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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0620500 |
| Transcript ID | LotjaGi1g1v0620500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT5G66520.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520; TrEMBL-Plants: tr|V7C3M2|V7C3M2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0620500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:116793342..116795294) extracted from Lotus japonicus Gifu genome v1.2.
GAACTTTATACCTTGCTAACAATGCTAAGAGGATAGACATGTACCACTTAAACCAACCGGTTGTTGCGAGAACCAATTTT TATTATTCTTCCATTTCGTATTGTCATTCCATCATACTAACCAGCATTGCTGTTTCCGGTATCCTCACCAAGCAAGCAAG ACTGATGTGGGAAGTTTATGACGATGATTTCTTTGATCGAGTCCAAGAGTTTAACTCTCAAGAACGCACTCTCTAGATTG ATTGAACAATGCAAGAACCTCAGGGAACTCAAAAGAATTCACACCCAGATTTTAACGTCTCCAAATTTACACTCAAGTGA CCAATATCATCTCATTACTCGGCTACTTTTCTCTTGCTCCTTCGGAAGCTCTTTCACCTATGCCACCAATGTTTTTCACA TGATCAATAACCCAGATCTTCGTGTCTACAACATCATGATCAGAGCATATGCAGGCATGGATGGAGTTGATGACAGGCAT TTCTGCAGGGCTATGGTGCTGTACAAGAAAATGCTTTGCGATGGCATTTTTCCCAATTGCCTTACTTTTCCATTCCTCAT AAAGGGTTGCACTAGGTGGATGGATGGAGCTAGTGGTGAAATTGTGCATGCCCAAGTGGTGAAGTTTGGATTTTTGAGCG ATGTTTTTAATGGGAATTCTTTGATCAATTTGTATATGACTTGTGGGTTGTTGAGTAATGCACGGAAGCTGTTTGATGAA ATTCCTGTTACAGATGTTGTCACTTGGAACTCGATGGTTATTGGGTATTTGAGAAATGGAGGGCTTGATAATGCATTGGA TTTGTTTAGGAAGATGAATGGGAAGAATATCATATCTTGGAATTCGATTATTACGGGGTTGGTTCAAGGTGGACTTGCAA AGGAGGCGCTCGAACTTTTCCATGAAATGCAGCAGATTTCGGTTAAACCAGATAAAATTACAATAGCTAGTGTCCTTTCA GCTTGTGCTCAACTAGGAGCTATAGACCATGGGAAATGGGTGCATTCTTATCTGAGAAGAAACGGCATAGAGTGTGATGT GGTGATTGGAACAGCGCTTGTCAATATGTATGGCAAGTGTGGACTTGTGCAGCAAGCATTTGAGATCTTTGAAGAAATGC CTGAGAAGGATACCTCGGCATGGACAGCGATGATTTCGGTGTTTGCTCTTCATGGATTAGGTTGGAAGGCTTTTGATTGC TTTTTAGAGATGGAAAGAGCCGGAGTTAAGCCAAACCATGTTACATTTGTTGGATTATTATCAGCTTGTGCTCATTCTGG CTTGGTGGAGCAAGGTCGTTGGTGCTTCGATGTAATGAAACGTGTTTACTTAATCGAACCACAGGTTTATCACTATGCTT GCATGGTTGATCTTCTTAGTCGAGCAAGGCTCTTTGATGAGTCAGTGATTCTTATCAGGAGCATGCCAATGGAACCGGAT GTTTATGTCTGGGGTGCATTACTCGGAGGCTGTCAGATGCATGGAAACGTTGAATTGGGAGAAAAAGTGGCTCTTCATTT GATAGACTTGGAGCCTCACAATCATGCTTTCTACATGAACTTGTGTGATATATATGGCAAAGCTGGCAGGTTTGATGCTG CTAAAAGAATTAGGAATTTATTGAAAGAAAGAAGAGTTCAAAAGAAAATCCCTGGCTGTAGCATGATTGAAATTAATGGG GTGGTTCAAGAATTTTCAGCTGGAGGGTCATCTGAACTTCCTATGAAAGATCTGGTATTGATCTTAGATAGATTATGTAA CGAGATGAAGATATGAGTTTCATATTTTCTGTGTTCCATATTCAGTTTCAGATCCAATAGTTTCTTGAAAAAGGATGAAT TACAAAGAATATTGAGGAATAAGACAACCCTTAAGAATTGGAAAAAGTTCCACCTATGTAAACTAGAAAGACATAACTAT CAATGGAAAGAGAAGACATAATTTGAATCTGCC
CDS sequence (LotjaGi1g1v0620500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGATGATTTCTTTGATCGAGTCCAAGAGTTTAACTCTCAAGAACGCACTCTCTAGATTGATTGAACAATGCAAGAA CCTCAGGGAACTCAAAAGAATTCACACCCAGATTTTAACGTCTCCAAATTTACACTCAAGTGACCAATATCATCTCATTA CTCGGCTACTTTTCTCTTGCTCCTTCGGAAGCTCTTTCACCTATGCCACCAATGTTTTTCACATGATCAATAACCCAGAT CTTCGTGTCTACAACATCATGATCAGAGCATATGCAGGCATGGATGGAGTTGATGACAGGCATTTCTGCAGGGCTATGGT GCTGTACAAGAAAATGCTTTGCGATGGCATTTTTCCCAATTGCCTTACTTTTCCATTCCTCATAAAGGGTTGCACTAGGT GGATGGATGGAGCTAGTGGTGAAATTGTGCATGCCCAAGTGGTGAAGTTTGGATTTTTGAGCGATGTTTTTAATGGGAAT TCTTTGATCAATTTGTATATGACTTGTGGGTTGTTGAGTAATGCACGGAAGCTGTTTGATGAAATTCCTGTTACAGATGT TGTCACTTGGAACTCGATGGTTATTGGGTATTTGAGAAATGGAGGGCTTGATAATGCATTGGATTTGTTTAGGAAGATGA ATGGGAAGAATATCATATCTTGGAATTCGATTATTACGGGGTTGGTTCAAGGTGGACTTGCAAAGGAGGCGCTCGAACTT TTCCATGAAATGCAGCAGATTTCGGTTAAACCAGATAAAATTACAATAGCTAGTGTCCTTTCAGCTTGTGCTCAACTAGG AGCTATAGACCATGGGAAATGGGTGCATTCTTATCTGAGAAGAAACGGCATAGAGTGTGATGTGGTGATTGGAACAGCGC TTGTCAATATGTATGGCAAGTGTGGACTTGTGCAGCAAGCATTTGAGATCTTTGAAGAAATGCCTGAGAAGGATACCTCG GCATGGACAGCGATGATTTCGGTGTTTGCTCTTCATGGATTAGGTTGGAAGGCTTTTGATTGCTTTTTAGAGATGGAAAG AGCCGGAGTTAAGCCAAACCATGTTACATTTGTTGGATTATTATCAGCTTGTGCTCATTCTGGCTTGGTGGAGCAAGGTC GTTGGTGCTTCGATGTAATGAAACGTGTTTACTTAATCGAACCACAGGTTTATCACTATGCTTGCATGGTTGATCTTCTT AGTCGAGCAAGGCTCTTTGATGAGTCAGTGATTCTTATCAGGAGCATGCCAATGGAACCGGATGTTTATGTCTGGGGTGC ATTACTCGGAGGCTGTCAGATGCATGGAAACGTTGAATTGGGAGAAAAAGTGGCTCTTCATTTGATAGACTTGGAGCCTC ACAATCATGCTTTCTACATGAACTTGTGTGATATATATGGCAAAGCTGGCAGGTTTGATGCTGCTAAAAGAATTAGGAAT TTATTGAAAGAAAGAAGAGTTCAAAAGAAAATCCCTGGCTGTAGCATGATTGAAATTAATGGGGTGGTTCAAGAATTTTC AGCTGGAGGGTCATCTGAACTTCCTATGAAAGATCTGGTATTGATCTTAGATAGATTATGTAACGAGATGAAGATATGA
Protein sequence (LotjaGi1g1v0620500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTMISLIESKSLTLKNALSRLIEQCKNLRELKRIHTQILTSPNLHSSDQYHLITRLLFSCSFGSSFTYATNVFHMINNPD LRVYNIMIRAYAGMDGVDDRHFCRAMVLYKKMLCDGIFPNCLTFPFLIKGCTRWMDGASGEIVHAQVVKFGFLSDVFNGN SLINLYMTCGLLSNARKLFDEIPVTDVVTWNSMVIGYLRNGGLDNALDLFRKMNGKNIISWNSIITGLVQGGLAKEALEL FHEMQQISVKPDKITIASVLSACAQLGAIDHGKWVHSYLRRNGIECDVVIGTALVNMYGKCGLVQQAFEIFEEMPEKDTS AWTAMISVFALHGLGWKAFDCFLEMERAGVKPNHVTFVGLLSACAHSGLVEQGRWCFDVMKRVYLIEPQVYHYACMVDLL SRARLFDESVILIRSMPMEPDVYVWGALLGGCQMHGNVELGEKVALHLIDLEPHNHAFYMNLCDIYGKAGRFDAAKRIRN LLKERRVQKKIPGCSMIEINGVVQEFSAGGSSELPMKDLVLILDRLCNEMKI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 45 | 139 | 95 | 1.6E-5 | ||
| PANTHER | 55 | 213 | 159 | 1.5E-88 | – | |
| ProSiteProfiles | 80 | 119 | 40 | 7.761 | ||
| ProSiteProfiles | 120 | 154 | 35 | 5.053 | ||
| Gene3D | 154 | 269 | 116 | 5.5E-29 | ||
| ProSiteProfiles | 155 | 185 | 31 | 6.599 | ||
| Pfam | 160 | 182 | 23 | 0.13 | ||
| ProSiteProfiles | 186 | 216 | 31 | 10.413 | ||
| TIGRFAM | 188 | 213 | 26 | 0.0013 | ||
| SUPERFAMILY | 197 | 477 | 281 | 3.8E-5 | ||
| Pfam | 216 | 264 | 49 | 5.1E-11 | ||
| ProSiteProfiles | 217 | 251 | 35 | 11.915 | ||
| PANTHER | 218 | 284 | 67 | 1.5E-88 | – | |
| TIGRFAM | 219 | 252 | 34 | 6.4E-6 | ||
| ProSiteProfiles | 252 | 286 | 35 | 7.958 | ||
| PANTHER | 270 | 485 | 216 | 1.5E-88 | – | |
| Gene3D | 270 | 383 | 114 | 1.0E-29 | ||
| ProSiteProfiles | 287 | 317 | 31 | 9.109 | ||
| TIGRFAM | 292 | 318 | 27 | 0.0015 | ||
| Pfam | 317 | 365 | 49 | 2.3E-9 | ||
| ProSiteProfiles | 318 | 352 | 35 | 10.106 | ||
| TIGRFAM | 321 | 353 | 33 | 5.1E-4 | ||
| ProSiteProfiles | 353 | 383 | 31 | 7.3 | ||
| Gene3D | 384 | 510 | 127 | 1.3E-12 | ||
| ProSiteProfiles | 389 | 419 | 31 | 6.116 | ||
| ProSiteProfiles | 421 | 451 | 31 | 5.766 | ||
| ProSiteProfiles | 455 | 489 | 35 | 7.432 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0620500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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