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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0610000 |
| Transcript ID | LotjaGi1g1v0610000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | High-affinity nitrate transporter 2.2; TAIR: AT5G14570.1 high affinity nitrate transporter 2.7; Swiss-Prot: sp|Q9LYK2|NRT27_ARATH High affinity nitrate transporter 2.7; TrEMBL-Plants: tr|V4THC3|V4THC3_9ROSI Uncharacterized protein; Found in the gene: LotjaGi1g1v0610000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:115430712..115433845) extracted from Lotus japonicus Gifu genome v1.2.
GAACCCCATCATTTATTTCCTTAAAACCATTGCTAAGCATTTAGCCTACGTGTGAGTAATTCACTCTCTCAATTCCTGCG AGAGGTACATTGAATCGTAAGCAAGAATTTCTCTCCATTGATTTAAGCACCTTAACTCCAACTTTCCCATTTGCATAGGA ACTTGTAATCAAGGATCAACATCCGCTTTCAGTGAAGCTCCACAGTGTGATAGGATCAACTCCAGCACCATGCAACATCA ACCTCACCGTGACTTCCCTACTAAACCCCCTTCTTCCACCGTCTCCCTTGACGCCGATGGGAAAACCACCGACTTCCGCC CATTCTCCGCCGCCAAGTCACCGCAAATGCGCACCTTCCATCTCTCATGGCTAAACCTCTTCTCCTGCTTCTTCGCCACC TTCTCCATACCCCCTCTCATCCCCGTCATCCGTGACGACCTCCACCTCACCGCCTCCGAAATCGGCGCCGCTGGCTCCGC CTCCTTCGCCGGCGCCATCGTCTCCCGCCTCCTCATGGGGCCCATCTGCGACCTCGTGGGCCCGCGCATCGCCTCCGGGA CCCTCTCACTCATCACCGCCCCGATCATCCTAGCAACCTCCCTCGCCTCCACCCCTCAATCCTTCATCATCATCCGATTC CTCGTCGGATTCTCCATCGCCACCTTCGTCTCCAACCAGTTCTGGACCAGCTCCATGTTCTCCCCCTCCTGCGTCGGCGC CGCTAACGCCGTCGCCGCCGGGTGGGCCAACATGGGCTCCGGCGTCACACAGCTCCTCATGCCCCTCCTCTACTCCCTCA TCATGTCCCTCTTCCACGTCCCTTCCTCCACCGCGTGGCGATTATCCTTCATCCTCCCGGCGATTTTCCAAGCCCTCACA GGTACTCTCCACATTTTATCACAGTTTGAAATTTGAATTTACAGAATCACTTCATTTCACAAACACAACTGAAAGAATAT TTCAAGAAAATTCTCAATTGAAATTTTTCAAAATGACTGGCTTCATCTGGAAGATTTGATCAATGTGTACTTATTGTGGA ACTTTGTTTGAATTAATTTTCAAATAACTTTTTTCATTTGGAAGATTCAATCATAAGTAACTTTTCATTTGGAAGATTCA ATCATAAGTGTTCATCGGATTTAATTTTCAGATGAGTGTAGCTCATGAGTAATTAAGTTAGTTGCATGATTTTTGAGAAC TGAATTTTCTGAATAGGTATCTTAGTGTTGGCGTTCGGGCATGATCCGGTGCCATCGCGTAACCGCAAAGTGGGGCCGAA GGAGAGCGTGTTCAGCGTGGTGATGGGCGGTTTAAGGGACTACAGAGGGTGGATTCTGGGCTTACTCTACGGATTTTGTT TCGGTGTAGAGATGACAACGGACAACATCATAGCGGGTTACTTCTACGACAGGTTTGGGGTGAACCTACAAACAGCGGGG ACCATCGCGGCGTGTTTCGGGATGGCGAATTTCTTCTCGCGGCCGACGGGAGGGTTGGTTTCCGACGCAATGGGGAAGAG GTTCGGTGTTCGAGGGAGATTGTGGGCTCTGTGGGTGGTGCAGACGGTGGCGGGTTTGCTGTGCGTTTTGCTGGGGCGAG TTAACTCGCTGTGGAGCTCGATCGTAGTGATGTGTTGTTTCTCAGTGTTTGTTCAAGCTGCTTCTGGCCTCACGTTTGGC GTGGTCCCTTTTGTTTCAAGCAGGTAATTAATGAATAATAATTAGCTTAATACAGTAATACTGTTGTTCTTAATTAATAT GCTCTTGATATTTTGTGCATCACTGGTTTCGTCTTGTTGTTGATGCGGTTGAGAGTCAGTGTCATTCATTCTTGACTTGT TAGTCACAAACAATTATGTCTTTAATTTCACTGGAAGTGTCGATGGGATGGCCTTTCATGAGCGCTGACGTTGCTCATGC AAGATTCTACTTGAAGGGCAATGAACCGTTGAGGGACTAGTTTTGGTTTATTCACAAAAAAAAGGTTTAATAAAAAGAAA TACATTTATCGAAAATAAAAGCAAAACTTCTAGAATTTCTCCATAGTACTCTTTATGCAAACTTAAGTTGACACACTTGA ATATAGGCTTCGAGTGTAACTCGCCTCAAATTCCTTTGCATCCCCTATGTCTGAAGGCACATTCGAACTAGTGGATTGAC ATAGTGGTTCAACACTTTATTTCTTAAATAAGTGGTTGAGAGTTTGATTCTCAACTCTTATAAATTGAAAAAACTCATTG ACCTTCATATCGCTCATGGGATGAAAAATTAGTTGCATTGATCATGAAACGAGAATTAGTTTCACAATTACTAGTAGTAA GAATAGTCTTATACTTTTTAGTCAGTTTAATTTGTTTTAGTGATCTAAATTGAGTTTTCACTCATTCAAATTTTTCTTGT GGATGAAATTGGATGATTTTCTTTACGTGAAATTGAATGTTAGAATGAACTTTTATTGTTACGAGAAATTGTAAATTGAA CTCCAGCAACTCAATTCTTCATTTTTTTCATGTGTCCTTATTTGCAGATCACTAGGGGTAATATCAGGAATGACAGGGAG TGGTGGGACGATTGGGGCTGTTGTCACTCAATTGCTCCTGTTTTCCGGGGACACCATGTCAAAGCAAACAAGCATATCCT TGATGGGACTGATGATGATAATTTGTACTCTTCCAGTAACCTTGATCTACTTCCCTCAAGGGGGAGGCATGTTTTGTGGT CCTACCTCAAATGATGATCCCCTCGAAGAAAATTATACCTTGCTGGAGTAGCATTAATGAACAACAGCATGTAATTCGTG CAACTCGATTGTAGTACTCAAGCTTATAAACCCGCTGTAAATGGAAAGTACCAACCTATACCCTGTATGGCAAAGTAAAG AAGTGATTATGATATACAATAGTCAATCAGTAATATTCTAGTAGTAATGAATAGAGAGATTCCTTTATGAGTTGTTGTAA AAGATGTCCGTTAGTACCAAATTTGAAAATAGTTCTTGATTGAGAAGAAATTTTGATTAAGTATGAAGGAATGAGAAAAA CATAAAGAAAAAAGTGATAGAAAGACCAAATGTGTTTTTCATACGAATGTTGGGTTATTTCGACCAAAATTTTAGAGATG TCTCTTGGACTATT
CDS sequence (LotjaGi1g1v0610000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAACATCAACCTCACCGTGACTTCCCTACTAAACCCCCTTCTTCCACCGTCTCCCTTGACGCCGATGGGAAAACCAC CGACTTCCGCCCATTCTCCGCCGCCAAGTCACCGCAAATGCGCACCTTCCATCTCTCATGGCTAAACCTCTTCTCCTGCT TCTTCGCCACCTTCTCCATACCCCCTCTCATCCCCGTCATCCGTGACGACCTCCACCTCACCGCCTCCGAAATCGGCGCC GCTGGCTCCGCCTCCTTCGCCGGCGCCATCGTCTCCCGCCTCCTCATGGGGCCCATCTGCGACCTCGTGGGCCCGCGCAT CGCCTCCGGGACCCTCTCACTCATCACCGCCCCGATCATCCTAGCAACCTCCCTCGCCTCCACCCCTCAATCCTTCATCA TCATCCGATTCCTCGTCGGATTCTCCATCGCCACCTTCGTCTCCAACCAGTTCTGGACCAGCTCCATGTTCTCCCCCTCC TGCGTCGGCGCCGCTAACGCCGTCGCCGCCGGGTGGGCCAACATGGGCTCCGGCGTCACACAGCTCCTCATGCCCCTCCT CTACTCCCTCATCATGTCCCTCTTCCACGTCCCTTCCTCCACCGCGTGGCGATTATCCTTCATCCTCCCGGCGATTTTCC AAGCCCTCACAGGTATCTTAGTGTTGGCGTTCGGGCATGATCCGGTGCCATCGCGTAACCGCAAAGTGGGGCCGAAGGAG AGCGTGTTCAGCGTGGTGATGGGCGGTTTAAGGGACTACAGAGGGTGGATTCTGGGCTTACTCTACGGATTTTGTTTCGG TGTAGAGATGACAACGGACAACATCATAGCGGGTTACTTCTACGACAGGTTTGGGGTGAACCTACAAACAGCGGGGACCA TCGCGGCGTGTTTCGGGATGGCGAATTTCTTCTCGCGGCCGACGGGAGGGTTGGTTTCCGACGCAATGGGGAAGAGGTTC GGTGTTCGAGGGAGATTGTGGGCTCTGTGGGTGGTGCAGACGGTGGCGGGTTTGCTGTGCGTTTTGCTGGGGCGAGTTAA CTCGCTGTGGAGCTCGATCGTAGTGATGTGTTGTTTCTCAGTGTTTGTTCAAGCTGCTTCTGGCCTCACGTTTGGCGTGG TCCCTTTTGTTTCAAGCAGATCACTAGGGGTAATATCAGGAATGACAGGGAGTGGTGGGACGATTGGGGCTGTTGTCACT CAATTGCTCCTGTTTTCCGGGGACACCATGTCAAAGCAAACAAGCATATCCTTGATGGGACTGATGATGATAATTTGTAC TCTTCCAGTAACCTTGATCTACTTCCCTCAAGGGGGAGGCATGTTTTGTGGTCCTACCTCAAATGATGATCCCCTCGAAG AAAATTATACCTTGCTGGAGTAG
Protein sequence (LotjaGi1g1v0610000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQHQPHRDFPTKPPSSTVSLDADGKTTDFRPFSAAKSPQMRTFHLSWLNLFSCFFATFSIPPLIPVIRDDLHLTASEIGA AGSASFAGAIVSRLLMGPICDLVGPRIASGTLSLITAPIILATSLASTPQSFIIIRFLVGFSIATFVSNQFWTSSMFSPS CVGAANAVAAGWANMGSGVTQLLMPLLYSLIMSLFHVPSSTAWRLSFILPAIFQALTGILVLAFGHDPVPSRNRKVGPKE SVFSVVMGGLRDYRGWILGLLYGFCFGVEMTTDNIIAGYFYDRFGVNLQTAGTIAACFGMANFFSRPTGGLVSDAMGKRF GVRGRLWALWVVQTVAGLLCVLLGRVNSLWSSIVVMCCFSVFVQAASGLTFGVVPFVSSRSLGVISGMTGSGGTIGAVVT QLLLFSGDTMSKQTSISLMGLMMIICTLPVTLIYFPQGGGMFCGPTSNDDPLEENYTLLE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 46 | 46 | - | – | |
| SUPERFAMILY | 3 | 434 | 432 | 4.32E-53 | ||
| MobiDBLite | 9 | 23 | 15 | - | – | |
| PANTHER | 14 | 451 | 438 | 3.5E-224 | – | |
| PANTHER | 14 | 451 | 438 | 3.5E-224 | – | |
| Gene3D | 30 | 436 | 407 | 9.5E-62 | – | |
| ProSiteProfiles | 42 | 438 | 397 | 15.206 | ||
| CDD | 43 | 432 | 390 | 4.69594E-103 | – | |
| TMHMM | 45 | 67 | 23 | - | – | |
| Pfam | 47 | 399 | 353 | 4.4E-26 | ||
| Phobius | 47 | 67 | 21 | - | – | |
| Phobius | 68 | 72 | 5 | - | – | |
| Phobius | 73 | 95 | 23 | - | – | |
| Phobius | 96 | 106 | 11 | - | – | |
| TMHMM | 103 | 125 | 23 | - | – | |
| Phobius | 107 | 127 | 21 | - | – | |
| Phobius | 128 | 132 | 5 | - | – | |
| TMHMM | 132 | 154 | 23 | - | – | |
| Phobius | 133 | 152 | 20 | - | – | |
| Phobius | 153 | 163 | 11 | - | – | |
| Phobius | 164 | 191 | 28 | - | – | |
| TMHMM | 169 | 191 | 23 | - | – | |
| Phobius | 192 | 202 | 11 | - | – | |
| Phobius | 203 | 225 | 23 | - | – | |
| TMHMM | 203 | 225 | 23 | - | – | |
| Phobius | 226 | 255 | 30 | - | – | |
| TMHMM | 255 | 277 | 23 | - | – | |
| Phobius | 256 | 280 | 25 | - | – | |
| Phobius | 281 | 285 | 5 | - | – | |
| TMHMM | 284 | 306 | 23 | - | – | |
| Phobius | 286 | 305 | 20 | - | – | |
| Phobius | 306 | 325 | 20 | - | – | |
| TMHMM | 326 | 343 | 18 | - | – | |
| Phobius | 326 | 344 | 19 | - | – | |
| Phobius | 345 | 349 | 5 | - | – | |
| TMHMM | 350 | 372 | 23 | - | – | |
| Phobius | 350 | 377 | 28 | - | – | |
| Phobius | 378 | 383 | 6 | - | – | |
| TMHMM | 382 | 404 | 23 | - | – | |
| Phobius | 384 | 404 | 21 | - | – | |
| Phobius | 405 | 415 | 11 | - | – | |
| TMHMM | 416 | 438 | 23 | - | – | |
| Phobius | 416 | 435 | 20 | - | – | |
| Phobius | 436 | 460 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0610000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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