Domain Predictions — View — Lotus Base

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PTHR23515

Source: PANTHER

Description

No description is available for this domain.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 16

Transcript	Name	Description	Predicted domains	Domain count
Lj1g3v3646440.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: high affinity nitrate transporter 2.7-like [Fragaria vesca subsp]. vesca] gi\|470141271\|ref\|XP_004306358.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:1.20.1250.20 IPR011701 IPR020846 NON_CYTOPLASMIC_DOMAIN PF07690 PS50850 PTHR23515 PTHR23515:SF5 SSF103473 TMhelix TRANSMEMBRANE cd06174 mobidb-lite	14
Lj3g3v3069010.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Membrane transporter [Lotus japonicus] gi\|13539545\|emb\|CAC35729.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:1.20.1250.20 IPR011701 IPR020846 NON_CYTOPLASMIC_DOMAIN PF07690 PS50850 PTHR23515 PTHR23515:SF3 SSF103473 TMhelix TRANSMEMBRANE cd06174	13
Lj3g3v3069020.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Membrane transporter [Lotus japonicus] gi\|13539545\|emb\|CAC35729.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:1.20.1250.20 IPR011701 IPR020846 NON_CYTOPLASMIC_DOMAIN PF07690 PS50850 PTHR23515 PTHR23515:SF3 SSF103473 TMhelix TRANSMEMBRANE cd06174	13
Lj3g3v3069030.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Membrane transporter [Lotus japonicus] gi\|13539545\|emb\|CAC35729.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:1.20.1250.20 IPR011701 IPR020846 NON_CYTOPLASMIC_DOMAIN PF07690 PS50850 PTHR23515 PTHR23515:SF3 SSF103473 TMhelix TRANSMEMBRANE cd06174 mobidb-lite	14
Lj3g3v3069040.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Membrane transporter [Lotus japonicus] gi\|13539545\|emb\|CAC35729.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:1.20.1250.20 IPR011701 IPR020846 NON_CYTOPLASMIC_DOMAIN PF07690 PS50850 PTHR23515 PTHR23515:SF3 SSF103473 TMhelix TRANSMEMBRANE cd06174	13
Lj3g3v3069050.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Membrane transporter [Lotus japonicus] gi\|13539545\|emb\|CAC35729.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:1.20.1250.20 IPR011701 IPR020846 NON_CYTOPLASMIC_DOMAIN PF07690 PS50850 PTHR23515 PTHR23515:SF3 SSF103473 TMhelix TRANSMEMBRANE cd06174 mobidb-lite	14
Lj4g3v1085060.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: high affinity nitrate transporter 2.5-like [Glycine max] gi\|356526779\|ref\|XP_003531994.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:1.20.1250.20 IPR011701 IPR020846 NON_CYTOPLASMIC_DOMAIN PF07690 PS50850 PTHR23515 PTHR23515:SF3 SSF103473 TMhelix TRANSMEMBRANE cd06174 mobidb-lite	14
LotjaGi1g1v0610000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	High-affinity nitrate transporter 2.2; TAIR: AT5G14570.1 high affinity nitrate transporter 2.7; Swiss-Prot: sp\|Q9LYK2\|NRT27_ARATH High affinity nitrate transporter 2.7; TrEMBL-Plants: tr\|V4THC3\|V4THC3_9ROSI Uncharacterized protein; Found in the gene: LotjaGi1g1v0610000	Domains CYTOPLASMIC_DOMAIN G3DSA:1.20.1250.20 IPR011701 IPR020846 IPR036259 NON_CYTOPLASMIC_DOMAIN PF07690 PS50850 PTHR23515 PTHR23515:SF10 SSF103473 TMhelix TRANSMEMBRANE cd17341 mobidb-lite	15
LotjaGi3g1v0487600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	High-affinity nitrate transporter 2.2; TAIR: AT5G60770.1 nitrate transporter 2.4; Swiss-Prot: sp\|Q9FJH8\|NRT24_ARATH High affinity nitrate transporter 2.4; TrEMBL-Plants: tr\|Q9ARC5\|Q9ARC5_LOTJA Membrane transporter; Found in the gene: LotjaGi3g1v0487600	Domains CYTOPLASMIC_DOMAIN G3DSA:1.20.1250.20 IPR011701 IPR020846 IPR036259 NON_CYTOPLASMIC_DOMAIN PF07690 PS50850 PTHR23515 PTHR23515:SF16 SSF103473 TMhelix TRANSMEMBRANE cd17341 mobidb-lite	15
LotjaGi3g1v0487700_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	High-affinity nitrate transporter 2.2; TAIR: AT1G08090.1 nitrate transporter 2:1; Swiss-Prot: sp\|O82811\|NRT21_ARATH High-affinity nitrate transporter 2.1; TrEMBL-Plants: tr\|Q9ARC5\|Q9ARC5_LOTJA Membrane transporter; Found in the gene: LotjaGi3g1v0487700_LC	Domains CYTOPLASMIC_DOMAIN G3DSA:1.20.1250.20 IPR011701 IPR020846 IPR036259 NON_CYTOPLASMIC_DOMAIN PF07690 PS50850 PTHR23515 PTHR23515:SF16 SSF103473 TMhelix TRANSMEMBRANE cd17341	14
LotjaGi3g1v0487700_LC.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	High-affinity nitrate transporter; TAIR: AT5G60770.1 nitrate transporter 2.4; Swiss-Prot: sp\|Q9FJH8\|NRT24_ARATH High affinity nitrate transporter 2.4; TrEMBL-Plants: tr\|Q9ARC5\|Q9ARC5_LOTJA Membrane transporter; Found in the gene: LotjaGi3g1v0487700_LC	Domains CYTOPLASMIC_DOMAIN G3DSA:1.20.1250.20 IPR036259 NON_CYTOPLASMIC_DOMAIN PTHR23515 PTHR23515:SF19 SSF103473 TMhelix TRANSMEMBRANE cd17341 mobidb-lite	11
LotjaGi3g1v0487700_LC.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	High-affinity nitrate transporter; TAIR: AT5G60770.1 nitrate transporter 2.4; Swiss-Prot: sp\|Q9FJH8\|NRT24_ARATH High affinity nitrate transporter 2.4; TrEMBL-Plants: tr\|Q9ARC5\|Q9ARC5_LOTJA Membrane transporter; Found in the gene: LotjaGi3g1v0487700_LC	Domains CYTOPLASMIC_DOMAIN G3DSA:1.20.1250.20 IPR036259 NON_CYTOPLASMIC_DOMAIN PTHR23515 PTHR23515:SF19 SSF103473 TMhelix TRANSMEMBRANE cd17341 mobidb-lite	11
LotjaGi3g1v0487700_LC.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	High-affinity nitrate transporter 2.2; TAIR: AT1G08090.1 nitrate transporter 2:1; Swiss-Prot: sp\|O82811\|NRT21_ARATH High-affinity nitrate transporter 2.1; TrEMBL-Plants: tr\|Q9ARC5\|Q9ARC5_LOTJA Membrane transporter; Found in the gene: LotjaGi3g1v0487700_LC	Domains CYTOPLASMIC_DOMAIN G3DSA:1.20.1250.20 IPR011701 IPR020846 IPR036259 NON_CYTOPLASMIC_DOMAIN PF07690 PS50850 PTHR23515 PTHR23515:SF16 SSF103473 TMhelix TRANSMEMBRANE cd17341	14
LotjaGi3g1v0487700_LC.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	High-affinity nitrate transporter 2.2; TAIR: AT1G08090.1 nitrate transporter 2:1; Swiss-Prot: sp\|O82811\|NRT21_ARATH High-affinity nitrate transporter 2.1; TrEMBL-Plants: tr\|Q9ARC5\|Q9ARC5_LOTJA Membrane transporter; Found in the gene: LotjaGi3g1v0487700_LC	Domains CYTOPLASMIC_DOMAIN G3DSA:1.20.1250.20 IPR011701 IPR020846 IPR036259 NON_CYTOPLASMIC_DOMAIN PF07690 PS50850 PTHR23515 PTHR23515:SF16 SSF103473 TMhelix TRANSMEMBRANE cd17341	14
LotjaGi3g1v0487700_LC.6 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	High-affinity nitrate transporter 2.2; TAIR: AT1G08090.1 nitrate transporter 2:1; Swiss-Prot: sp\|O82811\|NRT21_ARATH High-affinity nitrate transporter 2.1; TrEMBL-Plants: tr\|Q9ARC5\|Q9ARC5_LOTJA Membrane transporter; Found in the gene: LotjaGi3g1v0487700_LC	Domains CYTOPLASMIC_DOMAIN G3DSA:1.20.1250.20 IPR011701 IPR020846 IPR036259 NON_CYTOPLASMIC_DOMAIN PF07690 PS50850 PTHR23515 PTHR23515:SF16 SSF103473 TMhelix TRANSMEMBRANE cd17341	14
LotjaGi4g1v0155900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	High-affinity nitrate transporter 2.2; TAIR: AT1G12940.1 nitrate transporter2.5; Swiss-Prot: sp\|Q9LPV5\|NRT25_ARATH High affinity nitrate transporter 2.5; TrEMBL-Plants: tr\|I1KXC5\|I1KXC5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0155900	Domains CYTOPLASMIC_DOMAIN G3DSA:1.20.1250.20 IPR011701 IPR020846 IPR036259 NON_CYTOPLASMIC_DOMAIN PF07690 PS50850 PTHR23515 PTHR23515:SF3 SSF103473 TMhelix TRANSMEMBRANE cd17341 mobidb-lite	15

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	6.25