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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0617400 |
| Transcript ID | LotjaGi1g1v0617400.11 |
| Related isoforms 10 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cystinosin like; TAIR: AT5G40670.1 PQ-loop repeat family protein / transmembrane family protein; Swiss-Prot: sp|P57758|CTNS_ARATH Cystinosin homolog; TrEMBL-Plants: tr|I3T3G0|I3T3G0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0617400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:116415414..116418165) extracted from Lotus japonicus Gifu genome v1.2.
TTTTTTTCTTTAAATTTAACTCCGATACACATTTGAGTCAACGTGACACAAAACTAGATTGATGTGTTGGAATGTGTTAC AACCTGGTAACTAATCTAATCAGACACTCCATTTTCTTTTGAACAGAGGCTATATATATTGGTATTGGTAATAGAGGTTC AAGAATCACATTTACGTGTGGGACAAAACTGTGACACTAGAAGAAAATATTGGGGGTCCACAACTCAATATACATTGAAT TTGTTGGTTAATTTCTTCTTCTTGACTGTGACTGTGAGGAAAAAAATCTGAGAAAGAAGCTATGTCATCATCTTGGAATT CAGAACCACTCCATGTTTCCTATGAAGCTCTGGGCTGGTTTGCTTTTGTTTGCTGGTCCATCAGTTTCTACCCACAAGTC ATCTTAAACTTTCGAAGGAAAAGGTACCAACCCAAAAAGCAATATTTTATATTATCATCATGTGATTCTCTCTACAAATT AATTAATTTCTAAATGATCTTGCTTTTTGTTTTTTGGTTATAGTGTGGTGGGGCTGAACTTTGATTTCATAGTGCTGAAT CTGACCAAGCACACAGCCTATCTCATATACAATGCATCTTTGTACTTCAGCCCTGCCATTCAGAAACAGTACAGAGAGAA ATATGGAGAGAAACAGGTTTGTTACGTTCTTGTTATTAGTACTGCTTTCCTATTAGAAGCTAAATTGATGACTCAATTTC CTCTCTGTTTTAGATTAAAAATTGCTGATAATGTTAATGGTCCATGTTGAACAAGGCACAATTTAGTATTAATGATATCA ATTGATTTTTAAAAAATTCGCTTCTTTTTACCCCTCATTGAATCACCATGTGATGTGATATATCTGCATTTCAGAAGATT TTAGTGGGTTTTTTTTTGGCTTAATAGTGAATTTCCACGTTAAAACTCCAAAACATGTTGAAGTAGATTTTGGGTGCAGA GTTGATTTTGGATTTTAGTTAATTTGAAGAGGTTACTCATTGTACGAGTGGAAGCAAAACTAAACATGCATGTTGAGAAG TCCCGCATCAATTAGAGATGTAGCCAAAATAGTTGTTATAAAGGATAGACCAACACTCTATTCCAATAGTTAAATGTTAG CAGAGTCTAACTTTAATTCTATATTGATTATTTCAGATGATACCTGTGGCGGCTAATGATGTTGCTTTCTCAATCCATGC CGTTCTTTTGACAGCAATTTCCCTGTTCCAGATTGCAATCTATGATGTTAGTGTTGTATTCCTTTTCATTGAGTTTTAAA ATTTTCTTTGGAGGAATTTATGATACTCATCATGACAATGGTTATATTTTCGACCGTGCAGCGTGGAAGTCAGAAAATCT CAAAAATCGCTTATGGGATCCTCCTTGTTGCGTGGTCGGTCGCTGCAGTGTGTTTCTTTATAGCCTTGCACAACCATCAT TGGCTCTGGCTGCTCTCAATCTTCACGTATGTTGTCTGTTTTCATTTGTTAGTTAACTTTCCTGTTATGTATGATGGTAT TTTAGAATTTCTTTCTGACTTGTGTTGAAACTAATCAACTTGCAGTGCAATCCAAATCTCTATGACGGTTATCAAATATA TTCCCCAGGTTAGGATCAATTCAAATTTGTATAAATTCCTTATAATTTCTGTATCCCCTATGTTTTTATTAATGCCTGTA ATTCAGTTTGATTTCTGAGATATTATTTAACTGTTTTGTGAATTTTGAGATGCTTGTGCATAATCTGAATGGACTATTTT CCGAAGAATCAAAAAAATAATCTGAATGGACTTGAGGATTGTTTTCTATGTTTTCCTGGTCATAAAGTGAATGAAATTTC TTTTCCCTAAAGTTATGTTACTCATCTATCTTAACTCGTGTTGTTGAAAATATTATAGGCAGTGATGAACTTCATGAGAA AAAGCACAGATGGATGGAGCATTGGCAACATTCTACTAGACTTTTCAGGAGGATTAGGAAACTATTTACAAATGGCAATG CTATCAATAGATCAAGGTGTGTCACTATGATATACATTACTGAGCAATCTCCTTGTCTGAGATTAAAGTTTGAACTGACA TAATTTTGAAATTTTCATCTTTGATTTTCAGGTTCTTGGGTGAACTTCTCTGGAAATATTGGAAAACTACTCATATCCCT GGTATATATCATACTTTTTCACTGTCAATCAACCCTCACCTTCTTTAAAATTGTATTCTGATTCCACAATTTTTCATTCC TTTTGTAAGAGAAAATGATTTTTTCTATAAAAATGCTACAAGCCTACAACTCAAGTTTATGAAATGCTTAAGCTCATATA ACATTGCTAATATGCTAATTAACCATTGCAGATATCTGTATTCTTTGACATCCTCTTCATGATCCAACACTATCTACTAT ATCCTGCTTCAAAACGCAAATCAGAGACATCTCCTGACCTAGATAATCCCAAGTCTTCCAATAGGCAATTGTCTGATAAT GTCTAGGATGTAACTTGTTTTACAATACTTCAAGGAATGAACTATTTCTAGCTATTTGCAATTTTTCCTATTGGGAGAAA ATTAGATAGATATATATCCAACCCTTAAGTTGTAAATGCTATCATAGTCCAATTACATTGAAGCAGCATCAAAGTCTTTA GTGTCCATTTGTTCTGTAAAATTTGATCCTCTATAGCCAATTTCTCTTTATCTCTTCTCCATCAGATATTTGAGCTATTA ATTATATATCCGAGCTTTTTTTTGACGACTAG
CDS sequence (LotjaGi1g1v0617400.11) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCATCATCTTGGAATTCAGAACCACTCCATGTTTCCTATGAAGCTCTGGGCTGGTTTGCTTTTGTTTGCTGGTCCAT CAGTTTCTACCCACAAGTCATCTTAAACTTTCGAAGGAAAAGTGTGGTGGGGCTGAACTTTGATTTCATAGTGCTGAATC TGACCAAGCACACAGCCTATCTCATATACAATGCATCTTTGTACTTCAGCCCTGCCATTCAGAAACAGTACAGAGAGAAA TATGGAGAGAAACAGATGATACCTGTGGCGGCTAATGATGTTGCTTTCTCAATCCATGCCGTTCTTTTGACAGCAATTTC CCTGTTCCAGATTGCAATCTATGATCGTGGAAGTCAGAAAATCTCAAAAATCGCTTATGGGATCCTCCTTGTTGCGTGGT CGGTCGCTGCAGTGTGTTTCTTTATAGCCTTGCACAACCATCATTGGCTCTGGCTGCTCTCAATCTTCACTGCAATCCAA ATCTCTATGACGGTTATCAAATATATTCCCCAGGCAGTGATGAACTTCATGAGAAAAAGCACAGATGGATGGAGCATTGG CAACATTCTACTAGACTTTTCAGGAGGATTAGGAAACTATTTACAAATGGCAATGCTATCAATAGATCAAGGTTCTTGGG TGAACTTCTCTGGAAATATTGGAAAACTACTCATATCCCTGATATCTGTATTCTTTGACATCCTCTTCATGATCCAACAC TATCTACTATATCCTGCTTCAAAACGCAAATCAGAGACATCTCCTGACCTAGATAATCCCAAGTCTTCCAATAGGCAATT GTCTGATAATGTCTAG
Protein sequence (LotjaGi1g1v0617400.11) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSSWNSEPLHVSYEALGWFAFVCWSISFYPQVILNFRRKSVVGLNFDFIVLNLTKHTAYLIYNASLYFSPAIQKQYREK YGEKQMIPVAANDVAFSIHAVLLTAISLFQIAIYDRGSQKISKIAYGILLVAWSVAAVCFFIALHNHHWLWLLSIFTAIQ ISMTVIKYIPQAVMNFMRKSTDGWSIGNILLDFSGGLGNYLQMAMLSIDQGSWVNFSGNIGKLLISLISVFFDILFMIQH YLLYPASKRKSETSPDLDNPKSSNRQLSDNV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 3 | 259 | 257 | 4.9E-142 | – | |
| PANTHER | 3 | 259 | 257 | 4.9E-142 | ||
| Phobius | 12 | 30 | 19 | - | – | |
| TIGRFAM | 13 | 244 | 232 | 1.2E-67 | ||
| TMHMM | 15 | 37 | 23 | - | – | |
| Pfam | 15 | 71 | 57 | 7.8E-20 | ||
| SMART | 27 | 58 | 32 | 3.5E-7 | ||
| Phobius | 31 | 41 | 11 | - | – | |
| Phobius | 42 | 63 | 22 | - | – | |
| TMHMM | 50 | 72 | 23 | - | – | |
| Phobius | 64 | 93 | 30 | - | – | |
| TMHMM | 87 | 109 | 23 | - | – | |
| Phobius | 94 | 112 | 19 | - | – | |
| Phobius | 113 | 123 | 11 | - | – | |
| TMHMM | 122 | 144 | 23 | - | – | |
| Phobius | 124 | 143 | 20 | - | – | |
| Phobius | 144 | 148 | 5 | - | – | |
| Phobius | 149 | 169 | 21 | - | – | |
| TMHMM | 149 | 171 | 23 | - | – | |
| Pfam | 153 | 207 | 55 | 1.7E-13 | ||
| SMART | 166 | 197 | 32 | 4.9E-8 | ||
| Phobius | 170 | 188 | 19 | - | – | |
| TMHMM | 184 | 206 | 23 | - | – | |
| Phobius | 189 | 208 | 20 | - | – | |
| Phobius | 209 | 219 | 11 | - | – | |
| Phobius | 220 | 244 | 25 | - | – | |
| TMHMM | 221 | 243 | 23 | - | – | |
| Phobius | 245 | 271 | 27 | - | – | |
| MobiDBLite | 250 | 271 | 22 | - | – | |
| MobiDBLite | 257 | 271 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0617400.11, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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