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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0599500 |
| Transcript ID | LotjaGi1g1v0599500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT1G02060.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|O81908|PPR2_ARATH Pentatricopeptide repeat-containing protein At1g02060, chloroplastic; TrEMBL-Plants: tr|I1LU33|I1LU33_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0599500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:114149995..114153293) extracted from Lotus japonicus Gifu genome v1.2.
AGAACTTTAAATGTCTATGGGGTAGCAAGCCTCGTACATGTGCAAACTCAAATCCCAAGCAGTTCTTGTATTCACAATTG TCACATAAAAGAATGGTTTTTGGGAGTGAGGTCACTGCCTCAACATGCTTTCTGGGAGCTTCCGATCACCGCTGTCTGCA AATCAAATTTCCATTCCCGTCTTCATTTCTAGGTATCTGCACTTCTCTTCATCTTCTCATTCCTCTTCTTTTCCATTTTG CTGTGTTTTCTCACAACAGTTTTGAAAATTCAGGTGCTTTTGTTCTCACCACACAGAAACCAATGATGGGGTTGAAGAAC TCATCCAAAATGAAAAACCCAGATCAAGAAACACAAGCAAAACAGCTAAAACCATGGTAAATCTCATAAATTTCAAACCT TGGTCAAATGGGTTGCTCTCTTCATTCACCACTTCTCTCTCCAAAACCACTGTGCTTCAAACTCTTCGCCATATCAAGGT CCCAACAAAGGCCTTGCAGTTTTTCAAGTGGGCACAGGAGATGGGTTTCTCTCACAATGCTCAGTCCTACTTCATCATGT TACAAATTCTGGGTCGTGAGAGGAATCTCAATGTGGCTAGGAATTTCTTGTTTTCCATTGAGAAAAGGTCCAATGGGGAA GTTAAGCTTGAGGACAGGTTTTTCAATAGCTTAATTCGGAGTTATGGTGAAGCTGGGCTTTTCAATGAGTCTATGAAGCT TTTTCAGACAATGAAAACCATTGGTGTTTCACCATCTGTGGTTACATTCAATAGTATTTTGTCTATATTGCTTAGAAGGG GTAGGACAAATTTGGCGAAGCAGGTGTATGACGAAATGCTCAGCACGTACGGTGTTTCTCCAGACACATGTACATATAAT ATTTTGATCAGAGGGTTTTGCAAGAATTCCATGGTGGATGAAGGGTTTCATTTCTTCAAAGAAATGATGAGCTTTAATTG CGAACCGGATGTCATTACGTATAATACACTTGTTGATGGTTTGTGTAGGGCGGGGAATGTCAGAACTGCACATAATTTAG TGAATGGTATGAGCAAGAAATGTGAGGATTTGACTCCCAACATTGTTACTTATACAACTTTGATTCGAGGGTATTGTATG AAACAGGAATTAGATGTGGCCTTGGTTATTCTTGAAGAGATGACTCGTGGGGGCCTCAAGCCAAATATTGTTACCTATAA TACTCTAATAAAAGGGCTTTGTGAGGCGCGCAAGTTGGACAAGATAAAAGAAATTTTGGAACAAATGAAAGGTGATGGAG GATTTAGTCCAGATACTTGTACCTTCAATACACTGATTCATTCACATTGTAGTGCAGGAAACCTGGACGAAGCATTGAAG GTGTTTGAAAACATGAAAAATTTTCAGGTCACAGCTGATTCAGCCTCATACAGTATTCTAATACGGAATTTATGTCAGAG AGGGGACTATGATAAGGCAGAGAAGCTTTTTGATGAGTTGTTTGAGAAGGAAATCGTGTTGTGTAAGTTTGGCTCTCAGC CGCTTGCTGCCTCATACAAACCTATTTTTCAGTATTTGTGTGAACATGGGAAAACTAGGAAAGCCGAGAGGGTACTCAGA CAGATAATGAAAAGAGGCACACAAGATCCGCTATCCTACATGACAGTGATTATGGGGCACTGTAGAGAAGGTGCATATGA AAATGGATATGAGCTTTTGATATGGATGCTAAGAAGAGATTTTCTTCCTGATGTTGAGATATATGATTGTTTGATTGATG GTTTTCTTCAGAAGGATAAGCCTCTTCTTGCAATGGAGACACTTGAGAAAATGCTAAAGAGCTCCTATCTACCAAAAACA TCTACCTGGCATTCTATACTGGCGAGACTTTTGGAAAAGGGTTTTCCTCACGAGTCTGCCCGGGTTACTGTCATGATGCT GGACAGAAATATTAGACAAAATATAAACCTGTCAACTAAGAGTATAGAGCTACTTTTTGGCCATGGACATCGAGATAAAG CATTTGAGATTGTCGAGTTGCTTTATAAGAAAGGATTCTGTGTCAAGATAGAAGAAGTGGTTCAATTTCTTTGCAAGAGA GGAAAGCTACCGGAAGCCCGCAAACTGTTGCTTTTTAGTTTGAAAAATCATCACAATGTTGATATTGACTTGTGTAATGC AGTTATTCTGGGCCTTTGTGAAATTAACAGGGTTTTAGAAGCTTTTGGTTTATGCTATGAATTGGTGGAGAAAGGTTTAC ATCAGGAATTGACATGCCTAAATGATTTGGTTACTGCCCTAGAGGCAAGGGGAAAAGTAGAGGAAGCTGCATTTATATCA AAGAGAATACCAGGACTAGAGAACTTGGACAGATCTGTGCTAAGCTATAGCTCTAAAAAATCGAGGCCTAATAAAGCGTG AGTCATGTTCACTGCTTTCTGAGTCTGCTGTTGTCATCTTCTCCATTTTGATTATTGACAGTTAAAATAATAAGTTTATA CAGATAGTAGTTGATTTTTATTTCAACAAGTAACTGTGTTAATTTAGAGGCCGATTTTCAGCGCAATGGTAAGGTTTCTG CCATGTGACTTTGCGGTCACAGGTTCGAGCCGTTGCACCAGCCTCTTGCAAAAAATGCAAGGTAAGGCTGCCTACATTAT ATCCACAAAGTGGATCCGGCCCCTTCCTAGACCTCGCACATAGCTGGAGCTTTATAGCACTAGGTTTTCCCTTTAAGTAA TGTGTAACTTCATGTGTATACTAAAATCATTGGATACATTCAACAGATAAGGAAGTTAGAATGGCATGAAAGTAGGCCGG GGTCTATTATCTGCTGAAAACAGGGTCTGAGTAAATGCTGATTGGGGAAGCTCTTGTTCAAGAGTAGACAAGCTTTGTCA AAATGGGCGACTGAATTTGGGTTATTCGCTAAATCTACAGCTTCCTTAGGCTATCATCAAAGGCTAATATTGGTAATAAA TTTGGACCATTTCCTATATAACATTTGTATATTTTTCCTGTGTATACAAGTCTTATCTTTTTATACTCTTGCTTGTTGCT AATATTAAAATTTCGTTTCATTGCATAAATATGTTTCATCTTTCTTTTCATTTTGAATTTTTTTCTTCTGTGGTTAAAAT TATTCTAAACAGGCAAGGAATATAGGAAGGTGGCCTGTTATGCTAATTAATAATTGTTTGAATTGTGCTCATATTTCATC GATTACAGGTTTCAATTTTATCAACTTTCTAGCAACTAATTGCTATATCTACTATATGCCAAACATGTTAATTCTAGGTC AAATGTTTGAATAGTTAGA
CDS sequence (LotjaGi1g1v0599500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTTCTGGGAGCTTCCGATCACCGCTGTCTGCAAATCAAATTTCCATTCCCGTCTTCATTTCTAGGTGCTTTTGTTC TCACCACACAGAAACCAATGATGGGGTTGAAGAACTCATCCAAAATGAAAAACCCAGATCAAGAAACACAAGCAAAACAG CTAAAACCATGGTAAATCTCATAAATTTCAAACCTTGGTCAAATGGGTTGCTCTCTTCATTCACCACTTCTCTCTCCAAA ACCACTGTGCTTCAAACTCTTCGCCATATCAAGGTCCCAACAAAGGCCTTGCAGTTTTTCAAGTGGGCACAGGAGATGGG TTTCTCTCACAATGCTCAGTCCTACTTCATCATGTTACAAATTCTGGGTCGTGAGAGGAATCTCAATGTGGCTAGGAATT TCTTGTTTTCCATTGAGAAAAGGTCCAATGGGGAAGTTAAGCTTGAGGACAGGTTTTTCAATAGCTTAATTCGGAGTTAT GGTGAAGCTGGGCTTTTCAATGAGTCTATGAAGCTTTTTCAGACAATGAAAACCATTGGTGTTTCACCATCTGTGGTTAC ATTCAATAGTATTTTGTCTATATTGCTTAGAAGGGGTAGGACAAATTTGGCGAAGCAGGTGTATGACGAAATGCTCAGCA CGTACGGTGTTTCTCCAGACACATGTACATATAATATTTTGATCAGAGGGTTTTGCAAGAATTCCATGGTGGATGAAGGG TTTCATTTCTTCAAAGAAATGATGAGCTTTAATTGCGAACCGGATGTCATTACGTATAATACACTTGTTGATGGTTTGTG TAGGGCGGGGAATGTCAGAACTGCACATAATTTAGTGAATGGTATGAGCAAGAAATGTGAGGATTTGACTCCCAACATTG TTACTTATACAACTTTGATTCGAGGGTATTGTATGAAACAGGAATTAGATGTGGCCTTGGTTATTCTTGAAGAGATGACT CGTGGGGGCCTCAAGCCAAATATTGTTACCTATAATACTCTAATAAAAGGGCTTTGTGAGGCGCGCAAGTTGGACAAGAT AAAAGAAATTTTGGAACAAATGAAAGGTGATGGAGGATTTAGTCCAGATACTTGTACCTTCAATACACTGATTCATTCAC ATTGTAGTGCAGGAAACCTGGACGAAGCATTGAAGGTGTTTGAAAACATGAAAAATTTTCAGGTCACAGCTGATTCAGCC TCATACAGTATTCTAATACGGAATTTATGTCAGAGAGGGGACTATGATAAGGCAGAGAAGCTTTTTGATGAGTTGTTTGA GAAGGAAATCGTGTTGTGTAAGTTTGGCTCTCAGCCGCTTGCTGCCTCATACAAACCTATTTTTCAGTATTTGTGTGAAC ATGGGAAAACTAGGAAAGCCGAGAGGGTACTCAGACAGATAATGAAAAGAGGCACACAAGATCCGCTATCCTACATGACA GTGATTATGGGGCACTGTAGAGAAGGTGCATATGAAAATGGATATGAGCTTTTGATATGGATGCTAAGAAGAGATTTTCT TCCTGATGTTGAGATATATGATTGTTTGATTGATGGTTTTCTTCAGAAGGATAAGCCTCTTCTTGCAATGGAGACACTTG AGAAAATGCTAAAGAGCTCCTATCTACCAAAAACATCTACCTGGCATTCTATACTGGCGAGACTTTTGGAAAAGGGTTTT CCTCACGAGTCTGCCCGGGTTACTGTCATGATGCTGGACAGAAATATTAGACAAAATATAAACCTGTCAACTAAGAGTAT AGAGCTACTTTTTGGCCATGGACATCGAGATAAAGCATTTGAGATTGTCGAGTTGCTTTATAAGAAAGGATTCTGTGTCA AGATAGAAGAAGTGGTTCAATTTCTTTGCAAGAGAGGAAAGCTACCGGAAGCCCGCAAACTGTTGCTTTTTAGTTTGAAA AATCATCACAATGTTGATATTGACTTGTGTAATGCAGTTATTCTGGGCCTTTGTGAAATTAACAGGGTTTTAGAAGCTTT TGGTTTATGCTATGAATTGGTGGAGAAAGGTTTACATCAGGAATTGACATGCCTAAATGATTTGGTTACTGCCCTAGAGG CAAGGGGAAAAGTAGAGGAAGCTGCATTTATATCAAAGAGAATACCAGGACTAGAGAACTTGGACAGATCTGTGCTAAGC TATAGCTCTAAAAAATCGAGGCCTAATAAAGCGTGA
Protein sequence (LotjaGi1g1v0599500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSGSFRSPLSANQISIPVFISRCFCSHHTETNDGVEELIQNEKPRSRNTSKTAKTMVNLINFKPWSNGLLSSFTTSLSK TTVLQTLRHIKVPTKALQFFKWAQEMGFSHNAQSYFIMLQILGRERNLNVARNFLFSIEKRSNGEVKLEDRFFNSLIRSY GEAGLFNESMKLFQTMKTIGVSPSVVTFNSILSILLRRGRTNLAKQVYDEMLSTYGVSPDTCTYNILIRGFCKNSMVDEG FHFFKEMMSFNCEPDVITYNTLVDGLCRAGNVRTAHNLVNGMSKKCEDLTPNIVTYTTLIRGYCMKQELDVALVILEEMT RGGLKPNIVTYNTLIKGLCEARKLDKIKEILEQMKGDGGFSPDTCTFNTLIHSHCSAGNLDEALKVFENMKNFQVTADSA SYSILIRNLCQRGDYDKAEKLFDELFEKEIVLCKFGSQPLAASYKPIFQYLCEHGKTRKAERVLRQIMKRGTQDPLSYMT VIMGHCREGAYENGYELLIWMLRRDFLPDVEIYDCLIDGFLQKDKPLLAMETLEKMLKSSYLPKTSTWHSILARLLEKGF PHESARVTVMMLDRNIRQNINLSTKSIELLFGHGHRDKAFEIVELLYKKGFCVKIEEVVQFLCKRGKLPEARKLLLFSLK NHHNVDIDLCNAVILGLCEINRVLEAFGLCYELVEKGLHQELTCLNDLVTALEARGKVEEAAFISKRIPGLENLDRSVLS YSSKKSRPNKA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 63 | 392 | 330 | 8.6E-124 | – | |
| Gene3D | 68 | 194 | 127 | 6.0E-20 | ||
| ProSiteProfiles | 76 | 110 | 35 | 5.13 | ||
| ProSiteProfiles | 111 | 141 | 31 | 5.634 | ||
| ProSiteProfiles | 149 | 183 | 35 | 10.753 | ||
| Pfam | 151 | 194 | 44 | 1.2E-5 | ||
| TIGRFAM | 153 | 184 | 32 | 1.1E-4 | ||
| ProSiteProfiles | 184 | 219 | 36 | 9.46 | ||
| TIGRFAM | 186 | 221 | 36 | 1.3E-6 | ||
| Gene3D | 195 | 284 | 90 | 5.9E-28 | ||
| Pfam | 219 | 268 | 50 | 5.3E-18 | ||
| ProSiteProfiles | 220 | 254 | 35 | 13.318 | ||
| TIGRFAM | 222 | 256 | 35 | 4.5E-12 | ||
| ProSiteProfiles | 255 | 285 | 31 | 10.402 | ||
| TIGRFAM | 257 | 285 | 29 | 1.5E-6 | ||
| Gene3D | 285 | 356 | 72 | 2.5E-23 | ||
| Pfam | 291 | 339 | 49 | 1.9E-17 | ||
| ProSiteProfiles | 292 | 326 | 35 | 12.255 | ||
| TIGRFAM | 294 | 328 | 35 | 1.1E-7 | ||
| ProSiteProfiles | 327 | 361 | 35 | 11.203 | ||
| TIGRFAM | 329 | 364 | 36 | 1.8E-8 | ||
| Gene3D | 357 | 431 | 75 | 5.8E-21 | ||
| Pfam | 362 | 411 | 50 | 3.7E-15 | ||
| ProSiteProfiles | 363 | 397 | 35 | 11.915 | ||
| TIGRFAM | 365 | 393 | 29 | 3.7E-8 | ||
| PANTHER | 387 | 609 | 223 | 8.6E-124 | – | |
| ProSiteProfiles | 398 | 432 | 35 | 11.444 | ||
| TIGRFAM | 401 | 431 | 31 | 7.8E-7 | ||
| Gene3D | 432 | 566 | 135 | 4.4E-20 | ||
| ProSiteProfiles | 440 | 470 | 31 | 6.708 | ||
| ProSiteProfiles | 474 | 508 | 35 | 9.821 | ||
| Pfam | 477 | 503 | 27 | 0.84 | ||
| PANTHER | 505 | 708 | 204 | 8.6E-124 | – | |
| ProSiteProfiles | 509 | 543 | 35 | 9.383 | ||
| Pfam | 512 | 539 | 28 | 0.11 | ||
| ProSiteProfiles | 544 | 578 | 35 | 6.654 | ||
| ProSiteProfiles | 579 | 613 | 35 | 5.371 | ||
| Gene3D | 615 | 727 | 113 | 4.1E-8 | ||
| ProSiteProfiles | 646 | 680 | 35 | 7.98 | ||
| Pfam | 650 | 678 | 29 | 0.29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0599500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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