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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0617400 |
Transcript ID | LotjaGi1g1v0617400.2 |
Related isoforms 10 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Cystinosin like; TAIR: AT5G40670.1 PQ-loop repeat family protein / transmembrane family protein; Swiss-Prot: sp|P57758|CTNS_ARATH Cystinosin homolog; TrEMBL-Plants: tr|I3T3G0|I3T3G0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0617400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:116401504..116410069) extracted from Lotus japonicus Gifu genome v1.2.
GTTACAACCTGGTAACTAATCACACTCCATTTTCTTTTGAACAGAGGCTATATATATTGGTATTGGTAATAGAGGTTCAA GAATCACATTTACGTGTGGGACAAAACTTCGACACTAGAAGAAAATATTGGGGGTCCACAACTCAATATACATTGAATTT GTTGGTTAATTTCTTCTACTTGAAAGTGAGGGAAAAAATCTGAGAAAGAAGCTATGTCATCATCTTGGAATTCAGAACCA CTCCATGTTTCCTATGAAGCTCTGGGATGGTTTGCTTTTGTTTGCTGGTCCATCAGTTTCTACCCACAAGTCATCTTGAA CTTTCGAAGGAAAAGGTACCAGCCCAAAAAGCAATATTTTATATTATCATCATGTGATTTTCTCTACAAATTAATTAATC TTATAAATTATCTTGCTTTTCTTTTAGGCTTTCTTTTTATTTGGTTTTCTTTTGTGTTATAGTGTGGTGGGGCTGAACTT TGATTTCATAGTGCTGAATCTGACCAAGCACACAGCCTATCTCATATACAATGCATCTTTGTACTTCAGCTCTACCATTC AGAAACAGTATAGAGAAAAATACGGAGAGAAAGAGGTTTGTTCTTGTTATTAGTACTGATATGTCTGTTTTCCTTTTGGA AGCTAAATTGATGACTCAATTTCCTCTCTGTTTTAGATTAAAAATTGCTGATAATGTTAATGGACAATGTTGAACAAGGC ACAATTTAGTATTAATGATATCAATTTAGTTACTCTTTGTATGAGTGGAAGCAAAAGTGCAAAACTAAACATTCATGTCG AGAAGTCTCATATTGACTAGAGATATGATACGGCCAAAATAGTTCTTATAAAGGATGTATTAACCCTCCATCTCAATCAA GTTTTGGGGTAGCGTTAGGCCTAACCCAAATTGTAATAGTGAGTCTAGCTTCTAAACGTTCAGAATTGATTCGGAACCTC TAATTGTCGATCTAAACACTGGTAGTTAAATGTTAGCAGAGATCTAACTTCTTTTCTTTATTGATTATTTCAGATGATAC CTGTGGCAGCAAATGATGTTGCTTTCTCAATCCATGCTGTTCTTTTGACAGCAATTTCCTTGTTCCAGATTGCAATCTAT GATGTTAGTGCTGTGTTCCTTTTCATTGAGTTTTTATACAATGTTCTTTGGATTAATGTATGATATTCATCATGAAAGTG GATATATTTTCGGATTGTGCAGCGTGGAAGTCAGAAAATCTCTAAAGTTGCTTATGGGATCCTCCTTGTTGCGTGGTCGA CCGCTGCAGTGTGTTTCTTTATAGCCTTGCACAACCATCATTGGCTCTGGCTGCTCTCAATCTTCACGTATGTTGTGTGT TTTCATTTGTTACAAGTTAACTTCCTGTTGTGTATGATGGTATTTTAGAATTTCTTTCTGACTTGTGTTGAAACTAATCA ACTTGCAGTGCTATCCAAATCTCTATGACGGTTATCAAATATATTCCACAGGTTAGGATCAATTCAAATTTGTATAAATT CCTTTTTAATTTCTGTATCCCTATGTTTCTATTGATGCCTGTAATGTTCAATTTGATTGCTGAGATTTTTATTAACTGTT TGAACTAAGTAGCCTATAAAAATGTGCTAGTGCTATCATCAATGAACCTTTCTTTGAAATGCATGTGCATAATCTGAAGA AGAGCTACTTACTGACTTTTCTTTGATGTAGTGCTTGTTTTGATACACGATGGGAAACCATAGTGAAACCAAAATCACGA AGGACATAAGCAACTTCACTTAGCTTTCGCGGCTGTCCACCATGATTTTGGTCTCATCGTGGTTCTCACCTTGTATTCAG ACATGCACATAACAATAGAGGATTGTTTTATGTTTCCTTGGTCAAAAGTGGACAAAATTTCTTTTCCCTAAAGTTATGTT ACTCATCCATCTTAACACATTGTGTTGTGAATGTAGGCAGTGATGAACTTCATGAGAAAAAGCACAGATGGATGGAGCAT TGGCAACATTCTACTAGACTTTTCAGGAGGGTTAGGAAACTATTTACAAATGGCAGTGCAATCAATAGATCAAGGTCTGT CACTGTCATAGACATTACTAGGCAATCTTCTTGTCTGAGTTTAAAGATTGAACTGACATAATTTTGAAATTTTCATCTTT GATTTTCAGGTTCTTGGGTGAACTTCTATGGAAACATTGGAAAACTACTCATATCCCTGGTACGAATCATACTTCAATTT TTCTATATCAATCAGTACTCACCTTCTTTTAAGTTTTTATTCTGATCCACTATTTTTCCTTCCTTTTATTAGAGAATAAA ATGAATTTCTTGGATAAAAATGCTACATGCCTAGTTGCCTACAATTCAAGTTTATAAACAGGGTCTTGGATTGAAAATCA AATGTTTAAGCTCATATAACATTGCTAACTGATGGAATAAATCAACCATTGCAGGTATCTGTATTCTTTGACATCCTCTT CATGATCCAACACTATCTGCTATATCCTGCTTCAAAACGCAAATCAAAGACATCTCCTGACCTTGATAATCCCAAGTCTT CAAATAGGCAACTGTCTGATAATGTTTAGGATGTAACTTTTTTTTAATACTTCAAGGAATGAAATTTTCTAGCTATTTGC AAATTATCCTATTGGGAGAAAAATAGATAGAATATATATATATCTTATTAATTAATCTGTGAAGTAGGCATATCCCGATT AGCTTTTCTCCAGTTATTAGATGAACAGATTAAAGGTTTCCCATGAGAAGAACATTTAAGTCATTTAAAATGTAAACTTG TTACTCCAATTTTAAACCAGTTTTAAGCAATAAGGCTGTCACGCGATCACGCCCATTGCCTGTGACTACCATGAACGACA GCTTTTGAAGATTAATTTGGGGAATGAATGTCTTGGTTTTGTGTTTATTGGATATTAGTGCTTATTGGTTCTATGTTCAC GCTTGAAGATTCAATACTATTAGCCTTTGCCCTTTGGTGAAACTTGCAGAAATCATATCCAATGTCACATAGAGGATTAA GAAATGGGGCGCTAAAAGAAAATGGCTAGAGTCATTAACAAGGGAAGAAGGTCACGTGACTCACTAATCTGAACATATTA CATCCTAGATTAAATGAGATCAATGGTGGAAAATTAGTGTAAGAGTGTAAGATTTATAAGAGTGTAAATTTAGCCCTGCT CTTGAAACTTATGTCAGTTTCATTAAATTGTCAGTCCTTTTTTATCCAGTAAATTACATGGATCTTACTCCTAATTTCAT GAGAGCAAAATATATATTTTCACAGCACATTTATCTTTCACGGGAGCCAATCGGTATGAATCATTACTTAAGAAAAATCA AATATGGATCGTTTTAATCAACCACGTGTTAGTATAATATTCTAAGTAGTTTTGAACTGAAAAGACCAAGATTAATTTGT TTTCAAAACATAAATCTAAATAATATTTAATTTTCAAAAAAATATTAAATTAAAAATAGGGTTAATCTTCAAATTAGTCA TTGTATTTGTGTCGCCGTCTAAAGTAGATCTCTCGTCGGAAAAGTTATTGAAAATGATCGCACTTGTTATAAATTGTTTG GGGCAAGTCATCGTCGGAATCCGGAGCTCCGACGAGAGATGATTTGGCTAGCCGACATGGAATGAAAAAAATTAAAATAT TTTACATGTCAGTTTTATTAATGTAATTAACAAAATTAAACCCTAATTAACTAACTAACCCTAATCTAATTAACAAAATA AGTTTCCCCCCAAATTGTCTCCAAAATCCCCCTAGAATTAACTCAAATTCCAAATCAGAACACCCTCAAATTTGAACCCT AATCGTTTTCCATCTTCAATCATCTTTCCTGAACCTCCATCGACATCATCTTCACCCCCAATTTTCATCATCTCATTAAT TATTATCTTATTGGGGTCTAACCCGCCTCTCTTTGAGGATTAATTTTACATATAATGTACATAATGTAGGATAAGAGATA AAGTTATACGCTACAAGCACAACAAATAAGATATTATTATTCTGTTATCTTACTTTATCTTTTTATTCTATGCATCAAAG AACCCAAAATTAAAACAATAAGTAGTTGTTATTTTCCCTTTATGGGTTCAACTGTATATATGACACATACCATCTCTAGC AGGTAGAGGAGTGTGGTATATAGAGAACAAGAAATTTTCATTTTAAAACTATTTTATCTAAATTATTTATTAATGAATTT ATTTTATTGTTAATTTTAGTTCTTAATATTTGTCATTAAAGTCAATTTTTAAGTTTATAATTTTTTTTATTTAATGTTTG GTAGTTTTTTTTACGGTCTAATTAATGTAGGTAGTTAAATAGTTTTTTTTCTCGTTACAATACAATTTTTCCATGTTTTT AATTTTATTATTTAATATATTTATTACAAACCAATTTTTTTTCTTAATGTATTTTGATAGAAAGGTAAAGAATTGTTATT ACTTAATGTATTTAATTCAAAAATTCAAGATTTTACATATATATATTTTGATGATACGTAAAATTTAAAGTTAACTGGGG CAGCAGTAGTAATTGATAAGAAAAAAGTTATTCCTTTTGAGTTAAAAAAATATTCATTTTTTATGAATTAGTCGTTTTTT ATTAAATTTATGAATAAATAAATAATTTTAACTTAGTAGCATTAATATATTATAATAATTAGTATTTTTATATTTATAAA TTAGTATATTATTAATTATAAAAATCTATATATTGGAATAATTTTAATTTGGGATGAAGTTAAAAAGGGAATAGAAAATT GCTATTTTATCTTATTAGATTCTAACCACGCCTCTCCATGATGATTTTTTTTTGACGGAAAATTATCGGAAGAATATCCA AGAGGATACATGATTGAATACATGGAGGAACACATTGAAACCAAGACTCATCTCCATGATCCAGAGAATATTTTGCAGCA CATCAGCTGATTTATTTGCTTGTCTAAAAACATGCACAAAGGAAACAAAACTAAAACTAGAAACTAATAACTTTTTAAAA TTCAGCTGCTACAAGCCCCAATTACGTGTTACTGGACTTTGCCATTGGTTTGCTCTTTGATGACCAATTTACTATCTGAT TCAACCATTACCTTGCTAAAACCATGTTGCATTGCCAACCGTAGTCCTTCCAATACTCCCATAAGCTCGGCAACAACCAC TCCATGATGATTAATTTTACATATAATGGATATAATATGATAATATCTTTTTTTTAAAAAAAAAAATAAGAGATAAGATT ACATTATTATATCTACTAGCACAATAAAATAAAATAAAAATATGTGTGCACAACAAATAAAGATATGATTGTGTTATCTT ACCATATCTTTATATCCCCATAAAACAAATCCTAAAATTAAAACAATAAGTAGTTGGTTCTTTTCCCTTTTTCGGTTGAA CTGTGTACGTATAACATCTCTAGCAGGTTGAGGAGTGTGGTATAGAGAACGAGAAATTAGGTAAATTCACAATAGGGTTT GTACTTTGTATCTCCGTCCGTGAATGCATATTGAATGCATATTCAACAATAGGTTTGTACTTTGGAAATTAAACACCGTT CTTTAATGAGCACAGCCTAATTATAGATCATACAAATGTTCCGATTTTAGGAGTAACACATGAATAGTAAACTCAAACAT GCTCCTTGGTCACAAATCCTGTCTCCATACACTCTCAGATTCATAATCCTAGAAAAAATGGTTTTCTTTAAATTTAACGC CGATCCACGTTTGAATCAACGTGACACAAAATTAGATTGCTGTGTTGGAATGTGTTACAACCTGGTAACTAATCACACTC CATTTTCTTTTGAACAGAGGCTATATATATTGGTATTGGTAATAGAGGTTCAAGAATCACATTTACGTGTGGGACACAAC TGTGACACTAAAAGAGAATATTGGGGGTCCACAACTCAATATACATTGAATTTGTTGGTTAATTTCTTCTCCTTGAAAGT GAGGGAAAAAATCTGAGAAAGAAGCTATGTCATCATCTTGGAATTCAGAACCACTCCATGTTTCCTATGAAGCTCTGGGC TGGTTTGCTTTTGTTTGCTGGTCCATCAGTTTCTACCCACAAGTCATCTTGAACTTTCGAAGGAAAAGGTACCAACTCAA AAAGCAATATTTTATATTATCATCATGTGATTTTCTCTACAAATTAATTAATCTTATAAATTATCTTGCTTTTCTTTTAG GCTTTCTTTTTATTTGGTTTTCTTTTGTGTTATAGTGTGGTGGGGCTGAACTTTGATTTCATACTGCTGAATCTGACCAA GCACACAGCCTATCTCATATACAATGCATCTTTGTACTTCAGCTCTACCATTCAGAAACAGTATAGAGAAAAATACGGAG AGAAAGAGGTTTGTTCTTGTTATTAGTACTGATATGTCTGTTTTCCTTTTGGAAGCTAAATTGATGACTCAATTTCCTCT CTGTTTTAGATTAAAAATTGCTGATAATGTTAATGGACAATGTTGAACAAGCTAGGCACAATTTAGTATTAATGATATCA ATTTAGTTACTCTTTGTATGAGTGGAAGCAAAAGTGCAAAACTAAACATTCATGTCGAGAAGTCTCATATTGACTAGGGA TATGGTACGGCCAAAATAGTTCTTATAAAAGATGTATTGACCCTCCATCTCAATCAAGTTTTGGGGTAGCGTTAGGCCAA ACCCAAATTGTAATAGTGAGTCTAGCTTCTAAACGTTCAGAATTGATTCGGAACCTCTAGGTGTCGATCTAAACACTGGT AGTTAAATGTTAGCAGAGATCTAACTTCTTTTCTTTATTGATTATTTCAGATGATACCTGTGGCAGCAAATGATGTTGCT TTCTCAATCCATGCTGTTCTTTTGACAGCAATTTCCTTGTTCCAGATTGCAATCTATGATGTTAGTGCTGTGTTCCTTTT CATTGAGTTTTTATACAATGTTCTTTGGATTAATGTATGATATTCATCATGAAAGTGGTTATATTTTCGGATTGTGCAGC GTGGAAGTCAGAAAATCTCTAAAATCGCTTATGGGATCCTCCTTGTTGCGTGGTCGATCGCTGCAGTGTGTTTCTTTATA GCCTTGCACAACCACCATTGGCTCTGGCTGCTCTCAATCTTCACGTATGTTGTCTGTTTTCATTTGTTAGTTAACTTCCT GTTGTGTATGATGGTATTTTAGAATTTCTTTCTGACTTGTGTTGAAACTAATCAACTTGCAGTGCTATCCAAATCTCTAT GACGGTTATCAAATATATTCCACAGGTTAGGATCAATTCAAATTTGTATAAATTCCTTTTTAATTTCTGTATCCCTATGT TTCTATTGATGCATCTAATATTCAATTTAATTGCTGAGATTTTTATGAACTGTTTGAACTAGGTAGCCTATAAGAATGTG CTACTGTAAACATCAAAGAATCATATTTTGAAATGCTTGTGCATAATCTGAAGAAGAACTACTAACTGATTTTGCTTTGA CGTAGTGTGTGTTTAGATACACGGTGAAAAATCACAATGAAGTTAAAATCATGTTGAACAGAACATAGAAGTAACTTCTC TTAGCTTTTGCGACTGTCCACCATGATTTTGGCCTCAATGTTGTTTTCACCGTGTATCCAGCACTTAATAATTGAGGATT TTTTTGTGTTTCCTTGGTCAAAAAGTGAATGAAATTTCTTTTCCCTAAAGTTATGTTACTCATCCATCTTAACACATTGT GTTGGGAAAATATTATAGGCAGTGATGAACTTCATGAGAAAAAGCACAGATGGATGGAGCATTGGAAACATTCTACTAGA CTTTTCAGGAGGGTTAGGAAACTATTTACAAATGGCAATGCAATCAATAGATCAAGGTCTGTCACTGTCATATACATTAG TAAGCAATCTTCTGAGTTTAAAGTTTGAACTGATGACATGATTTTGAAATTCTATCTTTGATTTTCAGGCTCTTGGATGA ACTTCTACGGAAACATTGGAAAACTACTCATATCCCTGGTATAGATAATACTTTTTCTCTGTTAATCTCCACTCACCTTC TTCAAAATTGTATTCAGAGCCCACAATTTTTCATTCCTTTTGTTAGAGAAAATGAATTTTTTGTATAAAAATACAACAAG CCTACAATTCAAGTTTATCAAATGTTTAAGCTCATATAGCTAATTTGCTAATTAACCATTGCAGGTATCTGTATTTTTTG ACATCCTCTTCATGATCCAACACTATCTGCTATATCCTGCTTCAAAACGCAAATCAGAGACATCTCCTGACCTAGATAAT CCCAAGTCTTCCAATAGACAATTGTCTGATAATGTCTAGGTTGTAACTTGTTTTACAATATTTCAAGGAATGAACTATTT CTAGCTATTTGCAATTTTTCCTATTGGGAGAAAATTAGATAGAATATATATCCAACCCTTAAGTTGTAAATGCTATTATA GTCCATTTACATTGAAGCAGCATCAAAGTCTTTAAAATATATTTTTTTAGTACGTATATTCTCCACGTAAGACAATTCAA TATGAG
CDS sequence (LotjaGi1g1v0617400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCATCATCTTGGAATTCAGAACCACTCCATGTTTCCTATGAAGCTCTGGGATGGTTTGCTTTTGTTTGCTGGTCCAT CAGTTTCTACCCACAAGTCATCTTGAACTTTCGAAGGAAAAGTGTGGTGGGGCTGAACTTTGATTTCATAGTGCTGAATC TGACCAAGCACACAGCCTATCTCATATACAATGCATCTTTGTACTTCAGCTCTACCATTCAGAAACAGTATAGAGAAAAA TACGGAGAGAAAGAGATGATACCTGTGGCAGCAAATGATGTTGCTTTCTCAATCCATGCTGTTCTTTTGACAGCAATTTC CTTGTTCCAGATTGCAATCTATGATCGTGGAAGTCAGAAAATCTCTAAAATCGCTTATGGGATCCTCCTTGTTGCGTGGT CGATCGCTGCAGTGTGTTTCTTTATAGCCTTGCACAACCACCATTGGCTCTGGCTGCTCTCAATCTTCACTGCTATCCAA ATCTCTATGACGGTTATCAAATATATTCCACAGGCAGTGATGAACTTCATGAGAAAAAGCACAGATGGATGGAGCATTGG AAACATTCTACTAGACTTTTCAGGAGGGTTAGGAAACTATTTACAAATGGCAATGCAATCAATAGATCAAGGCTCTTGGA TGAACTTCTACGGAAACATTGGAAAACTACTCATATCCCTGGTATCTGTATTTTTTGACATCCTCTTCATGATCCAACAC TATCTGCTATATCCTGCTTCAAAACGCAAATCAGAGACATCTCCTGACCTAGATAATCCCAAGTCTTCCAATAGACAATT GTCTGATAATGTCTAG
Protein sequence (LotjaGi1g1v0617400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSSWNSEPLHVSYEALGWFAFVCWSISFYPQVILNFRRKSVVGLNFDFIVLNLTKHTAYLIYNASLYFSSTIQKQYREK YGEKEMIPVAANDVAFSIHAVLLTAISLFQIAIYDRGSQKISKIAYGILLVAWSIAAVCFFIALHNHHWLWLLSIFTAIQ ISMTVIKYIPQAVMNFMRKSTDGWSIGNILLDFSGGLGNYLQMAMQSIDQGSWMNFYGNIGKLLISLVSVFFDILFMIQH YLLYPASKRKSETSPDLDNPKSSNRQLSDNV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 11 | 11 | - | – | |
PANTHER | 3 | 259 | 257 | 8.0E-143 | ||
PANTHER | 3 | 259 | 257 | 8.0E-143 | – | |
Phobius | 12 | 30 | 19 | - | – | |
TIGRFAM | 13 | 244 | 232 | 1.7E-70 | ||
Pfam | 15 | 70 | 56 | 2.4E-19 | ||
TMHMM | 15 | 37 | 23 | - | – | |
SMART | 27 | 58 | 32 | 3.5E-7 | ||
Phobius | 31 | 41 | 11 | - | – | |
Phobius | 42 | 63 | 22 | - | – | |
TMHMM | 50 | 72 | 23 | - | – | |
Phobius | 64 | 93 | 30 | - | – | |
TMHMM | 87 | 109 | 23 | - | – | |
Phobius | 94 | 112 | 19 | - | – | |
Phobius | 113 | 123 | 11 | - | – | |
TMHMM | 122 | 144 | 23 | - | – | |
Phobius | 124 | 143 | 20 | - | – | |
Phobius | 144 | 148 | 5 | - | – | |
TMHMM | 148 | 170 | 23 | - | – | |
Phobius | 149 | 169 | 21 | - | – | |
Pfam | 153 | 208 | 56 | 7.2E-14 | ||
SMART | 166 | 197 | 32 | 4.9E-8 | ||
Phobius | 170 | 180 | 11 | - | – | |
Phobius | 181 | 203 | 23 | - | – | |
TMHMM | 183 | 205 | 23 | - | – | |
Phobius | 204 | 222 | 19 | - | – | |
TMHMM | 220 | 242 | 23 | - | – | |
Phobius | 223 | 244 | 22 | - | – | |
Phobius | 245 | 271 | 27 | - | – | |
MobiDBLite | 250 | 271 | 22 | - | – | |
MobiDBLite | 257 | 271 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0617400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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