Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0617400 |
| Transcript ID | LotjaGi1g1v0617400.1 |
| Related isoforms 10 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cystinosin like; TAIR: AT5G40670.1 PQ-loop repeat family protein / transmembrane family protein; Swiss-Prot: sp|P57758|CTNS_ARATH Cystinosin homolog; TrEMBL-Plants: tr|I3T3G0|I3T3G0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0617400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:116401504..116410069) extracted from Lotus japonicus Gifu genome v1.2.
GTTACAACCTGGTAACTAATCACACTCCATTTTCTTTTGAACAGAGGCTATATATATTGGTATTGGTAATAGAGGTTCAA GAATCACATTTACGTGTGGGACAAAACTTCGACACTAGAAGAAAATATTGGGGGTCCACAACTCAATATACATTGAATTT GTTGGTTAATTTCTTCTACTTGAAAGTGAGGGAAAAAATCTGAGAAAGAAGCTATGTCATCATCTTGGAATTCAGAACCA CTCCATGTTTCCTATGAAGCTCTGGGATGGTTTGCTTTTGTTTGCTGGTCCATCAGTTTCTACCCACAAGTCATCTTGAA CTTTCGAAGGAAAAGGTACCAGCCCAAAAAGCAATATTTTATATTATCATCATGTGATTTTCTCTACAAATTAATTAATC TTATAAATTATCTTGCTTTTCTTTTAGGCTTTCTTTTTATTTGGTTTTCTTTTGTGTTATAGTGTGGTGGGGCTGAACTT TGATTTCATAGTGCTGAATCTGACCAAGCACACAGCCTATCTCATATACAATGCATCTTTGTACTTCAGCTCTACCATTC AGAAACAGTATAGAGAAAAATACGGAGAGAAAGAGGTTTGTTCTTGTTATTAGTACTGATATGTCTGTTTTCCTTTTGGA AGCTAAATTGATGACTCAATTTCCTCTCTGTTTTAGATTAAAAATTGCTGATAATGTTAATGGACAATGTTGAACAAGGC ACAATTTAGTATTAATGATATCAATTTAGTTACTCTTTGTATGAGTGGAAGCAAAAGTGCAAAACTAAACATTCATGTCG AGAAGTCTCATATTGACTAGAGATATGATACGGCCAAAATAGTTCTTATAAAGGATGTATTAACCCTCCATCTCAATCAA GTTTTGGGGTAGCGTTAGGCCTAACCCAAATTGTAATAGTGAGTCTAGCTTCTAAACGTTCAGAATTGATTCGGAACCTC TAATTGTCGATCTAAACACTGGTAGTTAAATGTTAGCAGAGATCTAACTTCTTTTCTTTATTGATTATTTCAGATGATAC CTGTGGCAGCAAATGATGTTGCTTTCTCAATCCATGCTGTTCTTTTGACAGCAATTTCCTTGTTCCAGATTGCAATCTAT GATGTTAGTGCTGTGTTCCTTTTCATTGAGTTTTTATACAATGTTCTTTGGATTAATGTATGATATTCATCATGAAAGTG GATATATTTTCGGATTGTGCAGCGTGGAAGTCAGAAAATCTCTAAAGTTGCTTATGGGATCCTCCTTGTTGCGTGGTCGA CCGCTGCAGTGTGTTTCTTTATAGCCTTGCACAACCATCATTGGCTCTGGCTGCTCTCAATCTTCACGTATGTTGTGTGT TTTCATTTGTTACAAGTTAACTTCCTGTTGTGTATGATGGTATTTTAGAATTTCTTTCTGACTTGTGTTGAAACTAATCA ACTTGCAGTGCTATCCAAATCTCTATGACGGTTATCAAATATATTCCACAGGTTAGGATCAATTCAAATTTGTATAAATT CCTTTTTAATTTCTGTATCCCTATGTTTCTATTGATGCCTGTAATGTTCAATTTGATTGCTGAGATTTTTATTAACTGTT TGAACTAAGTAGCCTATAAAAATGTGCTAGTGCTATCATCAATGAACCTTTCTTTGAAATGCATGTGCATAATCTGAAGA AGAGCTACTTACTGACTTTTCTTTGATGTAGTGCTTGTTTTGATACACGATGGGAAACCATAGTGAAACCAAAATCACGA AGGACATAAGCAACTTCACTTAGCTTTCGCGGCTGTCCACCATGATTTTGGTCTCATCGTGGTTCTCACCTTGTATTCAG ACATGCACATAACAATAGAGGATTGTTTTATGTTTCCTTGGTCAAAAGTGGACAAAATTTCTTTTCCCTAAAGTTATGTT ACTCATCCATCTTAACACATTGTGTTGTGAATGTAGGCAGTGATGAACTTCATGAGAAAAAGCACAGATGGATGGAGCAT TGGCAACATTCTACTAGACTTTTCAGGAGGGTTAGGAAACTATTTACAAATGGCAGTGCAATCAATAGATCAAGGTCTGT CACTGTCATAGACATTACTAGGCAATCTTCTTGTCTGAGTTTAAAGATTGAACTGACATAATTTTGAAATTTTCATCTTT GATTTTCAGGTTCTTGGGTGAACTTCTATGGAAACATTGGAAAACTACTCATATCCCTGGTACGAATCATACTTCAATTT TTCTATATCAATCAGTACTCACCTTCTTTTAAGTTTTTATTCTGATCCACTATTTTTCCTTCCTTTTATTAGAGAATAAA ATGAATTTCTTGGATAAAAATGCTACATGCCTAGTTGCCTACAATTCAAGTTTATAAACAGGGTCTTGGATTGAAAATCA AATGTTTAAGCTCATATAACATTGCTAACTGATGGAATAAATCAACCATTGCAGGTATCTGTATTCTTTGACATCCTCTT CATGATCCAACACTATCTGCTATATCCTGCTTCAAAACGCAAATCAAAGACATCTCCTGACCTTGATAATCCCAAGTCTT CAAATAGGCAACTGTCTGATAATGTTTAGGATGTAACTTTTTTTTAATACTTCAAGGAATGAAATTTTCTAGCTATTTGC AAATTATCCTATTGGGAGAAAAATAGATAGAATATATATATATCTTATTAATTAATCTGTGAAGTAGGCATATCCCGATT AGCTTTTCTCCAGTTATTAGATGAACAGATTAAAGGTTTCCCATGAGAAGAACATTTAAGTCATTTAAAATGTAAACTTG TTACTCCAATTTTAAACCAGTTTTAAGCAATAAGGCTGTCACGCGATCACGCCCATTGCCTGTGACTACCATGAACGACA GCTTTTGAAGATTAATTTGGGGAATGAATGTCTTGGTTTTGTGTTTATTGGATATTAGTGCTTATTGGTTCTATGTTCAC GCTTGAAGATTCAATACTATTAGCCTTTGCCCTTTGGTGAAACTTGCAGAAATCATATCCAATGTCACATAGAGGATTAA GAAATGGGGCGCTAAAAGAAAATGGCTAGAGTCATTAACAAGGGAAGAAGGTCACGTGACTCACTAATCTGAACATATTA CATCCTAGATTAAATGAGATCAATGGTGGAAAATTAGTGTAAGAGTGTAAGATTTATAAGAGTGTAAATTTAGCCCTGCT CTTGAAACTTATGTCAGTTTCATTAAATTGTCAGTCCTTTTTTATCCAGTAAATTACATGGATCTTACTCCTAATTTCAT GAGAGCAAAATATATATTTTCACAGCACATTTATCTTTCACGGGAGCCAATCGGTATGAATCATTACTTAAGAAAAATCA AATATGGATCGTTTTAATCAACCACGTGTTAGTATAATATTCTAAGTAGTTTTGAACTGAAAAGACCAAGATTAATTTGT TTTCAAAACATAAATCTAAATAATATTTAATTTTCAAAAAAATATTAAATTAAAAATAGGGTTAATCTTCAAATTAGTCA TTGTATTTGTGTCGCCGTCTAAAGTAGATCTCTCGTCGGAAAAGTTATTGAAAATGATCGCACTTGTTATAAATTGTTTG GGGCAAGTCATCGTCGGAATCCGGAGCTCCGACGAGAGATGATTTGGCTAGCCGACATGGAATGAAAAAAATTAAAATAT TTTACATGTCAGTTTTATTAATGTAATTAACAAAATTAAACCCTAATTAACTAACTAACCCTAATCTAATTAACAAAATA AGTTTCCCCCCAAATTGTCTCCAAAATCCCCCTAGAATTAACTCAAATTCCAAATCAGAACACCCTCAAATTTGAACCCT AATCGTTTTCCATCTTCAATCATCTTTCCTGAACCTCCATCGACATCATCTTCACCCCCAATTTTCATCATCTCATTAAT TATTATCTTATTGGGGTCTAACCCGCCTCTCTTTGAGGATTAATTTTACATATAATGTACATAATGTAGGATAAGAGATA AAGTTATACGCTACAAGCACAACAAATAAGATATTATTATTCTGTTATCTTACTTTATCTTTTTATTCTATGCATCAAAG AACCCAAAATTAAAACAATAAGTAGTTGTTATTTTCCCTTTATGGGTTCAACTGTATATATGACACATACCATCTCTAGC AGGTAGAGGAGTGTGGTATATAGAGAACAAGAAATTTTCATTTTAAAACTATTTTATCTAAATTATTTATTAATGAATTT ATTTTATTGTTAATTTTAGTTCTTAATATTTGTCATTAAAGTCAATTTTTAAGTTTATAATTTTTTTTATTTAATGTTTG GTAGTTTTTTTTACGGTCTAATTAATGTAGGTAGTTAAATAGTTTTTTTTCTCGTTACAATACAATTTTTCCATGTTTTT AATTTTATTATTTAATATATTTATTACAAACCAATTTTTTTTCTTAATGTATTTTGATAGAAAGGTAAAGAATTGTTATT ACTTAATGTATTTAATTCAAAAATTCAAGATTTTACATATATATATTTTGATGATACGTAAAATTTAAAGTTAACTGGGG CAGCAGTAGTAATTGATAAGAAAAAAGTTATTCCTTTTGAGTTAAAAAAATATTCATTTTTTATGAATTAGTCGTTTTTT ATTAAATTTATGAATAAATAAATAATTTTAACTTAGTAGCATTAATATATTATAATAATTAGTATTTTTATATTTATAAA TTAGTATATTATTAATTATAAAAATCTATATATTGGAATAATTTTAATTTGGGATGAAGTTAAAAAGGGAATAGAAAATT GCTATTTTATCTTATTAGATTCTAACCACGCCTCTCCATGATGATTTTTTTTTGACGGAAAATTATCGGAAGAATATCCA AGAGGATACATGATTGAATACATGGAGGAACACATTGAAACCAAGACTCATCTCCATGATCCAGAGAATATTTTGCAGCA CATCAGCTGATTTATTTGCTTGTCTAAAAACATGCACAAAGGAAACAAAACTAAAACTAGAAACTAATAACTTTTTAAAA TTCAGCTGCTACAAGCCCCAATTACGTGTTACTGGACTTTGCCATTGGTTTGCTCTTTGATGACCAATTTACTATCTGAT TCAACCATTACCTTGCTAAAACCATGTTGCATTGCCAACCGTAGTCCTTCCAATACTCCCATAAGCTCGGCAACAACCAC TCCATGATGATTAATTTTACATATAATGGATATAATATGATAATATCTTTTTTTTAAAAAAAAAAATAAGAGATAAGATT ACATTATTATATCTACTAGCACAATAAAATAAAATAAAAATATGTGTGCACAACAAATAAAGATATGATTGTGTTATCTT ACCATATCTTTATATCCCCATAAAACAAATCCTAAAATTAAAACAATAAGTAGTTGGTTCTTTTCCCTTTTTCGGTTGAA CTGTGTACGTATAACATCTCTAGCAGGTTGAGGAGTGTGGTATAGAGAACGAGAAATTAGGTAAATTCACAATAGGGTTT GTACTTTGTATCTCCGTCCGTGAATGCATATTGAATGCATATTCAACAATAGGTTTGTACTTTGGAAATTAAACACCGTT CTTTAATGAGCACAGCCTAATTATAGATCATACAAATGTTCCGATTTTAGGAGTAACACATGAATAGTAAACTCAAACAT GCTCCTTGGTCACAAATCCTGTCTCCATACACTCTCAGATTCATAATCCTAGAAAAAATGGTTTTCTTTAAATTTAACGC CGATCCACGTTTGAATCAACGTGACACAAAATTAGATTGCTGTGTTGGAATGTGTTACAACCTGGTAACTAATCACACTC CATTTTCTTTTGAACAGAGGCTATATATATTGGTATTGGTAATAGAGGTTCAAGAATCACATTTACGTGTGGGACACAAC TGTGACACTAAAAGAGAATATTGGGGGTCCACAACTCAATATACATTGAATTTGTTGGTTAATTTCTTCTCCTTGAAAGT GAGGGAAAAAATCTGAGAAAGAAGCTATGTCATCATCTTGGAATTCAGAACCACTCCATGTTTCCTATGAAGCTCTGGGC TGGTTTGCTTTTGTTTGCTGGTCCATCAGTTTCTACCCACAAGTCATCTTGAACTTTCGAAGGAAAAGGTACCAACTCAA AAAGCAATATTTTATATTATCATCATGTGATTTTCTCTACAAATTAATTAATCTTATAAATTATCTTGCTTTTCTTTTAG GCTTTCTTTTTATTTGGTTTTCTTTTGTGTTATAGTGTGGTGGGGCTGAACTTTGATTTCATACTGCTGAATCTGACCAA GCACACAGCCTATCTCATATACAATGCATCTTTGTACTTCAGCTCTACCATTCAGAAACAGTATAGAGAAAAATACGGAG AGAAAGAGGTTTGTTCTTGTTATTAGTACTGATATGTCTGTTTTCCTTTTGGAAGCTAAATTGATGACTCAATTTCCTCT CTGTTTTAGATTAAAAATTGCTGATAATGTTAATGGACAATGTTGAACAAGCTAGGCACAATTTAGTATTAATGATATCA ATTTAGTTACTCTTTGTATGAGTGGAAGCAAAAGTGCAAAACTAAACATTCATGTCGAGAAGTCTCATATTGACTAGGGA TATGGTACGGCCAAAATAGTTCTTATAAAAGATGTATTGACCCTCCATCTCAATCAAGTTTTGGGGTAGCGTTAGGCCAA ACCCAAATTGTAATAGTGAGTCTAGCTTCTAAACGTTCAGAATTGATTCGGAACCTCTAGGTGTCGATCTAAACACTGGT AGTTAAATGTTAGCAGAGATCTAACTTCTTTTCTTTATTGATTATTTCAGATGATACCTGTGGCAGCAAATGATGTTGCT TTCTCAATCCATGCTGTTCTTTTGACAGCAATTTCCTTGTTCCAGATTGCAATCTATGATGTTAGTGCTGTGTTCCTTTT CATTGAGTTTTTATACAATGTTCTTTGGATTAATGTATGATATTCATCATGAAAGTGGTTATATTTTCGGATTGTGCAGC GTGGAAGTCAGAAAATCTCTAAAATCGCTTATGGGATCCTCCTTGTTGCGTGGTCGATCGCTGCAGTGTGTTTCTTTATA GCCTTGCACAACCACCATTGGCTCTGGCTGCTCTCAATCTTCACGTATGTTGTCTGTTTTCATTTGTTAGTTAACTTCCT GTTGTGTATGATGGTATTTTAGAATTTCTTTCTGACTTGTGTTGAAACTAATCAACTTGCAGTGCTATCCAAATCTCTAT GACGGTTATCAAATATATTCCACAGGTTAGGATCAATTCAAATTTGTATAAATTCCTTTTTAATTTCTGTATCCCTATGT TTCTATTGATGCATCTAATATTCAATTTAATTGCTGAGATTTTTATGAACTGTTTGAACTAGGTAGCCTATAAGAATGTG CTACTGTAAACATCAAAGAATCATATTTTGAAATGCTTGTGCATAATCTGAAGAAGAACTACTAACTGATTTTGCTTTGA CGTAGTGTGTGTTTAGATACACGGTGAAAAATCACAATGAAGTTAAAATCATGTTGAACAGAACATAGAAGTAACTTCTC TTAGCTTTTGCGACTGTCCACCATGATTTTGGCCTCAATGTTGTTTTCACCGTGTATCCAGCACTTAATAATTGAGGATT TTTTTGTGTTTCCTTGGTCAAAAAGTGAATGAAATTTCTTTTCCCTAAAGTTATGTTACTCATCCATCTTAACACATTGT GTTGGGAAAATATTATAGGCAGTGATGAACTTCATGAGAAAAAGCACAGATGGATGGAGCATTGGAAACATTCTACTAGA CTTTTCAGGAGGGTTAGGAAACTATTTACAAATGGCAATGCAATCAATAGATCAAGGTCTGTCACTGTCATATACATTAG TAAGCAATCTTCTGAGTTTAAAGTTTGAACTGATGACATGATTTTGAAATTCTATCTTTGATTTTCAGGCTCTTGGATGA ACTTCTACGGAAACATTGGAAAACTACTCATATCCCTGGTATAGATAATACTTTTTCTCTGTTAATCTCCACTCACCTTC TTCAAAATTGTATTCAGAGCCCACAATTTTTCATTCCTTTTGTTAGAGAAAATGAATTTTTTGTATAAAAATACAACAAG CCTACAATTCAAGTTTATCAAATGTTTAAGCTCATATAGCTAATTTGCTAATTAACCATTGCAGGTATCTGTATTTTTTG ACATCCTCTTCATGATCCAACACTATCTGCTATATCCTGCTTCAAAACGCAAATCAGAGACATCTCCTGACCTAGATAAT CCCAAGTCTTCCAATAGACAATTGTCTGATAATGTCTAGGTTGTAACTTGTTTTACAATATTTCAAGGAATGAACTATTT CTAGCTATTTGCAATTTTTCCTATTGGGAGAAAATTAGATAGAATATATATCCAACCCTTAAGTTGTAAATGCTATTATA GTCCATTTACATTGAAGCAGCATCAAAGTCTTTAAAATATATTTTTTTAGTACGTATATTCTCCACGTAAGACAATTCAA TATGAG
CDS sequence (LotjaGi1g1v0617400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCATCATCTTGGAATTCAGAACCACTCCATGTTTCCTATGAAGCTCTGGGCTGGTTTGCTTTTGTTTGCTGGTCCAT CAGTTTCTACCCACAAGTCATCTTGAACTTTCGAAGGAAAAGTGTGGTGGGGCTGAACTTTGATTTCATACTGCTGAATC TGACCAAGCACACAGCCTATCTCATATACAATGCATCTTTGTACTTCAGCTCTACCATTCAGAAACAGTATAGAGAAAAA TACGGAGAGAAAGAGATGATACCTGTGGCAGCAAATGATGTTGCTTTCTCAATCCATGCTGTTCTTTTGACAGCAATTTC CTTGTTCCAGATTGCAATCTATGATCGTGGAAGTCAGAAAATCTCTAAAATCGCTTATGGGATCCTCCTTGTTGCGTGGT CGATCGCTGCAGTGTGTTTCTTTATAGCCTTGCACAACCACCATTGGCTCTGGCTGCTCTCAATCTTCACTGCTATCCAA ATCTCTATGACGGTTATCAAATATATTCCACAGGCAGTGATGAACTTCATGAGAAAAAGCACAGATGGATGGAGCATTGG AAACATTCTACTAGACTTTTCAGGAGGGTTAGGAAACTATTTACAAATGGCAATGCAATCAATAGATCAAGGCTCTTGGA TGAACTTCTACGGAAACATTGGAAAACTACTCATATCCCTGGTATCTGTATTTTTTGACATCCTCTTCATGATCCAACAC TATCTGCTATATCCTGCTTCAAAACGCAAATCAGAGACATCTCCTGACCTAGATAATCCCAAGTCTTCCAATAGACAATT GTCTGATAATGTCTAG
Protein sequence (LotjaGi1g1v0617400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSSWNSEPLHVSYEALGWFAFVCWSISFYPQVILNFRRKSVVGLNFDFILLNLTKHTAYLIYNASLYFSSTIQKQYREK YGEKEMIPVAANDVAFSIHAVLLTAISLFQIAIYDRGSQKISKIAYGILLVAWSIAAVCFFIALHNHHWLWLLSIFTAIQ ISMTVIKYIPQAVMNFMRKSTDGWSIGNILLDFSGGLGNYLQMAMQSIDQGSWMNFYGNIGKLLISLVSVFFDILFMIQH YLLYPASKRKSETSPDLDNPKSSNRQLSDNV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 15 | 15 | - | – | |
| PANTHER | 3 | 259 | 257 | 1.2E-142 | – | |
| PANTHER | 3 | 259 | 257 | 1.2E-142 | ||
| TIGRFAM | 13 | 244 | 232 | 2.1E-70 | ||
| TMHMM | 15 | 37 | 23 | - | – | |
| Pfam | 15 | 70 | 56 | 1.2E-19 | ||
| Phobius | 16 | 37 | 22 | - | – | |
| SMART | 27 | 58 | 32 | 1.7E-7 | ||
| Phobius | 38 | 48 | 11 | - | – | |
| Phobius | 49 | 69 | 21 | - | – | |
| TMHMM | 50 | 72 | 23 | - | – | |
| Phobius | 70 | 88 | 19 | - | – | |
| TMHMM | 87 | 109 | 23 | - | – | |
| Phobius | 89 | 112 | 24 | - | – | |
| Phobius | 113 | 123 | 11 | - | – | |
| TMHMM | 122 | 144 | 23 | - | – | |
| Phobius | 124 | 143 | 20 | - | – | |
| Phobius | 144 | 148 | 5 | - | – | |
| TMHMM | 148 | 170 | 23 | - | – | |
| Phobius | 149 | 169 | 21 | - | – | |
| Pfam | 153 | 208 | 56 | 7.2E-14 | ||
| SMART | 166 | 197 | 32 | 4.9E-8 | ||
| Phobius | 170 | 180 | 11 | - | – | |
| Phobius | 181 | 203 | 23 | - | – | |
| TMHMM | 183 | 205 | 23 | - | – | |
| Phobius | 204 | 222 | 19 | - | – | |
| TMHMM | 220 | 242 | 23 | - | – | |
| Phobius | 223 | 244 | 22 | - | – | |
| Phobius | 245 | 271 | 27 | - | – | |
| MobiDBLite | 250 | 271 | 22 | - | – | |
| MobiDBLite | 257 | 271 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0617400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…