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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0581600 |
| Transcript ID | LotjaGi1g1v0581600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT5G16420.1 Pentatricopeptide repeat (PPR-like) superfamily protein; Swiss-Prot: sp|Q9FFE3|PP388_ARATH Pentatricopeptide repeat-containing protein At5g16420, mitochondrial; TrEMBL-Plants: tr|G7L4F1|G7L4F1_MEDTR PPR containing plant-like protein, putative; Found in the gene: LotjaGi1g1v0581600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:112088989..112093158) extracted from Lotus japonicus Gifu genome v1.2.
TGTTATCTGACTTCCACTTCTGTGCAAAGAAAATCTAAAAGAGAATGTTGCTAACATTTCTCATTTTATATATATGTTCA AACCAAACAAAGTCTTAGTTTAACTTAATCCCAATCTGAAAACCTTGTAGCACCAATGCTTCACTCCCCGATGTCCCGTC CCAGCCGTATCCTCCCCACCCAACACAACCTCCTCCAATTCTCCACTTCTGCCGCCGCCATCGCCGCCAATACTGCCGCT GCGCCGACCACCCTCCCTGAATCATACACCATTCAGCCCCCAATCAAACCCTGGCCCCACCGCCTCCACCCAAAACTCCT CGCCTCCCTCATCTCCCGCCAACACGACCCCCACCTCTCCCTCCAAATCTTCCGCCACGCCCAAACCCACCACCGCGCCT CCTCCCACCACCCTCTCCCCTACCGTGCCATCTTCCTCAAACTCTCCCGCGCCCGCTGCTTCCCTGAAATGGAGTCCCTC CTCTCCACCCTCCCCCGCCATTCGCCGCAGCAGTTCCTCGATCACTGCGGTGAGGACCCGCTCGTAACCGCCATCCGCGG TTACGGTCTCGCCGGAAAGCCCGACTCCGCACTCCGGACCTTCCTGAGGATCGAATCGCGGCTCGGGATTCGACCCTCAG TGAGGTTACTCAACGCATTGCTCAATGCGTTGGTTCAGAACAAGCGTCACCGCTTGGCGCATTCGGTGTTCAAGAACTCT AGAACAAGGTTTGGGGTTTCCCCTAATGTGGTTAGTTGTAACATTTTGCTTAAGGCCCTTTGTAAGGTGAATGAGGTTGA GGTTGCGGTTAGGGTTTTGGATGAGATGCTTGGGATGGGTTTGGTTCCCAATGTGGTTAGTTACACCACTGTTATGGGGG GTTATGCTTGGAGGGGTGACATGGATGGTGCCATGAGGGTTTTAGGTGAGGTTTTGGATAAAGGGTGGGCGCCGGATGCG ACTACTTACACTGTTTTGGTGGATGGGTTTTGTAGGCAAGGGAGGTTGGTGGCTGCAATTAAGGTGATGGATGATATGGA GGAGAATGGAGTTCAGCCCAATGAGGTTACTTATGGTGTTATGATTGAAGCTTATTGCAAATGGAAGAAGCCTGGGGAGG CGGTTAACTTGCTTGAGGACATGGTTAGGAAGGGTCATGTTCCGAGTTCGGGGCTGTGTTGTAAGGTTGTTGATGTGCTG TGTGAGGAAGGGAATGTGGAGAGAGCTTGTGAGGTGTGGAGGGTTTTGAGGAAGATTTGTGGCTCTGATAATACCGTGGC GAGTACGCTCATACATTGGCTTTGCAAGAAGGGGAAGGTGCTGGAAGCGAGGAATGTGTTTGAAGAATTTGAGGGTGGCT CGGTCGCTAGTCTCTTGACGTATAACACTTTGATTGCAGGATTGTGTGAGAGAGGAGAGCTTTGTGAGGCGGCAAGACTG TGGGATGACATGGTGGAGAAGGGTCGTGCTCCTAATGCTTTTACCTATAACTTGTTGATTAATGGGTTCTGTAAGGTTGG AAATGCAAAGGAGGGCATCAGAATTCTGGAGGAGATGTGTGAAAATGGTTGTTTGCCTAACAAATCAACCTACTCAATAT TGATTGAGGGCCTTTTGCTTTCAGGAGGAATGAATCAAGAAATCAACAAGGTAGTTGCACTGGCCATGTCCACAGGAGTT GATGGTGAATTGTGGGATCTTTTGGTAAAGCATGTTGTAGGTAATTTAGATATCAATGCGACTGAGCTTGATAGGATATT GATACCGAATGCAGTGTGATAATGTAAACTCCTTGGGGTATGCTGTTGTGTCTGATCTTTGGAAGGTGATGGCAGAAGGA GATTAAAAACTGAGGGCTGTTTATCCATTTAGAGGTATTCTCATAGCTCAGTACTTTCCAGTTAGTAAACTTATCGTGTT AATCATTTGACTGGAAGCTATTTCTTTGATTTTTTTTATCATTCATTCAACATGACTAATATCCTTGATTTGCAGGACAA GATATTTCATATATACTTATACCACAGTCTCGGCTGGAATGCAAGAAAATTTGGAAGTTGTGACCATACCTCGCCTGTAT GTTGTCTTACCTGTTTGCTCTTCCCCTGCCCCAGTTCCCATATTTATGAAAAATTTAGTCCCTTTAGCTTGTAGTCAGCT GCTTATGTATAATGCCAACTGAGATTAGTTCATCCAGTAATGATGCTGGAAAGTCTTAGGTTCAGTTCTTGCTGACACTG ATGTCCCTAATTGGTTGATGATTTGTAAATATTTAATATGCCTCAGTCTCTTATCTACTTCTCAACTTTTATTAATCAAA ATGAAAAAAATAACTGCCTATCTTTGATGAAATGAAAAGGGAAGAACATATTGTAGGATGAAGAAAAGAAATTACCTAAC CATTCATAAATAACTAACTAGATAGCATGTATTCAAGTGATTGAAAGTTCTTAATATTGCAACCTACAGCTAGATGCTTG TTTTGTTCAATCTAGCTATAGTATTGTAAAGAAACGGGAATAATACAATTGAAAGCAACTACAAGTTTATGCAACGATTT TCTATTTAAATGAATTAGTAAATACTAAATACACATATGAAAATGAACCTGGACTACTTTGAATCATTAAAAATTACATA CATTTGCTAATTTATTTTTAACTACCTGGTTCTGCTGGAAGAAAATATTTGAAGTGCTGCTCAAATACCAGGATCAGTAT ATTAAGCGTACTTAAACAATTCTTCCAAGATTTTTCACTTACCCATGTTGCTTCCTTGTAGATATTTCACTTGCCAATGT TGCTTAGTTATTTCCAGGCTTTTGCCATGTTGAAGCTGCTTCACTATTTTCTTATATGTGCTCTGCTGCAATTCTTCGAT CATTTAATGGTGTCTTCGCAATCATATGCAGGTTAATTCTAATGACATAATATCTCACCATTTTCTGATATGTGCTCTGC TGCAATTCTTCGATCAATTAATGGTGTTTTAGCAATCGTATGCAGGTTAATTCTAATGACATAATATCTCACTTGAAACA ACACTTGATGATGGAAAGTCGATGATTCCTGCAATGGTCCTCTCCTGGTTTCTCCCCTGAACTAGACAGAGTTCTCCTTG GATGAAAATCAAATCTCTCATTCATTTTCTGGATCTGGTAATTTCTCATATAAATAATAAATATGCCTACTTTCAATTAT TTACCTCATTTCTCATTTCCGTCATCTTAAATTGAACTCGACTGCTTAGCGTTAGAGCTGAATATCTAATTGTAGCCTTG TAGGCATGCCCTGTTTTGCACCTGAAAGTGAGGTCAGATAGAATTTGAATTAAATCTATCTAAATGTGTGATAATTGCTA CCTAGACAATCTATGGTTCTGTCTATCCACTATACCCATTATTGTATAAATCTCATGTGCATCACACTAAATAGAAAATG GATTCAAATTATTTTGTCAGTGAGACCCTCGTGAAATTCATTTAATAATCAAGTAGTGTGTGTGTGTGTGTGTTACAAGT ATTTCACTTAGAAGCTTTCCTTTACAACAACTCATTTAGACCTCTTATATCATTTCCAATGTAAGACATGCTTGTTTTCA CCAATATTTTTTTCACTTATTTCCTAGTTTCTGTAGACTGTAGAGCACCCCGCCGTTGGGAAGAACTCGGATTTCTCAAA GCTTCAAGCAATTGATGATTATGAGGATGGAAGTAGAAGAATGGGAAGTGAGGAGAGGAAGGAAGAAAAACAATGGCATT CTTGCAAGGATAAAAAGCAAGAGAAGGGACATTCTCGTGATTTAAGTGGCAGGAAGAGAAATGTGATGTTCAAAGCTGGA AAGTCCTGTAAAAGAGAAATGTTAATGCTTTGAAGTTTGAAGTCGGAGTGCTTTGTCAAGTAGAAAGGGAAAAAAATGAA GTATGTCGTAGGAAAAAAATGGTTCTCTCATATATATATATATATAGAAAGTATTGAGAAACAACTCCTCTCTACGTGGG TAAAGTAACCTATCAGGCAGAATAAATCTGAAACTATAGCAAAAACCTCGAAAAGCCCCGAAAACACCAAAGCGCTTAAA CAAGCCAAACCCCTAGCGTCTACCCCACTGATTAGGTTCCCATTAAAATTGAAAAATGACGACAAGTTCAACTGACAAGG AAGCCGCTTG
CDS sequence (LotjaGi1g1v0581600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTCACTCCCCGATGTCCCGTCCCAGCCGTATCCTCCCCACCCAACACAACCTCCTCCAATTCTCCACTTCTGCCGC CGCCATCGCCGCCAATACTGCCGCTGCGCCGACCACCCTCCCTGAATCATACACCATTCAGCCCCCAATCAAACCCTGGC CCCACCGCCTCCACCCAAAACTCCTCGCCTCCCTCATCTCCCGCCAACACGACCCCCACCTCTCCCTCCAAATCTTCCGC CACGCCCAAACCCACCACCGCGCCTCCTCCCACCACCCTCTCCCCTACCGTGCCATCTTCCTCAAACTCTCCCGCGCCCG CTGCTTCCCTGAAATGGAGTCCCTCCTCTCCACCCTCCCCCGCCATTCGCCGCAGCAGTTCCTCGATCACTGCGGTGAGG ACCCGCTCGTAACCGCCATCCGCGGTTACGGTCTCGCCGGAAAGCCCGACTCCGCACTCCGGACCTTCCTGAGGATCGAA TCGCGGCTCGGGATTCGACCCTCAGTGAGGTTACTCAACGCATTGCTCAATGCGTTGGTTCAGAACAAGCGTCACCGCTT GGCGCATTCGGTGTTCAAGAACTCTAGAACAAGGTTTGGGGTTTCCCCTAATGTGGTTAGTTGTAACATTTTGCTTAAGG CCCTTTGTAAGGTGAATGAGGTTGAGGTTGCGGTTAGGGTTTTGGATGAGATGCTTGGGATGGGTTTGGTTCCCAATGTG GTTAGTTACACCACTGTTATGGGGGGTTATGCTTGGAGGGGTGACATGGATGGTGCCATGAGGGTTTTAGGTGAGGTTTT GGATAAAGGGTGGGCGCCGGATGCGACTACTTACACTGTTTTGGTGGATGGGTTTTGTAGGCAAGGGAGGTTGGTGGCTG CAATTAAGGTGATGGATGATATGGAGGAGAATGGAGTTCAGCCCAATGAGGTTACTTATGGTGTTATGATTGAAGCTTAT TGCAAATGGAAGAAGCCTGGGGAGGCGGTTAACTTGCTTGAGGACATGGTTAGGAAGGGTCATGTTCCGAGTTCGGGGCT GTGTTGTAAGGTTGTTGATGTGCTGTGTGAGGAAGGGAATGTGGAGAGAGCTTGTGAGGTGTGGAGGGTTTTGAGGAAGA TTTGTGGCTCTGATAATACCGTGGCGAGTACGCTCATACATTGGCTTTGCAAGAAGGGGAAGGTGCTGGAAGCGAGGAAT GTGTTTGAAGAATTTGAGGGTGGCTCGGTCGCTAGTCTCTTGACGTATAACACTTTGATTGCAGGATTGTGTGAGAGAGG AGAGCTTTGTGAGGCGGCAAGACTGTGGGATGACATGGTGGAGAAGGGTCGTGCTCCTAATGCTTTTACCTATAACTTGT TGATTAATGGGTTCTGTAAGGTTGGAAATGCAAAGGAGGGCATCAGAATTCTGGAGGAGATGTGTGAAAATGGTTGTTTG CCTAACAAATCAACCTACTCAATATTGATTGAGGGCCTTTTGCTTTCAGGAGGAATGAATCAAGAAATCAACAAGGTAGT TGCACTGGCCATGTCCACAGGAGTTGATGGTGAATTGTGGGATCTTTTGGTAAAGCATGTTGTAGGTAATTTAGATATCA ATGCGACTGAGCTTGATAGGATATTGATACCGAATGCAGTGTGA
Protein sequence (LotjaGi1g1v0581600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLHSPMSRPSRILPTQHNLLQFSTSAAAIAANTAAAPTTLPESYTIQPPIKPWPHRLHPKLLASLISRQHDPHLSLQIFR HAQTHHRASSHHPLPYRAIFLKLSRARCFPEMESLLSTLPRHSPQQFLDHCGEDPLVTAIRGYGLAGKPDSALRTFLRIE SRLGIRPSVRLLNALLNALVQNKRHRLAHSVFKNSRTRFGVSPNVVSCNILLKALCKVNEVEVAVRVLDEMLGMGLVPNV VSYTTVMGGYAWRGDMDGAMRVLGEVLDKGWAPDATTYTVLVDGFCRQGRLVAAIKVMDDMEENGVQPNEVTYGVMIEAY CKWKKPGEAVNLLEDMVRKGHVPSSGLCCKVVDVLCEEGNVERACEVWRVLRKICGSDNTVASTLIHWLCKKGKVLEARN VFEEFEGGSVASLLTYNTLIAGLCERGELCEAARLWDDMVEKGRAPNAFTYNLLINGFCKVGNAKEGIRILEEMCENGCL PNKSTYSILIEGLLLSGGMNQEINKVVALAMSTGVDGELWDLLVKHVVGNLDINATELDRILIPNAV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 35 | 35 | - | – | |
| Phobius | 1 | 18 | 18 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
| Phobius | 19 | 30 | 12 | - | – | |
| Phobius | 31 | 35 | 5 | - | – | |
| Phobius | 36 | 547 | 512 | - | – | |
| PANTHER | 60 | 368 | 309 | 4.6E-107 | – | |
| PANTHER | 60 | 368 | 309 | 4.6E-107 | – | |
| Gene3D | 62 | 265 | 204 | 2.1E-27 | ||
| ProSiteProfiles | 132 | 167 | 36 | 6.544 | ||
| Pfam | 139 | 161 | 23 | 1.4 | ||
| ProSiteProfiles | 168 | 203 | 36 | 7.673 | ||
| Pfam | 203 | 251 | 49 | 2.3E-13 | ||
| ProSiteProfiles | 204 | 238 | 35 | 11.882 | ||
| TIGRFAM | 206 | 240 | 35 | 9.1E-9 | ||
| PANTHER | 235 | 404 | 170 | 4.6E-107 | – | |
| PANTHER | 235 | 404 | 170 | 4.6E-107 | – | |
| ProSiteProfiles | 239 | 273 | 35 | 10.874 | ||
| TIGRFAM | 241 | 275 | 35 | 1.4E-4 | ||
| Gene3D | 266 | 378 | 113 | 1.9E-28 | ||
| ProSiteProfiles | 274 | 308 | 35 | 13.318 | ||
| TIGRFAM | 277 | 310 | 34 | 1.0E-9 | ||
| Pfam | 280 | 322 | 43 | 8.9E-14 | ||
| ProSiteProfiles | 309 | 343 | 35 | 12.627 | ||
| TIGRFAM | 311 | 344 | 34 | 6.6E-9 | ||
| ProSiteProfiles | 344 | 374 | 31 | 6.292 | ||
| PANTHER | 375 | 496 | 122 | 4.6E-107 | – | |
| PANTHER | 375 | 496 | 122 | 4.6E-107 | – | |
| ProSiteProfiles | 378 | 408 | 31 | 7.311 | ||
| Gene3D | 379 | 513 | 135 | 3.8E-33 | ||
| Pfam | 383 | 405 | 23 | 0.0059 | ||
| ProSiteProfiles | 412 | 446 | 35 | 12.266 | ||
| Pfam | 414 | 460 | 47 | 6.4E-17 | ||
| TIGRFAM | 415 | 448 | 34 | 2.7E-7 | ||
| ProSiteProfiles | 447 | 481 | 35 | 13.658 | ||
| TIGRFAM | 449 | 482 | 34 | 2.3E-10 | ||
| ProSiteProfiles | 482 | 517 | 36 | 6.029 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0581600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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