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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0616800 |
| Transcript ID | LotjaGi1g1v0616800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT3G46610.1 Pentatricopeptide repeat (PPR-like) superfamily protein; Swiss-Prot: sp|Q9SNB7|PP264_ARATH Pentatricopeptide repeat-containing protein At3g46610; TrEMBL-Plants: tr|A0A0R0FZ41|A0A0R0FZ41_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0616800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:116342581..116345871) extracted from Lotus japonicus Gifu genome v1.2.
CAAGTGTTTATTATTTTTAATTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATATTTGTTGTG TTTATTATCCATTCGATTATTTGCAAACCAATGACTGCGTGGAAGCAAACTCGCCACTAGTCCCCTTTGTTCGACTCATT CCTGCGAGCCTCCGAAGGTAAGAAACCCTTCCGTGTTTGCTCCCTCAATCATTCACATGATCAACTTCATCTCCTTGTTC TAGTTGTCATTTCTTCTTTGTTCATCAATTTCTCACTATGATTCACACTATAAGCACTTTACCCTCCCAAGGTCCTGTTC CTATTGGCTTTGTTCTAAATAGGAGAAGAAGGCTGAAACTGGGTATTGTTTTCTCTATTCCTCGCTGTACTAGTTTTAGT GTTTTTCCATGTTCAAGAAATTCAGGTGCTTATGGTACTGTAATCATTTCTGGGCACCCAAAATTTGATTTCAGAAGTGG GTTTTTGTTTGGTTACTCTGAACTCAAATTTGATACCCTTTTGAAGCCAATCAAGAGTCAGGTAGGAGATTTGGCTCCAC CATTGGGGTGGGGTTTGGAGGAGGAAGCTATGGGGAGTGAATTGGTTGAGGAACATGCTAGTTCTGATGAACATTTACCA GTTAATGGTGAGTCAGAATCAGAAGGTGTAAACTCTTCCAATAGTGAGGGAAATGGCGCAGAAGAGTGTCGCTGTAAGGT TGATGTTCGAGCGGTTTCCATGAGCTTGCAGGCTGCTAAGACTTTGGAGGATGTGGAGGAGATTCTTAAGGATAAGGGGG AGTTCCCCCTTCAGGTGTATTCAACCATGATTAGATGGTTTGGTAAAGAAAAGAGAATGGATACGGCGTTGATTCTTTTT GATTGGATGAAGAAGAGGAAGGTAGAAAGTAATGGTGATTTCGGTCCTAACCTTTTCATATATAATGGTTTGTTAGGTGT AGTTAAGCAAACTGGAAAGTTTGAGGAAATAGATGCCATTCTGTGTGAGATGGAGCAAGATGAAATCACCTATAATGTTG TGACCTATAACACCTTGATGGCAATTTACATTGAGAAAGGTGAATGTGACAAAGCTCTCAATATGCTTGAGGAGATCCAG AGAAACGGCGTTACTCCATCCCCGGTATCCTATTCTGAAGCCCTGTTGGCATATCGGAGAATGCAAGATGGCTATGGAGC TCTGCGTTTCTTTGTTGAGTTTAGAGAAAAATATCGTCGAGGTGAAATAGGTAGGGATGGTGACGGGGAAGATTGGGAGA AAGAACTCTCAAAGCTTGAGAAGTTTACAATCCGTATTTGCTATCAGAAAATGCGCGGTTGGCTTGTCAGTAGTGAGAAC TTGAGCAACAATGTGTTAAAGTTTCTTGTTGATATGGACAATGCTCGTGTTCCACTGCCACGGGATGAACTTGAACGACT TGCATGGGCTTGTACCCGTGAAGACCACTACAATGTTATAAAAGAGCTGTACGTCCGGATCAGAGTACGGTATGATAAGA TCAGCTTGTCTGTCTGCAACCATGTCATTTGGTTGATGGGGAAAACCAAGAAGTGGTGGGCAGCTTTGGAAATATATGAA GATTTATTAGACAAAGGGCCGAAGCCGAACAACTTGTCATATGAACTGATGATGTCTCACTTCAACTTTCTGCTCAGTGC AGCCCAGAAAAAAGGCACTTGGAGATGGGGTATCAGGTTGTTAAACAAGATGGAAGAGAAAGGCCTAAAACCTGGAAGTA GGGAATGGAATGCAGTTCTTGTCGCCTGTTCAAAAGCTTCGGAAACTACAGCAGCTGTGCAAATATTTAAGAGAATGGTG GAAAATGGTGAAAAGCCTACTGTAATTTCATATGGGGCTTTATTGAGTGCTCTTGAAAAGGGAAAACTCTATGAAGAAGC CCTCCGCGTGTGGGATCATATGATCAAGGTTGGGATTGAACCAAATGCCTATGCCTACACAATTATGGCTTCAATTTATA CTGCACAAGGAAATTTCAGTAGAGTTGATGCCATCGTCAGGGAGATGGTTGCAGTAGGAATTGAGGTAACTGTTGTGACA TACAATGCGATAATTAGTGGTTCTGCACGGAATGGTATGAGCAGCGCAGCGTATGAATGGTTTCACCGTATGAAAGTTCA GGACATCGCTCCCAATGAGATTACTTACGGAATGCTGATTGAGGCCCTTGCAAAAGATGGAAAACCAAGGCTGGCATATG AGTTATATTTGAGAGCCCAGAAGGAAGGACTTGAACTTTCTTCAAAAGCTTATGATGCAGTTGTGCAATCCGCTCAGGCT TATGGCGCCACCATCGATTTCGGTGTTTTGGGGCCTCGTCCTGCAGATAAAAAGAAGAATGTGCAGATTAGAAAAACATT CACTGAATTCTGCAACTTGGCTGATGTTCCCAGGAGAAGTAAACCATTTGATAGAAGAGAAATTTATCACTCACAGACAC GACAAAGAACATAAGTAATTAAATAGATTGAAACTAGCATAGTCAAATATTTTATAACCTCTGTACATTCTGGTACTTTG CTGTAGCTTGAGCCTTTTGTATCCTTAGCTTGAGAAGGTACACGAATCACACTCATGTTTTTCTTTCACTTCTGTTAGGA TAATAGAGATCTCAACACTTTCTGCGGAACTATTTTAAAAATTATAGTTCAAATTCTGCTCAAATATTTGAAAAGAAAGA GAAATTTGTTCCTTTTAAGAAGTTTTACCCAATAGGGTTTAAAAATTAAAAGTGATGTCAAAGTTAAATATTCCCTAGAA AGACATGTCTTGTAGAAGTTAATAGTTGTATTCTGCACTCTTTTAATTTTCTGAGTTTCTTATAGAATTAAACTTAACAT TTACATAATCTTCTATGCCAGTTTATGTAAGTATTGTTTTTGGCATCATGTTATCCTTTGCCAGTTTTCCCAATTGGCCC AATTACGGAAATATTTGTTTTATTTTTTAAACAAAATCCCAATATCATTCATTGATATAGTCAGCTATAGCAGCTTGAAG AACATGTGGGAGGGGCATTCCCCAGCCACTGGAATCTGGAAAAGTAAATGTCATTTTGCCCTACAAATGAGCAACAGTGT TTTGTTATCCTTTGCCAGGAAAGATTTGTTAGTAAAGTTATCTTTTCCAGTTTTTTATGCTCGGAAGTCTAGCAAACTTC TCATTTGTATGTATTGTTTGATGCTAGTAACACTCTTCAACACACTTCATGTTGGTTTATTTTTGAAAAGTTAACGCATT TTTTCAATAAG
CDS sequence (LotjaGi1g1v0616800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTCACACTATAAGCACTTTACCCTCCCAAGGTCCTGTTCCTATTGGCTTTGTTCTAAATAGGAGAAGAAGGCTGAA ACTGGGTATTGTTTTCTCTATTCCTCGCTGTACTAGTTTTAGTGTTTTTCCATGTTCAAGAAATTCAGGTGCTTATGGTA CTGTAATCATTTCTGGGCACCCAAAATTTGATTTCAGAAGTGGGTTTTTGTTTGGTTACTCTGAACTCAAATTTGATACC CTTTTGAAGCCAATCAAGAGTCAGGTAGGAGATTTGGCTCCACCATTGGGGTGGGGTTTGGAGGAGGAAGCTATGGGGAG TGAATTGGTTGAGGAACATGCTAGTTCTGATGAACATTTACCAGTTAATGGTGAGTCAGAATCAGAAGGTGTAAACTCTT CCAATAGTGAGGGAAATGGCGCAGAAGAGTGTCGCTGTAAGGTTGATGTTCGAGCGGTTTCCATGAGCTTGCAGGCTGCT AAGACTTTGGAGGATGTGGAGGAGATTCTTAAGGATAAGGGGGAGTTCCCCCTTCAGGTGTATTCAACCATGATTAGATG GTTTGGTAAAGAAAAGAGAATGGATACGGCGTTGATTCTTTTTGATTGGATGAAGAAGAGGAAGGTAGAAAGTAATGGTG ATTTCGGTCCTAACCTTTTCATATATAATGGTTTGTTAGGTGTAGTTAAGCAAACTGGAAAGTTTGAGGAAATAGATGCC ATTCTGTGTGAGATGGAGCAAGATGAAATCACCTATAATGTTGTGACCTATAACACCTTGATGGCAATTTACATTGAGAA AGGTGAATGTGACAAAGCTCTCAATATGCTTGAGGAGATCCAGAGAAACGGCGTTACTCCATCCCCGGTATCCTATTCTG AAGCCCTGTTGGCATATCGGAGAATGCAAGATGGCTATGGAGCTCTGCGTTTCTTTGTTGAGTTTAGAGAAAAATATCGT CGAGGTGAAATAGGTAGGGATGGTGACGGGGAAGATTGGGAGAAAGAACTCTCAAAGCTTGAGAAGTTTACAATCCGTAT TTGCTATCAGAAAATGCGCGGTTGGCTTGTCAGTAGTGAGAACTTGAGCAACAATGTGTTAAAGTTTCTTGTTGATATGG ACAATGCTCGTGTTCCACTGCCACGGGATGAACTTGAACGACTTGCATGGGCTTGTACCCGTGAAGACCACTACAATGTT ATAAAAGAGCTGTACGTCCGGATCAGAGTACGGTATGATAAGATCAGCTTGTCTGTCTGCAACCATGTCATTTGGTTGAT GGGGAAAACCAAGAAGTGGTGGGCAGCTTTGGAAATATATGAAGATTTATTAGACAAAGGGCCGAAGCCGAACAACTTGT CATATGAACTGATGATGTCTCACTTCAACTTTCTGCTCAGTGCAGCCCAGAAAAAAGGCACTTGGAGATGGGGTATCAGG TTGTTAAACAAGATGGAAGAGAAAGGCCTAAAACCTGGAAGTAGGGAATGGAATGCAGTTCTTGTCGCCTGTTCAAAAGC TTCGGAAACTACAGCAGCTGTGCAAATATTTAAGAGAATGGTGGAAAATGGTGAAAAGCCTACTGTAATTTCATATGGGG CTTTATTGAGTGCTCTTGAAAAGGGAAAACTCTATGAAGAAGCCCTCCGCGTGTGGGATCATATGATCAAGGTTGGGATT GAACCAAATGCCTATGCCTACACAATTATGGCTTCAATTTATACTGCACAAGGAAATTTCAGTAGAGTTGATGCCATCGT CAGGGAGATGGTTGCAGTAGGAATTGAGGTAACTGTTGTGACATACAATGCGATAATTAGTGGTTCTGCACGGAATGGTA TGAGCAGCGCAGCGTATGAATGGTTTCACCGTATGAAAGTTCAGGACATCGCTCCCAATGAGATTACTTACGGAATGCTG ATTGAGGCCCTTGCAAAAGATGGAAAACCAAGGCTGGCATATGAGTTATATTTGAGAGCCCAGAAGGAAGGACTTGAACT TTCTTCAAAAGCTTATGATGCAGTTGTGCAATCCGCTCAGGCTTATGGCGCCACCATCGATTTCGGTGTTTTGGGGCCTC GTCCTGCAGATAAAAAGAAGAATGTGCAGATTAGAAAAACATTCACTGAATTCTGCAACTTGGCTGATGTTCCCAGGAGA AGTAAACCATTTGATAGAAGAGAAATTTATCACTCACAGACACGACAAAGAACATAA
Protein sequence (LotjaGi1g1v0616800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIHTISTLPSQGPVPIGFVLNRRRRLKLGIVFSIPRCTSFSVFPCSRNSGAYGTVIISGHPKFDFRSGFLFGYSELKFDT LLKPIKSQVGDLAPPLGWGLEEEAMGSELVEEHASSDEHLPVNGESESEGVNSSNSEGNGAEECRCKVDVRAVSMSLQAA KTLEDVEEILKDKGEFPLQVYSTMIRWFGKEKRMDTALILFDWMKKRKVESNGDFGPNLFIYNGLLGVVKQTGKFEEIDA ILCEMEQDEITYNVVTYNTLMAIYIEKGECDKALNMLEEIQRNGVTPSPVSYSEALLAYRRMQDGYGALRFFVEFREKYR RGEIGRDGDGEDWEKELSKLEKFTIRICYQKMRGWLVSSENLSNNVLKFLVDMDNARVPLPRDELERLAWACTREDHYNV IKELYVRIRVRYDKISLSVCNHVIWLMGKTKKWWAALEIYEDLLDKGPKPNNLSYELMMSHFNFLLSAAQKKGTWRWGIR LLNKMEEKGLKPGSREWNAVLVACSKASETTAAVQIFKRMVENGEKPTVISYGALLSALEKGKLYEEALRVWDHMIKVGI EPNAYAYTIMASIYTAQGNFSRVDAIVREMVAVGIEVTVVTYNAIISGSARNGMSSAAYEWFHRMKVQDIAPNEITYGML IEALAKDGKPRLAYELYLRAQKEGLELSSKAYDAVVQSAQAYGATIDFGVLGPRPADKKKNVQIRKTFTEFCNLADVPRR SKPFDRREIYHSQTRQRT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 110 | 124 | 15 | - | – | |
| MobiDBLite | 110 | 141 | 32 | - | – | |
| MobiDBLite | 126 | 140 | 15 | - | – | |
| Gene3D | 150 | 356 | 207 | 5.7E-26 | ||
| PANTHER | 161 | 316 | 156 | 4.3E-70 | – | |
| ProSiteProfiles | 177 | 211 | 35 | 9.186 | ||
| TIGRFAM | 180 | 211 | 32 | 0.0014 | ||
| Pfam | 180 | 208 | 29 | 0.01 | ||
| ProSiteProfiles | 218 | 252 | 35 | 7.388 | ||
| Pfam | 253 | 293 | 41 | 1.1E-10 | ||
| ProSiteProfiles | 253 | 287 | 35 | 12.134 | ||
| SUPERFAMILY | 254 | 594 | 341 | 1.63E-6 | ||
| TIGRFAM | 255 | 288 | 34 | 3.1E-6 | ||
| ProSiteProfiles | 288 | 318 | 31 | 5.382 | ||
| Gene3D | 363 | 505 | 143 | 2.2E-13 | ||
| ProSiteProfiles | 416 | 450 | 35 | 8.046 | ||
| ProSiteProfiles | 458 | 492 | 35 | 8.572 | ||
| PANTHER | 462 | 677 | 216 | 4.3E-70 | – | |
| ProSiteProfiles | 493 | 527 | 35 | 9.745 | ||
| Pfam | 497 | 524 | 28 | 0.008 | ||
| TIGRFAM | 497 | 528 | 32 | 1.4E-5 | ||
| Gene3D | 506 | 687 | 182 | 9.9E-44 | ||
| Pfam | 527 | 570 | 44 | 1.1E-9 | ||
| ProSiteProfiles | 528 | 562 | 35 | 11.06 | ||
| TIGRFAM | 530 | 564 | 35 | 1.9E-6 | ||
| ProSiteProfiles | 563 | 597 | 35 | 8.528 | ||
| ProSiteProfiles | 598 | 632 | 35 | 10.918 | ||
| Pfam | 598 | 646 | 49 | 1.8E-13 | ||
| TIGRFAM | 600 | 634 | 35 | 3.1E-7 | ||
| ProSiteProfiles | 633 | 667 | 35 | 10.095 | ||
| TIGRFAM | 635 | 668 | 34 | 4.9E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0616800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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