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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0598500 |
| Transcript ID | LotjaGi1g1v0598500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT5G43820.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|P0C8R0|PP416_ARATH Putative pentatricopeptide repeat-containing protein At5g43820; TrEMBL-Plants: tr|V7CK83|V7CK83_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0598500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:113930388..113933375) extracted from Lotus japonicus Gifu genome v1.2.
ATAAACGTTCCATTGAGAACATTCACTTTGGAGCATCTCAATTTTCTTACCTCCATGGTAGGAGTACTCTGCCCCGCACC ACTTCATCCATGGCATTTCGATCATTCCAATTTCTCGTGCGCTTTGCAAAACCCAGTTACCCTTTCTCCTCCACACTCGC TTCCATTCCCTTTTCCCCATTCTCATCTCTTCACGCTCCCCCAAATTCTTCACACCACGGAAACCTCATCCACAACCAAA CAACCACCCATTCCAACCTCGACGAACGCTTCATCCTCGACCAAATCTCGGAGCTTCTACCAATACCCAGTTCCAAATCA CAGATACCCATTTCCAAAAACCGCGAATCACAACCAGAATCAGCACCAGAAGCCAAAACCGTTGATGGGTTTTTGTCTCC GGAAGAGAAACTCCGAGGAGTTTTCCTCCAGAAGCTGAATGGCAAGGCTGCGATTGAACGAGCTTTATCCAACGTGGGTG TTGATGTTGATCTCGATATTCTTGGTAAGGTGCTGAACTCTGGAAATCTCGGTGGTGAAGCCATGGTTACGTTTTTCAAC TGGGCAGTTAAACACCCAGCGTTGCCTGAAGACATTGGTAGCTACCGTGTGATTGTGAAGGCACTAGGAAGAAGAAATTT TTTCAGTTTCATGATGGGTGTGTTGCGTGACATGAGGGTGAATGGCGTAGAAGCTGATTTGTTGATGTTATCTATTGTTG TTGATAGTTTTGTGAGGGCTGGTCATGTGTCTAAGGCGATTCAGGTGTTTGGGAACTTGAATGAACTTGGGATGAATCGT GACACAGAGGCTTTGAATGTGCTTTTGAAGTGCCTTTGTGAACGGTCTCATGTGGGTGCTGCGGGTTCTGTTTTCAATTC AATGAAAGGGAAGGTAGCTTTTAATGTTGCTACATACAATGCTGTTGCGGGTGGTTGGTCTAAGTTTGGTAGAGTCAATG AGATTGAGAGGGTTATGAAGGAAATGGAAGCTGATGGGGTTGCTCCTGATTGCACCACGTTTGGCGTATTTCTTGAGGGT TTGGGCAGAGCTGGTAGAATGGATGAGGCTTTTGAGGTGTTTTGTTCTATGAAGGAGAGAAATTGCCAGCCAGACACTGC TGTCTATAATGCAATGATTTTCAATTTCATATCGGTTAACGATTTTGATGAGTGTATGAAGTATTATAATGAGATGTTGA GTAATGACTGTGAACCTAATCTTGATACGTATACTAGAATAGTCACTGCTTTGCTAAGAAGAAGAAAAGTGGCAGATGCG CTTCAAATGTTTGATGAAATGTTAAGGCATGGAGTTTTGCCTCCTACAGGGACTATAACCTGCTTCATCAAGCATTTGTG CAGCTATGGTCCACCGTTTGCTGCTTTGGTGATTTACAAGAAGGCGAGGAGATCGGGTTGTACGATATCGATGGAAGCTT ATAAGATACTGCTCATGCGTCTTTCGAAGTTGGGAAAGTGTGGGACATTGTTAAATATCTGGGAGGAGATGCAAGAGGGT GGGTATAGTTCAGATGTTGAGGTTTATGAGTACATCATCAGTGGCCTTTGCAACATAGGACAGCTGGAAAATGCTGTTCT TGTTATGGAGGAGGCTTTGCACAAAGGGTTCTGCCCAAGCAGGCTTGTATATAGTAAGCTGATTAACAAGCTGCTTGATT CAAACAACGCAGAGAGGGCTTACAAGCTGTTTTTGAAGATTAAACATGCCCGTTCTCTTGAGAATGCGAGAAATTATTGG CGTTCCAATGGTTGGCACTTTTGAACAGGCATGCTAATCAGCAGCTCCAGCGATAGAGCCTCTTGCTTGATTGTCACAAA GCTGTTCTTTAGCTACTTCCTTGAAAATATGACAGAACTAGTATGTACTTTTGATTTTTAACAACATATTGCCTTAAATG ATTTACCGTTCACTTGCTAGATTTGTGGTTACCGTTCATTATTCCTCTATATGGGTATATTCTCACAAGATTTGGGTTTC TAGGAATTTTAGATTTGAATATAGCTCTTGTGTTTAGGGTGAAGAAGAAGAAGTTGTCCTAGTAATTTTTTAGGCATAGC TTCCTCACTTATTAATTGTATATGGAAGGTATCAGGAAACAAGAGTAAGAGAGTAAATCAAAGAGACAAAGAAGATGAAA AGGGAAGAATTGTATTGGATGACTTACCTACATCATGTAATACAATAAATCAGATATATACACTCATGTAAAGTATTTAC AATGTTGGTAACTGTATCATAATTGATTAACAACAAACAACTAGAGTAGCTTAAACTGACTTCAAACTGAATAACCAATC TTATAACTAACTTCTTATGCTGTCAGTTTACTTTGTGTAATTGATAACTTTCTTCTATTTGCAGTATGAAAATCGTTCTT AGGAAGTGGAAGCATCACAAACTTATTGTAAAGGGCCCTTCCTTCTCAAAGGTAGTATGTTTTCTTTAATCCAATACTTG CTATTTTTTCAAGTAACATCCGGTTTTCCAAGTCAGATCTATCTTAATCTATTTCTTTCATACCAAACTCAGCTATAAGA AGCCTGGAGAAACCAAAATGAGATCCTTTTGTGGATCTGGAAGGAGACATCAATTTTCAGGTATTTGTTTTGAAGAGGTC GGTTGAAAGATATTCTGCATTAGAGGGAAGCCCTTGTTTTTTGTATTATGTAAGTAAAGTTCTGCCATGTTCTTCCTAAT GACTGCTAATATAGTATTGAATAGTTTGGTGTAAGATAGCCCCCACAATTGTTCTGTAGTGCATTATTTCAAAAACAAAA GTGCCATGCTTTCTGCATGCGTGTAATTTATATTAAATAGTATTCTCAGGAAGTATGAATACATTATTGTAGTTTTACTT TTATAGCTGCACTGAACTATATAATCATGTCACGTATTATGCATGGGAAATTGCAAATTTGTAATTATATGTGATCCTTG AGAAAATTTCACATCATAAGCTTTTCTA
CDS sequence (LotjaGi1g1v0598500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATTTCGATCATTCCAATTTCTCGTGCGCTTTGCAAAACCCAGTTACCCTTTCTCCTCCACACTCGCTTCCATTCC CTTTTCCCCATTCTCATCTCTTCACGCTCCCCCAAATTCTTCACACCACGGAAACCTCATCCACAACCAAACAACCACCC ATTCCAACCTCGACGAACGCTTCATCCTCGACCAAATCTCGGAGCTTCTACCAATACCCAGTTCCAAATCACAGATACCC ATTTCCAAAAACCGCGAATCACAACCAGAATCAGCACCAGAAGCCAAAACCGTTGATGGGTTTTTGTCTCCGGAAGAGAA ACTCCGAGGAGTTTTCCTCCAGAAGCTGAATGGCAAGGCTGCGATTGAACGAGCTTTATCCAACGTGGGTGTTGATGTTG ATCTCGATATTCTTGGTAAGGTGCTGAACTCTGGAAATCTCGGTGGTGAAGCCATGGTTACGTTTTTCAACTGGGCAGTT AAACACCCAGCGTTGCCTGAAGACATTGGTAGCTACCGTGTGATTGTGAAGGCACTAGGAAGAAGAAATTTTTTCAGTTT CATGATGGGTGTGTTGCGTGACATGAGGGTGAATGGCGTAGAAGCTGATTTGTTGATGTTATCTATTGTTGTTGATAGTT TTGTGAGGGCTGGTCATGTGTCTAAGGCGATTCAGGTGTTTGGGAACTTGAATGAACTTGGGATGAATCGTGACACAGAG GCTTTGAATGTGCTTTTGAAGTGCCTTTGTGAACGGTCTCATGTGGGTGCTGCGGGTTCTGTTTTCAATTCAATGAAAGG GAAGGTAGCTTTTAATGTTGCTACATACAATGCTGTTGCGGGTGGTTGGTCTAAGTTTGGTAGAGTCAATGAGATTGAGA GGGTTATGAAGGAAATGGAAGCTGATGGGGTTGCTCCTGATTGCACCACGTTTGGCGTATTTCTTGAGGGTTTGGGCAGA GCTGGTAGAATGGATGAGGCTTTTGAGGTGTTTTGTTCTATGAAGGAGAGAAATTGCCAGCCAGACACTGCTGTCTATAA TGCAATGATTTTCAATTTCATATCGGTTAACGATTTTGATGAGTGTATGAAGTATTATAATGAGATGTTGAGTAATGACT GTGAACCTAATCTTGATACGTATACTAGAATAGTCACTGCTTTGCTAAGAAGAAGAAAAGTGGCAGATGCGCTTCAAATG TTTGATGAAATGTTAAGGCATGGAGTTTTGCCTCCTACAGGGACTATAACCTGCTTCATCAAGCATTTGTGCAGCTATGG TCCACCGTTTGCTGCTTTGGTGATTTACAAGAAGGCGAGGAGATCGGGTTGTACGATATCGATGGAAGCTTATAAGATAC TGCTCATGCGTCTTTCGAAGTTGGGAAAGTGTGGGACATTGTTAAATATCTGGGAGGAGATGCAAGAGGGTGGGTATAGT TCAGATGTTGAGGTTTATGAGTACATCATCAGTGGCCTTTGCAACATAGGACAGCTGGAAAATGCTGTTCTTGTTATGGA GGAGGCTTTGCACAAAGGGTTCTGCCCAAGCAGGCTTGTATATAGTAAGCTGATTAACAAGCTGCTTGATTCAAACAACG CAGAGAGGGCTTACAAGCTGTTTTTGAAGATTAAACATGCCCGTTCTCTTGAGAATGCGAGAAATTATTGGCGTTCCAAT GGTTGGCACTTTTGA
Protein sequence (LotjaGi1g1v0598500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFRSFQFLVRFAKPSYPFSSTLASIPFSPFSSLHAPPNSSHHGNLIHNQTTTHSNLDERFILDQISELLPIPSSKSQIP ISKNRESQPESAPEAKTVDGFLSPEEKLRGVFLQKLNGKAAIERALSNVGVDVDLDILGKVLNSGNLGGEAMVTFFNWAV KHPALPEDIGSYRVIVKALGRRNFFSFMMGVLRDMRVNGVEADLLMLSIVVDSFVRAGHVSKAIQVFGNLNELGMNRDTE ALNVLLKCLCERSHVGAAGSVFNSMKGKVAFNVATYNAVAGGWSKFGRVNEIERVMKEMEADGVAPDCTTFGVFLEGLGR AGRMDEAFEVFCSMKERNCQPDTAVYNAMIFNFISVNDFDECMKYYNEMLSNDCEPNLDTYTRIVTALLRRRKVADALQM FDEMLRHGVLPPTGTITCFIKHLCSYGPPFAALVIYKKARRSGCTISMEAYKILLMRLSKLGKCGTLLNIWEEMQEGGYS SDVEVYEYIISGLCNIGQLENAVLVMEEALHKGFCPSRLVYSKLINKLLDSNNAERAYKLFLKIKHARSLENARNYWRSN GWHF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 77 | 99 | 23 | - | – | |
| Gene3D | 135 | 257 | 123 | 6.4E-15 | ||
| PANTHER | 165 | 404 | 240 | 1.1E-67 | – | |
| ProSiteProfiles | 168 | 202 | 35 | 8.024 | ||
| ProSiteProfiles | 203 | 237 | 35 | 8.089 | ||
| Pfam | 208 | 234 | 27 | 0.64 | ||
| ProSiteProfiles | 238 | 268 | 31 | 7.355 | ||
| Gene3D | 263 | 336 | 74 | 3.3E-15 | ||
| ProSiteProfiles | 272 | 306 | 35 | 11.301 | ||
| TIGRFAM | 275 | 308 | 34 | 5.2E-5 | ||
| Pfam | 302 | 335 | 34 | 5.9E-8 | ||
| ProSiteProfiles | 307 | 341 | 35 | 12.31 | ||
| TIGRFAM | 310 | 343 | 34 | 2.0E-9 | ||
| Gene3D | 337 | 428 | 92 | 2.3E-22 | ||
| Pfam | 341 | 388 | 48 | 1.8E-9 | ||
| ProSiteProfiles | 342 | 376 | 35 | 10.468 | ||
| TIGRFAM | 345 | 377 | 33 | 2.7E-7 | ||
| ProSiteProfiles | 377 | 411 | 35 | 11.553 | ||
| TIGRFAM | 380 | 411 | 32 | 9.0E-6 | ||
| PANTHER | 397 | 546 | 150 | 1.1E-67 | – | |
| ProSiteProfiles | 412 | 446 | 35 | 6.16 | ||
| Gene3D | 429 | 563 | 135 | 5.4E-17 | ||
| ProSiteProfiles | 447 | 481 | 35 | 7.607 | ||
| ProSiteProfiles | 482 | 516 | 35 | 10.052 | ||
| TIGRFAM | 485 | 517 | 33 | 0.0027 | ||
| Pfam | 488 | 514 | 27 | 0.81 | ||
| ProSiteProfiles | 517 | 547 | 31 | 6.062 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0598500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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