA
CDS sequence (LotjaGi1g1v0575800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCACTCATATCCTTAATGTGGATGGTTCAGGCTAGAATTCCAGGGGTTTACACTGGTGGTGGAGCATGTGGGTA TGGAAACTTGTATAGCCAAGGGTACGGCGTGAACACGGCGGCGCTGAGCACGGCGCTTTTCAACAGTGGCCTGAGCTGCG GTGCTTGCTTTGAGATCAAGTGCGCCAACGACAAGCAGTGGTGTCACTCCGGCAGCCCTTCCATCTTCATCACCGCCACT AACTTCTGCCCTCCGAACTACGCTCTCCCCAACGACAATGGTGGCTGGTGCAATCCTCCTCGCCCACATTTTGACCTCGC CATGCCCATGTTCCTCAAGATCGCTGAGGTGCCATGCAGGAAGCCTGGTGGGATCAGGTTCACAATCAACGGCTTCCGTT ACTTCAACCTAGTTCTGATCAGCAACGTCGCGGGTGCAGGGGATGTTGTGCGCACCTACGTGAAGGGCACCCGAACCGGT TGGATGCCGATGAGTAGGAACTGGGGTCAAAATTGGCAGTCAAACGCCGTTTTGGTGGGCCAGGCCCTGTCATTCCGTGT CACCGCCAGCGACCGTCGCACGTCCACCTCCTGGAACATTGCTCCGGCACATTGGCAATTCGGTCAAACTTTCACCGGGA AGAATTTCCGGGTCTAA
Protein sequence (LotjaGi1g1v0575800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASLISLMWMVQARIPGVYTGGGACGYGNLYSQGYGVNTAALSTALFNSGLSCGACFEIKCANDKQWCHSGSPSIFITAT NFCPPNYALPNDNGGWCNPPRPHFDLAMPMFLKIAEVPCRKPGGIRFTINGFRYFNLVLISNVAGAGDVVRTYVKGTRTG WMPMSRNWGQNWQSNAVLVGQALSFRVTASDRRTSTSWNIAPAHWQFGQTFTGKNFRV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 13 | 13 | - | – | |
| Gene3D | 10 | 125 | 116 | 6.5E-28 | ||
| SUPERFAMILY | 20 | 142 | 123 | 1.15E-41 | ||
| PANTHER | 20 | 218 | 199 | 5.3E-131 | – | |
| PANTHER | 20 | 218 | 199 | 5.3E-131 | – | |
| PRINTS | 21 | 39 | 19 | 2.8E-35 | ||
| ProSiteProfiles | 22 | 115 | 94 | 24.034 | ||
| PRINTS | 34 | 48 | 15 | 3.0E-59 | ||
| Pfam | 39 | 117 | 79 | 1.4E-16 | ||
| SMART | 39 | 121 | 83 | 9.0E-46 | ||
| PRINTS | 43 | 61 | 19 | 2.8E-35 | ||
| PRINTS | 61 | 72 | 12 | 3.0E-59 | ||
| PRINTS | 75 | 85 | 11 | 3.0E-59 | ||
| PRINTS | 107 | 123 | 17 | 2.8E-35 | ||
| SUPERFAMILY | 121 | 213 | 93 | 1.96E-33 | ||
| PRINTS | 123 | 135 | 13 | 3.0E-59 | ||
| Pfam | 125 | 202 | 78 | 1.3E-24 | ||
| Gene3D | 126 | 216 | 91 | 2.5E-21 | ||
| ProSiteProfiles | 134 | 213 | 80 | 21.042 | ||
| PRINTS | 135 | 156 | 22 | 3.0E-59 | ||
| PRINTS | 161 | 175 | 15 | 2.8E-35 | ||
| PRINTS | 170 | 191 | 22 | 3.0E-59 | ||
| PRINTS | 199 | 213 | 15 | 2.8E-35 | ||
| PRINTS | 199 | 215 | 17 | 3.0E-59 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Extracellular region | The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. | ||
| Biological process | Plant-type cell wall organization | A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. |
Expression pattern of LotjaGi1g1v0575800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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