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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0587700 |
| Transcript ID | LotjaGi1g1v0587700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT5G48730.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9FKC3|PP424_ARATH Pentatricopeptide repeat-containing protein At5g48730, chloroplastic; TrEMBL-Plants: tr|A0A072TZW2|A0A072TZW2_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi1g1v0587700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:112803836..112808748) extracted from Lotus japonicus Gifu genome v1.2.
AGCCAATGTAGGACTTCGAACATTTTCCTTCCTCCAACCAACCATCTATGCGTTCTTTTTTTGAAACTAACGATCTATGT TGATATTTGACTAATTTTAAACCATCAGTACATAAAAATTAAACTCTAATTAAAAACATAAAACTTCTTTTAAAAAATTA TTAATTTAATTTACTACGAAATATCCATTTTCCTCTTGGTAATGGTTGATGTGGATATTTGCGTTCCTTACTCTTTTTCT CTGCTCTCCCAAACCGATCCAAACAAAATCCAATGGCTTCACTCTCCACCATCACCACCACTCGCGGCACTCATTTCCCT CCAACCACCACCACCACCCGTCGAACCTCTTCATTTCGGGCACAAACCTTAACCCGACCCGAATCCGAGCCACAACCTCC TTCTCCTTCCTCCGTTGCCGGCGCAGAGAAACTACGGACCACACCAATGGCGGTGACCGTTGATGAACGGACCCGAAGGA TAGCGAAGGAAGTGGAGAAGCTGAAGAAGAAGGAAGCGAAGGAGAGGAAGGAGATGAAGAACAGCAAGATAGCGTCGCAG AAAGCAGTTTCAGTGATACTGCGGAGAGAGGCCACCAAGGCTATCATTGACAAGAGAAGGAAGAAGGGTCCAATCAATTC CAAGAAGCTTCTGCCTAGAACAGTGCTTGAAGCGCTTCATGAGAGGGTCACTGCTTTGCGTTGGGAATCTGCACTCAAGG TTTGTTTGTTTCTTTTTTGTTTTTGGTATGAATGTGATGGTGGATGTGGAGTTTCATTGAGTTGGTTTTTATGTTTTGTA GAGAAATGGGTTTGTAGTTTTGTTTTCTTTGCAATGTTAGTTTGGTTGGTTTAGATTGATAGTGTTTGATTGTCTGGCCA TGTAGGAGTTTCTTTGTTTGATTGAATGTGGAGTTCAATTGAGTTGGTTTTGGGGTCTTGTAGAGAAATGAATCAGTGGA TTATTCATTGGTTTTGTACTGATGTCTTTCTGTGCTTTGTTTGGTTGGATTGTGAGTGGGGAGAAAGTTGAGTTCTTATT TTCATGGGCTAGTGTTGGACTGTGAGGCGACTTAGGCAAGATAAGACAAGCTGGATATGTCATTTATTTGAAATTTCACT CAATAAGATTATCTTTAGAGTAAATGAGATTAAAAAGATGAGGCTTACCGCAGTCTTGCTGTTTGTGAAATAGGAAAGAA CAGAAACATGTGTGGTTCTTAGATTTTACTTGATGATTTTAATAGAATTTTTCAATAGCTTTCGGGGGAACAGTTATTTT AGAAGGATTTGCAGTTACGAAGCAAGTAAAAAAAAACTGGTACGTGAGAGACTTTGGGAACAGCCTTGGAATTAGATGAA TATGTTATTTGATTGTTTGGAGCTCAGGAAAGAGAATGCTAACAGGATATCAACAAAATAGTCTTTGCTTGAATTGTTAG TCCAGGGATCATTTTTGTTACCATATGACCCCATGCTAGTAACTTCTGTGATTGACATGCTTTCCAGTTTAGTTCAAACA TATATGTTTTCCATTGTAACTGTCGTAATATGAATGATTTTGGTGTTTGCTATGTAGCTTGAGATTGTTCTGAGCCAACT TTTGCTTGAAAACATGGGAAAAGGAAAGTTAAAACAAATTAGATGAGTACTTTTTCCATGTTAATCTTTGGGAATTGAAT TTTGGTTAACTTTTGGGTAAATAGTTTGTTAGATGGATGTGAAAGTAAAACTTATGTAGGAGTATAAGTGTAATTGATCC AGGTATATACACTATTATTATAGGTAAAAGTACATAGAAACTCTCTAATTACAGAAATGAAAAAGAGTACTAGTATTGAA GCAGAGAAAGATTAATAAGGAGAAACTCTGAGAAACAGAGTGATACGCTTCCCCAAGCCTAATCCACACGTAATTTCTTT AATAGATTTGATGCCTCCGTCTTGTCCATCCCCTTCATCATACTCCCACCACTCCCCATGTTTTCCACACCCGTCTCCAA GTCCTGCTGTCACATGCGAATTCTGTTTAACTCTAGTAGCGTATGAGTTTCTTATAAGCAAGTTTGGAGCTTAAAATTAA GTTTGGAGCTTCTATAAGAAACCAGACCTTATTATTAAAATAACATTCTCTCTCTCTCTCTTAACCCACAATGAGCATCA AGTTGCAACCCAAATCGAATTACAAATAAAAAGTATATATGTCGGGTCCATTGTGGGATCCAACAATAAAATAAATGAGA AACTACCATTGGAGTAAAAACTAGAAGAGTTGCTTATGCGTAGCTTAAATCTTATGTGGCATTTTGGGTCCAGAAAAACA TTGCTAAGCAACCCTTATAAACAAACTCCCATTGTGGATGCTCTAAGAACTAAGTTCTTTTATCTGGGCTTTGAAAAATT ATGTAGTCAAGGTAAGTTGTGAGTCTGTGACATCAAGTTTCTATCACTGAAGAACCAAATTCATGGTTCATACTCCTAGC AAATTCATGTTCTTCTACTTGTTTTCCCTCATACACACTATCCTGTATTTGATTGGCTAACATTAGAGTATGTTAATCTC TCACTCGCCCTTTCCACCTACTTTTCTATATTTTGCTTCTATTCCAATATCCATTTGAGGAAATGCCAATATTTGTTTTG ATACAATTCAAGAAATATGAAATGTTGAAGGTAGAAGAAATTAAAGATACAAGGAAGCATATTTGCATTTAGGATATAGA AGATAAAATGATAGTTGTGAGCTTGGAATTGAAAATTGTAGCAACAGATGTAAGAATTAAATTGATTTACAAAATGTTAT TTACTGTTGTTTAAGGATTTCATGTACTGAGAAACAAAATAATTTAGGAACTCATTTGCTTGTTTTGCTATTTAAGCACA GTAAAACGAATTTAGAACAATGGTCCAAATGTTACTGCCCCCACCGTCTCTCACACGGATGCTATTGTGAAACTGTCTTC TTTTTATGAAGACTTGACAATCATATGAAATCATGCTGTTATGGTTTCAGGTCTTTGAACTACTGCGTGAACAGCTCTGG TACAGACCTAACTCTGGTGTGTACATCAAGTTAATAGTCATGCTTGGAAAATGTAAGCAACCTGAGAAAGCTCTTGAACT CTTTCAAGCTATGGTTGATGAAGGTTGTGTTGTGGATTGTGAATCATACACTGCATTGTTATCTGCCTACAGCAGAAGTG GTCTCTTGGAGAGAGCTTTCTCTCTTCTTGAGGAAATGAAGAGTACACCTGGTTGTCAGCCAGATGTCCAGACTTACTCA ATCCTCATAAAATCTTGTTTGGAGGTTTTCGCATTTGATAAAGTTCAGGGTCTTTTATCTGACATGGCCATTCATGGAAT CAAACCCAACACAGTTACCTATAATACCCTTATTGATGCTTATGGGAAGGCAAAAAGGTAAACTAGTTACCTTTCCTCTT TATCTTCTCAAAGTACTACATGCTCAGTCAGTTAACGAACTTTGGAAAAAGAATTATATCAAGTATCTACTTTCCATCAT ACTGTAGACATAATCAAACAATTTGAAGAGCTGAGTGATTCTGTCTTTATTAAAGTGCATTTTTTTGCTATAGTTGGGCA TCGAAAAATCATTATCTATAGACTGGGACATATTACATCCCTTCCAACTAAAATTGAGACAAGGAACTGCTCTTTTATTT TAAAAAATATTGATTGTGTCATTAACTAACTACCCTAGAAGCTTTAGTTGTTGGGTGAAGACTCATAGATTGTTTAATAT TATATTTTTAACACGTCCCTTCACGCAAGAGCAAATTAGGCTTGGAGTCTTGACGATGCTCAAACCCACTTACCTTGTGA AACTCAACTTTTTTTATTTATAAGAAAGATGGGGGAAACAAGGATCGAACTTTAGACCACTTTTTCATAGAGGCCCTGAT ACCATGTCATGAACCAATTACCTCAAAAGCTTAAGCTTTTGGTTTGGGTGAAGACGCATGAACGGTTTATATTATATTTC TAACAATTTATTTGCGTGTATTTAATTTATTTAGCAACCAGCTGCAGCATGATCAAATATCATATTTGTTTTCATGTTTC TGTAAGGTTTTCCGAAATGGAATCTACTCTTGTGGAAATGCTAGCTGACCGAGATTGCCAACCGGATGTATGGACCATGA ATTCAACACTCAGGGCCTTTGGCAACCTTGGGCAAATAGACACCATGGAGAGGTGTTATGACAAGTTTCAGACTGCTGGA ATTCAACCTAATGTTCAGACTTTCAATATTCTCTTGGATTCCTATGGCAAGGGTCATGATTACAAGAAAATGAGCGCTGT GATGGAATACATGCAAAAGTACCATTATTCTTGGACAATTGTGACCTATAATATTGTGATTGATGCTTTTGGGAAGGCTG GGGATCTCCAACAGATGGAGTATTTGTTTAGACTAATGCGGTCAGAGAGAATAAAACCCAGTTGTGTTACACTGTGCTCT CTTGTGAGGGCTTATGCACGTGCAGGTAAACCTGAAAAAATTGGTGGTGTCCTGCGTTTTGTTGAGAACTCAGATGTATT ACTGGACACCGTATTCTTTAATTGCTTAGTGGATGCTTATGGGAGGTTAGGGTGTCTTGCTGAGATGAAGGGAGTGCTTG AAATAATGGAACAAAGATGTTGTAAACCCGATGTTGTAACTTACAGAACCATGATTAAAGCTTATTCATTTAAGGGAATG CATACTCATGTTAAGGAGCTCAAAGAGCTCCTTACAACAGTAAAGAGGCCTCCTTTTAAAAGAAACAAGCCTGACTTTTG ATCATAAAATATACTGATATTTTTGCTCCACTGTGTTTGGCTGTCTATGATCTGTTTATTTGTGCATCTGTGGAATGTGG TCTCCTCAAATGTGGCACTCAAACATGTGCTTG
CDS sequence (LotjaGi1g1v0587700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCACTCTCCACCATCACCACCACTCGCGGCACTCATTTCCCTCCAACCACCACCACCACCCGTCGAACCTCTTC ATTTCGGGCACAAACCTTAACCCGACCCGAATCCGAGCCACAACCTCCTTCTCCTTCCTCCGTTGCCGGCGCAGAGAAAC TACGGACCACACCAATGGCGGTGACCGTTGATGAACGGACCCGAAGGATAGCGAAGGAAGTGGAGAAGCTGAAGAAGAAG GAAGCGAAGGAGAGGAAGGAGATGAAGAACAGCAAGATAGCGTCGCAGAAAGCAGTTTCAGTGATACTGCGGAGAGAGGC CACCAAGGCTATCATTGACAAGAGAAGGAAGAAGGGTCCAATCAATTCCAAGAAGCTTCTGCCTAGAACAGTGCTTGAAG CGCTTCATGAGAGGGTCACTGCTTTGCGTTGGGAATCTGCACTCAAGGTCTTTGAACTACTGCGTGAACAGCTCTGGTAC AGACCTAACTCTGGTGTGTACATCAAGTTAATAGTCATGCTTGGAAAATGTAAGCAACCTGAGAAAGCTCTTGAACTCTT TCAAGCTATGGTTGATGAAGGTTGTGTTGTGGATTGTGAATCATACACTGCATTGTTATCTGCCTACAGCAGAAGTGGTC TCTTGGAGAGAGCTTTCTCTCTTCTTGAGGAAATGAAGAGTACACCTGGTTGTCAGCCAGATGTCCAGACTTACTCAATC CTCATAAAATCTTGTTTGGAGGTTTTCGCATTTGATAAAGTTCAGGGTCTTTTATCTGACATGGCCATTCATGGAATCAA ACCCAACACAGTTACCTATAATACCCTTATTGATGCTTATGGGAAGGCAAAAAGGTTTTCCGAAATGGAATCTACTCTTG TGGAAATGCTAGCTGACCGAGATTGCCAACCGGATGTATGGACCATGAATTCAACACTCAGGGCCTTTGGCAACCTTGGG CAAATAGACACCATGGAGAGGTGTTATGACAAGTTTCAGACTGCTGGAATTCAACCTAATGTTCAGACTTTCAATATTCT CTTGGATTCCTATGGCAAGGGTCATGATTACAAGAAAATGAGCGCTGTGATGGAATACATGCAAAAGTACCATTATTCTT GGACAATTGTGACCTATAATATTGTGATTGATGCTTTTGGGAAGGCTGGGGATCTCCAACAGATGGAGTATTTGTTTAGA CTAATGCGGTCAGAGAGAATAAAACCCAGTTGTGTTACACTGTGCTCTCTTGTGAGGGCTTATGCACGTGCAGGTAAACC TGAAAAAATTGGTGGTGTCCTGCGTTTTGTTGAGAACTCAGATGTATTACTGGACACCGTATTCTTTAATTGCTTAGTGG ATGCTTATGGGAGGTTAGGGTGTCTTGCTGAGATGAAGGGAGTGCTTGAAATAATGGAACAAAGATGTTGTAAACCCGAT GTTGTAACTTACAGAACCATGATTAAAGCTTATTCATTTAAGGGAATGCATACTCATGTTAAGGAGCTCAAAGAGCTCCT TACAACAGTAAAGAGGCCTCCTTTTAAAAGAAACAAGCCTGACTTTTGA
Protein sequence (LotjaGi1g1v0587700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASLSTITTTRGTHFPPTTTTTRRTSSFRAQTLTRPESEPQPPSPSSVAGAEKLRTTPMAVTVDERTRRIAKEVEKLKKK EAKERKEMKNSKIASQKAVSVILRREATKAIIDKRRKKGPINSKKLLPRTVLEALHERVTALRWESALKVFELLREQLWY RPNSGVYIKLIVMLGKCKQPEKALELFQAMVDEGCVVDCESYTALLSAYSRSGLLERAFSLLEEMKSTPGCQPDVQTYSI LIKSCLEVFAFDKVQGLLSDMAIHGIKPNTVTYNTLIDAYGKAKRFSEMESTLVEMLADRDCQPDVWTMNSTLRAFGNLG QIDTMERCYDKFQTAGIQPNVQTFNILLDSYGKGHDYKKMSAVMEYMQKYHYSWTIVTYNIVIDAFGKAGDLQQMEYLFR LMRSERIKPSCVTLCSLVRAYARAGKPEKIGGVLRFVENSDVLLDTVFFNCLVDAYGRLGCLAEMKGVLEIMEQRCCKPD VVTYRTMIKAYSFKGMHTHVKELKELLTTVKRPPFKRNKPDF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 37 | 37 | - | – | |
| MobiDBLite | 1 | 59 | 59 | - | – | |
| PANTHER | 43 | 368 | 326 | 2.9E-73 | – | |
| Gene3D | 70 | 262 | 193 | 3.7E-43 | ||
| Coils | 71 | 94 | 24 | - | – | |
| ProSiteProfiles | 163 | 197 | 35 | 9.646 | ||
| TIGRFAM | 167 | 199 | 33 | 8.2E-6 | ||
| Pfam | 170 | 195 | 26 | 0.0019 | ||
| ProSiteProfiles | 198 | 228 | 31 | 10.358 | ||
| TIGRFAM | 201 | 235 | 35 | 8.7E-8 | ||
| Pfam | 201 | 245 | 45 | 1.6E-13 | ||
| ProSiteProfiles | 234 | 268 | 35 | 9.109 | ||
| Gene3D | 263 | 333 | 71 | 2.0E-16 | ||
| Pfam | 268 | 316 | 49 | 8.1E-10 | ||
| ProSiteProfiles | 269 | 304 | 36 | 10.753 | ||
| TIGRFAM | 271 | 306 | 36 | 7.9E-9 | ||
| ProSiteProfiles | 305 | 339 | 35 | 9.197 | ||
| Pfam | 330 | 388 | 59 | 2.7E-10 | ||
| Gene3D | 334 | 401 | 68 | 4.5E-14 | ||
| PANTHER | 335 | 502 | 168 | 2.9E-73 | – | |
| ProSiteProfiles | 340 | 374 | 35 | 7.98 | ||
| TIGRFAM | 343 | 373 | 31 | 6.1E-4 | ||
| ProSiteProfiles | 375 | 409 | 35 | 11.63 | ||
| TIGRFAM | 377 | 411 | 35 | 4.4E-10 | ||
| Gene3D | 402 | 512 | 111 | 8.1E-23 | ||
| ProSiteProfiles | 410 | 444 | 35 | 7.103 | ||
| Pfam | 412 | 430 | 19 | 0.85 | ||
| ProSiteProfiles | 445 | 479 | 35 | 9.887 | ||
| Pfam | 445 | 491 | 47 | 2.8E-8 | ||
| TIGRFAM | 449 | 481 | 33 | 2.9E-5 | ||
| ProSiteProfiles | 480 | 514 | 35 | 7.618 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0587700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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