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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0618000 |
| Transcript ID | LotjaGi1g1v0618000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G16210.1 F-box family protein; Swiss-Prot: sp|Q9LU24|FB145_ARATH Putative F-box protein At3g16210; TrEMBL-Plants: tr|V7B4N7|V7B4N7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0618000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:116477169..116481016) extracted from Lotus japonicus Gifu genome v1.2.
GCCAAAATTGACCGCTAAATGGTCAGAATCAGGCTTCGTAAAAATCCAACCATACCAATAAATATTGAAGTGTTTGTCAT CATCTTGCACTATATTTTATCATTCAATCAACACCACGCTGAAGATATCAAACAAAACTCACTCTTACAAATTTCAACTC TCAGGAAACAGAGGAAACAGAGATGGTGATGATGATGAACATGGAGGAGCATTTGCCACGAGAATTGGTTTCCAACATCC TCTTGAGGTTGTCTGCCGAGGATTTGATGAAATCCAAGTGCGTTTGCAAATACTGGTTCAATCTCATAACTGATCCTCAT TTCATTACAAATTACTATGTTGTTTACAACAACAATCTCATGCAGTTTCAGAGCCAAGAGGAGAAACTCTTCATCATTAG AAGACCCTTTCTTTCTGGGCTTAAAACTTACATTTCTGTTCTCTCTTGGAATATCAATGATCCCAAAGGAATTGTTTCCT CTGAAATTTTGAACCCTCCTTATGAATATGATTCTGACTACAAATACTGGACTGAAATCATGGGTCCTTGCAATGGCATA TACTTCCTAGAAGGCAATCCAAATGTCATGATGAACCCTTCTTTGAGACAGTTCATAGTTTTGCCTCAATCCCCTTCATG TGGTTCTTTCACTGATTATGCTGGGTTTGGGTTTGACCCCAAAACTAATGACTACAAAGTTGTTGTCATCAAGGACCAAA TTGGGATTTGGACAGCTGAGTTATACAGCTTCAATTCCAACTCTTGGAGGAAACTTGATGCTGCTCTCCCACTTCCAATT CAAATCTGGGGTTCATCTCGAGTTTACACTTTTGTCAATAATTGTTATCACTGGTTTGGCTTTGTTGATGCTTCCAATAG AACAGGAGATGTAGTTGTGGCATTTGACATGGTTAAGGAATCATTCAGGAAGATAAAAGTGCCAAAGATACGTTATTCTT CACAAGAAGATTTTGCAACTCTGGTTCCCTTTAACGAATCTGCTACTGTTGGTGTTATTGTGTACCCTGTCAGAGGAACC ACAGAGAAAGGCTTTGATGTGTGGGTGATGAAAGATTACTTGGATGAAGGGTCTTGGACTAAGCAATACACAGTTGGACA CAATGAAGTGATGTACAAGCTTGTGGGGTTTTATGGAAGCAATCGGTTTCTATGGAAGGACAGTGATGAAAGATTGGCGT TGTACAACCCTGATTCTGAAGTAAAAACAAAGGATCTTCAGGTTTATGGAAGGTATGATTCAATTAGAGCTGCTAGATAC ATGGAAAGCCTTGTTTCACTTCAAAGGGGAAAAGAAAGAGGTCACCAATTTTTTTCATGTAGTTTGGTTCCTGACCCTCT ACTAAGTCAGGGTGAATGATTTTCTTTTCAGGTAGCTGCTAGATTACTTGAATTATACAGTCTGAATACCAATTCTTATT CTGATTATACTGTTCGTCTCCCACTTCCCTTTCAATGTTGGGATTTAATCTCTAAAGTGTACACTTTTGTCAATGACTGT TGTCATTGGTTTGGGTATGATATTGGACCCAAAAGAACAGAGGAAGATGCGGTTCTCACCTTTGACATGGTTCATGAGTA CTTTAGAAAGATAAAAGTACCTAAAATACGACATTCAGAAAAGGAGTTGGCAACTCTGGTTCCCTTTCACGACAGGGCTA CAATTTGTATCATTGTGTACCCTGCTAAAGGACTGGACAAAAGCTTTGTTGTGTGGGAGATGGAACGTTACTGTCTTGAT GAAGGGGCTTGGATTAAGAAATACACTGTTGGACAAGTCCAAGTCATTCACCAGCTTGTGGGGTTTTATGGGGGAAACCG ATTTCTTTGGACTGGAAGGTGCCGAAAGTTTGGGCCAGTAAGATTGGTGTTTTTCAAGTCAGATGACAGTAACACCGCAA CTCAAAGAAGGGATCTTCAGGTTTATGGAGAGTCTGATTCAATAGATGCTGCTACATACATGGAAAGCATCATTTCTCTT CGAAGGGGAAACGAAATTGATGGCCAGTGCTTTTCATGCAGATTGGTTCCTGAGTCCTGATCATCTACTAAATCAGAGTG AGTAATTTTATTTTCTAGCATCTTATGATTTGCTAGTATGTTAATTAGCAAATCAATACTTGAAATTTTAGAAAGTTCAC TGTGATTGATCCATCTAACAAAAGCTGCTGCTATAATCTGCTAGTATGTTAATTTGCTTGAATGTTGATTGACAAATCAA AACTTGAAACTCTAGAAAGTTGACTGAATGTGCATCAATGCCTTCCACGCTTTCACAATACTTGATGATTTCTGCTTGCT TTTGGGTTTTAGGAAGTGTTCCAACATAAGGATGGTCTATATAAATTATCAAGCCTTGACTTTCTGATGCTCATTGTCAT TGTGCCTGTGAATTCACTATACCTTTATGCAATCCTGCAAGCTCAGTTTGTATCCAGTATCTATACTTGATCGGAAACGC AATTTATACTTCAATACTGATCTTTCTGATGCTCTTAGTCATTGTGCCTGTGAATTCACTATACTCTTTAGCTTTATGCA ATCCTACAAGCTCAGTTTGTATCCAGTATCTATACTTGTCCAATTTTTTCTTCATAAGCCACAAAGTGAAACATGAAAAC ATGAATTTTTATTTGACATGATTTTCATTTTAGTTTCATTAGTTTTTGAAAATGATAAACATAAAAGTGGAGATATTTTG GATTTGAAACAGTGTCATTACTTATTGTTAATATGTTTGTAATAATGTAATGTATTTTCTGTGACACTAGGTGGGTGCCA TAACCCTGATTTCTTATTTGAATTTTATTTCAGAAATTTAAGGATCCCTTTGATGCATGGATGGAGTTAGACATTAACAA GATTACTGGAGCAGATATCTCTAATAAGATCAGTGATTCAGCTATCAAGCCATAGTTGATTTTAGCTATTTAGCATGAGT TTTTTGGGGCCTGACTTGACTTTTAGTTGGATAAATTTTCTTTGAGCTAACTACAGATTTGTGAGAGTCATTCCAGGATT AGTTTACTGTCTCAAATGAACTATTTGGTTTATCTGATCGATCAAAGACTTGTTTCAGTTTCATCAATGTATGATGTTCA TTAACATCAAATGCCAAGACATTTAACTACATTGTTTTCATGTTTACTAGTAGTCAATTCGTCAAAGTTTTGTTGCTGTT ATTATGTTATCTATTGGCTAATCAGTTGTTGTGGTAAGATATATATCCTCATTGATGCATATTAATGGCTTTTTATTTTT TTATTAATTGATTTCTATTTTCCTAACTCCTAAGCGTTTGAGAAGTCAGTACAGTTATTGAGATTGAAAGTATTGAGGTT TTGACTTGTACTTATTTGATTGTGTCTCATATAAACAAATCTTGGCGTGAGATCATGAGCAGTCTCTGTTTTGTGAATAA AGACTATTGAAGTGACCAAGGTCGTAAAAATTAACTTATATTGTCATGTTCAACATCTTACCCACAAAAACCCAGAAAAG AGCATGTCAAGCATAATAGTCTGGAAGACATGATCGACTGCTTCAACACGGGTGCCACTCTGTGGCATTGCAATTTGCAA AAACATCAACAACACATGACTCGATTCAGTTAAAAATTGGAACTGTTTCAATTAGATTTGAAGTTGAAGTTGAACCAACA ACCAATAGGAACAAGGAAACACCAAGAATTGTTACAGGAATCTACTTTAATTTCCACACTTTTATGAATTTCAAATTTAT GAATTATTGAAATCACGCTCGGCTGAGGTTCTTTAGGTGACGGTGCTAATTGGGCTCAGATGAGGGATTGGAAATTTTTC ATAATTTG
CDS sequence (LotjaGi1g1v0618000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGATGATGATGAACATGGAGGAGCATTTGCCACGAGAATTGGTTTCCAACATCCTCTTGAGGTTGTCTGCCGAGGA TTTGATGAAATCCAAGTGCGTTTGCAAATACTGGTTCAATCTCATAACTGATCCTCATTTCATTACAAATTACTATGTTG TTTACAACAACAATCTCATGCAGTTTCAGAGCCAAGAGGAGAAACTCTTCATCATTAGAAGACCCTTTCTTTCTGGGCTT AAAACTTACATTTCTGTTCTCTCTTGGAATATCAATGATCCCAAAGGAATTGTTTCCTCTGAAATTTTGAACCCTCCTTA TGAATATGATTCTGACTACAAATACTGGACTGAAATCATGGGTCCTTGCAATGGCATATACTTCCTAGAAGGCAATCCAA ATGTCATGATGAACCCTTCTTTGAGACAGTTCATAGTTTTGCCTCAATCCCCTTCATGTGGTTCTTTCACTGATTATGCT GGGTTTGGGTTTGACCCCAAAACTAATGACTACAAAGTTGTTGTCATCAAGGACCAAATTGGGATTTGGACAGCTGAGTT ATACAGCTTCAATTCCAACTCTTGGAGGAAACTTGATGCTGCTCTCCCACTTCCAATTCAAATCTGGGGTTCATCTCGAG TTTACACTTTTGTCAATAATTGTTATCACTGGTTTGGCTTTGTTGATGCTTCCAATAGAACAGGAGATGTAGTTGTGGCA TTTGACATGGTTAAGGAATCATTCAGGAAGATAAAAGTGCCAAAGATACGTTATTCTTCACAAGAAGATTTTGCAACTCT GGTTCCCTTTAACGAATCTGCTACTGTTGGTGTTATTGTGTACCCTGTCAGAGGAACCACAGAGAAAGGCTTTGATGTGT GGGTGATGAAAGATTACTTGGATGAAGGGTCTTGGACTAAGCAATACACAGTTGGACACAATGAAGTGATGTACAAGCTT GTGGGGTTTTATGGAAGCAATCGGTTTCTATGGAAGGACAGTGATGAAAGATTGGCGTTGTACAACCCTGATTCTGAAGT AAAAACAAAGGATCTTCAGGTTTATGGAAGGTATGATTCAATTAGAGCTGCTAGATACATGGAAAGCCTTGTTTCACTTC AAAGGGGAAAAGAAAGAGGTCACCAATTTTTTTCATGTAGTTTGGTTCCTGACCCTCTACTAAGTCAGGGTGAATGA
Protein sequence (LotjaGi1g1v0618000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVMMMNMEEHLPRELVSNILLRLSAEDLMKSKCVCKYWFNLITDPHFITNYYVVYNNNLMQFQSQEEKLFIIRRPFLSGL KTYISVLSWNINDPKGIVSSEILNPPYEYDSDYKYWTEIMGPCNGIYFLEGNPNVMMNPSLRQFIVLPQSPSCGSFTDYA GFGFDPKTNDYKVVVIKDQIGIWTAELYSFNSNSWRKLDAALPLPIQIWGSSRVYTFVNNCYHWFGFVDASNRTGDVVVA FDMVKESFRKIKVPKIRYSSQEDFATLVPFNESATVGVIVYPVRGTTEKGFDVWVMKDYLDEGSWTKQYTVGHNEVMYKL VGFYGSNRFLWKDSDERLALYNPDSEVKTKDLQVYGRYDSIRAARYMESLVSLQRGKERGHQFFSCSLVPDPLLSQGE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 14 | 14 | - | – | |
| ProSiteProfiles | 5 | 55 | 51 | 9.895 | ||
| PANTHER | 6 | 313 | 308 | 1.8E-37 | – | |
| PANTHER | 6 | 313 | 308 | 1.8E-37 | – | |
| SUPERFAMILY | 6 | 60 | 55 | 6.93E-13 | ||
| Gene3D | 7 | 47 | 41 | 6.3E-8 | – | |
| Pfam | 10 | 45 | 36 | 5.3E-6 | ||
| SMART | 11 | 51 | 41 | 2.1E-6 | ||
| Phobius | 15 | 21 | 7 | - | – | |
| Phobius | 22 | 25 | 4 | - | – | |
| Phobius | 26 | 398 | 373 | - | – | |
| TIGRFAM | 120 | 331 | 212 | 3.5E-25 | ||
| Pfam | 233 | 311 | 79 | 2.4E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0618000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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