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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0631800 |
| Transcript ID | LotjaGi1g1v0631800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT3G26782.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782, mitochondrial; TrEMBL-Plants: tr|I1MLB3|I1MLB3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0631800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:118572191..118577225) extracted from Lotus japonicus Gifu genome v1.2.
CACGCTGACAATATAAGTCAATGATCAGTTTCACAACTATCGATTATTAGTACCTTACCTTGGTTAACACCTAAAAACTA AACTAAGAACATGGAACTCAGACTTCCCTCCAAAATTTTAACTAGAAAACGATTGTAAAAGTGAACAAGGTACCTAACTA TGCATGGAGACGAAAACCACAACACCTTACGATGATTTCATCTGTGTCGAGAATCACTCGTGCTCGTGCAGCATCTCCTC ATGGAAAACGTGGAAACTCATCGACGGCGACCAAAACCGCGAACCTCGCGAGCATGTTCGGGAAATACGTCGACAAAACC AGCGTCTCTAGTTGGAACTCCGTCATCGCCGACCTCGCCCGCAGCGGCGACTCCGTCGAGGCTCTCAGCGCCTTCTCCTC CATGCGCAAGCTCTCTCTTCACCCCAACCGTTCCACATTCCCCTGCACCATTAAATCATGCTCTGCACTCTCCGACCTCC GCGCTGGAGTGCAAACCCACCAGCAAGCTTTTGTGTTTGGCTTTGAATTGGACGTGTTCGTTTCGTCTGCTCTGGTGGAC ATGTATGCGAAGTGTGGCCACTTGGAAGATGCGCGGAAGCTGTTCGATGAAATTCCTGAAAGAAATGTTGTTTCCTGGAC CTCCATGATTTCTGGCTGTGTGCAAAATGATCGTGCCCGCGAAGCCGTTTGTGTATTCAAGGAGCTGTTGGTTGAGGAGA GTTGGGGTATGGGGTGCGCGGAGGGTGTTTTGGTGGATTCGGTTCTTGTGGGGTGTGTTATTTCCGCGTGTTCTCGAGTG TGCTCCAAGGGTTTGACTGAAGGGGTTCATGGCTTTGTGATCAAGAGGGGGTTTGAGGGGTGGTTGGTGGTTGGGAACAC TTTGATGGATGCTTATGCTAAGTGTGGGGAGATGGGTGCGTCTAGGAAGGTTTTTGATGGGATGGAGGAGAATGATGCTT GTTCTTGGAACTCTCTGATTGCTGAATATGCACAAAATGGATTATCAGCAGAAGCTTTCAGTGTTTTTAGTGATATGGTG AAGAGCAGCAAGGTTAGATATAATGGTGTCACATTATCTACGGTGTTGTTAGCCTGTGCAAATTCAGGAGCTCTGCAGAT AGGGAAGTGCATACATGATCAGGTATGTTACATGATCCATTGTTCTAGTTTATGATCTCACATAATTTGGCTATAACTAT TTATCATATTTTTTTGTCATTATTGTTTGTTTGTACAACTCAGTCTAGGTTGCATTACATAGCAGGTCCCAAGCTACTTA AAACTTTGTTACCTCCCTATAACATCATGGATCAATGATGTGATTATAGTACAATATTATGGCATCATTTGAACCGAGTA GCCAACTCCATCTGGTGTTAAAATGTTGCTGTTGTTGTAACTGTATGCTTGTACAAATTTTTAGCTAGGACCTAAGTGAG AAATGTCGGTCTCACTAGCTGTTTTCTTTGTCTATAGGTTATAAGGATGGAATTGGAGGACAATTTGTTTGTGGGTACTT CTATAGTTGATATGTACTGCAAATGTGGGAGAGTGGAGATGGCTAGGAAGGCATTTGATCGCATGAAAGAGAAGAATGTA AAGTCATGGACTGCTATGGTGGCTGGTTATGGAATGCATGGCCGTGCAAAAGATGCTATGGAAATCTTCTACAAGATGAT AAGATCCGGAGTCAGACCGAATTACATTACTTTTGTGTCGGTTTTGGCTGCTTGCAGCCATGCTGGTCTGTTGAAAGAAG GCTGGCACTGGTTTAATAGAATGAAGTGTGAATTTAATGTTGAACCTGGGATTGAGCATTATTCATGCATGGTTGATCTC CTTGGGCGTGCTGGCTATCTTAATGACGCTTATAGTTTGATCCAGAAAATGAATGTGAGACCTGATTTTATAGTGTGGGG ATCTCTTCTTGGGGCTTGCAGGATGCATAAAAACTTGGAACTTGGGGAGATGGCTGCAAAAAAACTATTCGAGTTAGATC CAAGTAACTGCGGGTATTATGTTCTACTCTCCAATATTTATGCTGATGCTGGAAGGTGGAATGATGTTGAGAGGATGAGA ATATTGATGAAGAGTAAGGGAATGCTCAAAACCCCTGGGTTCAGCATAGTTGAACTTAAAGGTAGGATACATGTATTTTT AGTTGGAGACAAAGAGCATCCTCAGCATGAGAAGATTTATGAGTATTGGGACAAATTAAATGTCAGGCTGCAAGAACTTG GATATATGCCAAATGTAACATCGGTGCTTCATGACGTTGATGAGGAAGAGAAAGGAATGATTCTAAGAGTTCATAGTGAG AAACTAGCCGTGGCCTTTGGGATCATGAATTCAGTTCCTGGGTCAATAATCCAGATCATAAAAAATCTTAGGATTTGTGG TGACTGCCACATTGCAATTAAATTAATTTCCAAAATAGTAAATAGAGAAATCGTTATCAGAGATTCAAAGCGATTTCATC ATTTCAAGGATGGGTTGTGTTCGTGTGGAGACTATTGGTGACAGTTACTGAGAGAAAAAGGATCAGAAATCAGAATCTGT GTTGAATGATTGATCCAGTTATCTCGATATTACATTTGTGAATATGTGTATGGATCAATCGGTTCCAATAAGAACAATGA AGAGATTTTCAACTGGCCTTTTAGATGGCTTACTCCCAGTTCAAATATATTACGCAACTGTACTATACTACAAAAGCTCA ATAAAACAAATTGCCAGAGCATCATGTTATAACTCTTGTGGGTACTTATTGTGCTTATCTAATAGCTAACTTCTTCCAGA ATTATCGATAAGAGTTTGTTGCTTGGTTGGAATACCGGACTCTTAGGATGTGAAGTCTACAAAATATCACGGAGACCAAC CTTCGAAGATCTTGGCCATAGACATTCTTCGTGGTGTTGATATCTGAGGTTGACTGCGTTCTGAATAAGCATTGGAGTTC CTTAAAGAAGTCTGTAGGACCTTGTTCTCACGCTTCAAAGCTTCCACCTCTAACTGAAGCCTTTTAATGGTTTCTCTCTT TTCATCATTTCTTTGGACCAACTCTACCAACTGATGCAGATTATCCTCTGTAAGTTTTGTAATTTGATACTTCAACATTG TCCACTTACTGTCAAATTTGAAATTGATCATTGATGGATCTTCATTTTTCTCATTTAATTCCAAATCCTCAAGATTCATT AAAATATTCTCCTCTGTGGAAAAATTTGTAATTACCTCTTCCATTTGAGAATCTCTGCGTTCATGTTTGGATTTAAATTT CATGCTGCATGAGCCAGCTGAGGATAATTCATGGTATTCATCATCTTGCTTGTTTAAAAGCTCAAAATGCATGTCAATGC CATTGAATTTTCCATTTGAGTGCTCCTTGCGAGATTTGGGATAGCGATTACAACCCTGCTTGAGTATTTCATCCTCTAAG TTGCCTGTTGCTGTTTTATTGCAGATAGCAGATCTGGTTTTTAATGTACCAGAAGATGATGAAGATCCTGAAAGACAGGT CCTGCTGGATGCTTTAGACTTCAGTTGATTATATGATATGACTAAAACACGGTAAGATTGGCCAAGTTCTTCAAGCATCT CTATGAGATCTTCTTTCCATTTGTAATGCACATGATCTTGGGTTCCACCTTCCAAAATGGTCATCATGGCCTCCATCTTC GCATTCAAATCTAAAAATCAATCAAGAGTACTGAGTTTGAGTGAAAACTGCAGGATAACAACTCAAAGATCTTGTGAAGA TGATGCCAAAAATGTATGCTTTACTATTAACAACCCCTAGAAATAAACCAATCATCCCAGGCTTAAAATCAGAAATTTTT AAGGGATGGCTGGTAGCATGTTTGAATAAGCTTGTTTTTTCTCAGAATCAATTTTGACATGCAGTGGCTACACATAAAAG TCTCTCCCAAAATTGATGTTTGCTTTAAAATCAATTGTAGAAGGATTTCCAAACATGTGTTCCAGCATTTTTGTTTTGTT GATAATGACTATCAGATAATAATTGCCTATTTGATTTGCTTTGAATCATGTTTCCAATGGCAAACGCTGACAGAATTAAC TGAAATTGTTTTCTTTTTTTTACTTCTCAAAAGCTATGCAGTGAGTAAAATTGATTTAGAGAGAAAAAACTTTTTAATTT TTCCTGTCAAGTACAATTTATTCTGGATAAGAGACCCACAGTTTTTCTTAAAATTTCTATGCTTACATGAAAAAAGTGAT TGTACTTTTATACCATTCAAACAAACCTGATCTTCTAAACTCACTCCTAAATACCATTTTCAAATGGTTCTAGTCTACCA AAATCTAGAAGAAAAACGTTTTTGTAGCATGTCTGAATTCACATTGAAACCTGCTAGAATTACATATCCCCACAAAGCTA CCCTTTTCCATAATCACTTCTCCCCAAATTGAAAACATATCAAAATACACACTTAGATATGCATGCGTTCAACCTTTGAT GAACTTTCCTGTGGACAATCCTAAATCGACTATTTTGACCAACATTTTGGCTGTTTTTTTTTTCATCCATTCTTATAGTT ACAACCACCATCACTCTTTACCTAACTATATTATATGCTTTCAACCTCAATGTCAAGTCAAAGAAAGTTAATGACTTGTC AAAATTGGAAATACTAGTTACACAGAACCCTGTATGAGAGAGAGAGAGAGAGAGAGAGACCTGATATGGTTGTTTGAAGC CACTGAGAATGGTGGATATGAGCACAACTCCATGATTCTGGATCTTTATTCTCCATTAAGATATGTGTCATTACCTCAAA GCATGATAATTTATCAGAGACTAGTGGGAGCAATTAACAGGGTAATGTGTAAAGAAGCAAGTAAAGAATTTGAAAATCAA GTTCCAGGTGTATATAGTGGCCAATAGACGTTACGTTAAGCATATTCTTTGTCAAATTTGAACGCATCGTGTATACAAGA GCTCCATGATGATAGCGACCACACAACGTTATGCTCAATATTCGGCACATTGATTGCTATAATTTTGATTTCTTT
CDS sequence (LotjaGi1g1v0631800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTTCATCTGTGTCGAGAATCACTCGTGCTCGTGCAGCATCTCCTCATGGAAAACGTGGAAACTCATCGACGGCGAC CAAAACCGCGAACCTCGCGAGCATGTTCGGGAAATACGTCGACAAAACCAGCGTCTCTAGTTGGAACTCCGTCATCGCCG ACCTCGCCCGCAGCGGCGACTCCGTCGAGGCTCTCAGCGCCTTCTCCTCCATGCGCAAGCTCTCTCTTCACCCCAACCGT TCCACATTCCCCTGCACCATTAAATCATGCTCTGCACTCTCCGACCTCCGCGCTGGAGTGCAAACCCACCAGCAAGCTTT TGTGTTTGGCTTTGAATTGGACGTGTTCGTTTCGTCTGCTCTGGTGGACATGTATGCGAAGTGTGGCCACTTGGAAGATG CGCGGAAGCTGTTCGATGAAATTCCTGAAAGAAATGTTGTTTCCTGGACCTCCATGATTTCTGGCTGTGTGCAAAATGAT CGTGCCCGCGAAGCCGTTTGTGTATTCAAGGAGCTGTTGGTTGAGGAGAGTTGGGGTATGGGGTGCGCGGAGGGTGTTTT GGTGGATTCGGTTCTTGTGGGGTGTGTTATTTCCGCGTGTTCTCGAGTGTGCTCCAAGGGTTTGACTGAAGGGGTTCATG GCTTTGTGATCAAGAGGGGGTTTGAGGGGTGGTTGGTGGTTGGGAACACTTTGATGGATGCTTATGCTAAGTGTGGGGAG ATGGGTGCGTCTAGGAAGGTTTTTGATGGGATGGAGGAGAATGATGCTTGTTCTTGGAACTCTCTGATTGCTGAATATGC ACAAAATGGATTATCAGCAGAAGCTTTCAGTGTTTTTAGTGATATGGTGAAGAGCAGCAAGGTTAGATATAATGGTGTCA CATTATCTACGGTGTTGTTAGCCTGTGCAAATTCAGGAGCTCTGCAGATAGGGAAGTGCATACATGATCAGGTTATAAGG ATGGAATTGGAGGACAATTTGTTTGTGGGTACTTCTATAGTTGATATGTACTGCAAATGTGGGAGAGTGGAGATGGCTAG GAAGGCATTTGATCGCATGAAAGAGAAGAATGTAAAGTCATGGACTGCTATGGTGGCTGGTTATGGAATGCATGGCCGTG CAAAAGATGCTATGGAAATCTTCTACAAGATGATAAGATCCGGAGTCAGACCGAATTACATTACTTTTGTGTCGGTTTTG GCTGCTTGCAGCCATGCTGGTCTGTTGAAAGAAGGCTGGCACTGGTTTAATAGAATGAAGTGTGAATTTAATGTTGAACC TGGGATTGAGCATTATTCATGCATGGTTGATCTCCTTGGGCGTGCTGGCTATCTTAATGACGCTTATAGTTTGATCCAGA AAATGAATGTGAGACCTGATTTTATAGTGTGGGGATCTCTTCTTGGGGCTTGCAGGATGCATAAAAACTTGGAACTTGGG GAGATGGCTGCAAAAAAACTATTCGAGTTAGATCCAAGTAACTGCGGGTATTATGTTCTACTCTCCAATATTTATGCTGA TGCTGGAAGGTGGAATGATGTTGAGAGGATGAGAATATTGATGAAGAGTAAGGGAATGCTCAAAACCCCTGGGTTCAGCA TAGTTGAACTTAAAGGTAGGATACATGTATTTTTAGTTGGAGACAAAGAGCATCCTCAGCATGAGAAGATTTATGAGTAT TGGGACAAATTAAATGTCAGGCTGCAAGAACTTGGATATATGCCAAATGTAACATCGGTGCTTCATGACGTTGATGAGGA AGAGAAAGGAATGATTCTAAGAGTTCATAGTGAGAAACTAGCCGTGGCCTTTGGGATCATGAATTCAGTTCCTGGGTCAA TAATCCAGATCATAAAAAATCTTAGGATTTGTGGTGACTGCCACATTGCAATTAAATTAATTTCCAAAATAGTAAATAGA GAAATCGTTATCAGAGATTCAAAGCGATTTCATCATTTCAAGGATGGGTTGTGTTCGTGTGGAGACTATTGGTGA
Protein sequence (LotjaGi1g1v0631800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MISSVSRITRARAASPHGKRGNSSTATKTANLASMFGKYVDKTSVSSWNSVIADLARSGDSVEALSAFSSMRKLSLHPNR STFPCTIKSCSALSDLRAGVQTHQQAFVFGFELDVFVSSALVDMYAKCGHLEDARKLFDEIPERNVVSWTSMISGCVQND RAREAVCVFKELLVEESWGMGCAEGVLVDSVLVGCVISACSRVCSKGLTEGVHGFVIKRGFEGWLVVGNTLMDAYAKCGE MGASRKVFDGMEENDACSWNSLIAEYAQNGLSAEAFSVFSDMVKSSKVRYNGVTLSTVLLACANSGALQIGKCIHDQVIR MELEDNLFVGTSIVDMYCKCGRVEMARKAFDRMKEKNVKSWTAMVAGYGMHGRAKDAMEIFYKMIRSGVRPNYITFVSVL AACSHAGLLKEGWHWFNRMKCEFNVEPGIEHYSCMVDLLGRAGYLNDAYSLIQKMNVRPDFIVWGSLLGACRMHKNLELG EMAAKKLFELDPSNCGYYVLLSNIYADAGRWNDVERMRILMKSKGMLKTPGFSIVELKGRIHVFLVGDKEHPQHEKIYEY WDKLNVRLQELGYMPNVTSVLHDVDEEEKGMILRVHSEKLAVAFGIMNSVPGSIIQIIKNLRICGDCHIAIKLISKIVNR EIVIRDSKRFHHFKDGLCSCGDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 13 | 13 | - | – | |
| MobiDBLite | 1 | 26 | 26 | - | – | |
| PANTHER | 32 | 100 | 69 | 1.4E-120 | – | |
| ProSiteProfiles | 44 | 78 | 35 | 9.986 | ||
| Gene3D | 45 | 210 | 166 | 4.4E-30 | ||
| TIGRFAM | 47 | 79 | 33 | 0.0031 | ||
| Pfam | 47 | 74 | 28 | 0.0022 | ||
| ProSiteProfiles | 79 | 113 | 35 | 5.305 | ||
| PANTHER | 98 | 203 | 106 | 1.4E-120 | – | |
| ProSiteProfiles | 114 | 148 | 35 | 10.358 | ||
| Pfam | 119 | 146 | 28 | 3.7E-4 | ||
| TIGRFAM | 120 | 147 | 28 | 0.0013 | ||
| Pfam | 147 | 173 | 27 | 1.1E-5 | ||
| TIGRFAM | 147 | 173 | 27 | 1.3E-4 | ||
| ProSiteProfiles | 149 | 175 | 27 | 5.338 | ||
| PANTHER | 196 | 318 | 123 | 1.4E-120 | – | |
| Gene3D | 211 | 320 | 110 | 4.7E-17 | ||
| ProSiteProfiles | 224 | 254 | 31 | 7.147 | ||
| Pfam | 229 | 254 | 26 | 0.0043 | ||
| TIGRFAM | 229 | 255 | 27 | 8.4E-4 | ||
| ProSiteProfiles | 255 | 289 | 35 | 9.58 | ||
| Pfam | 255 | 303 | 49 | 2.3E-8 | ||
| TIGRFAM | 258 | 285 | 28 | 3.0E-4 | ||
| ProSiteProfiles | 291 | 325 | 35 | 5.941 | ||
| PANTHER | 310 | 522 | 213 | 1.4E-120 | – | |
| ProSiteProfiles | 326 | 356 | 31 | 9.405 | ||
| TIGRFAM | 331 | 359 | 29 | 3.1E-5 | ||
| Gene3D | 334 | 550 | 217 | 3.0E-41 | ||
| SUPERFAMILY | 336 | 513 | 178 | 2.85E-5 | ||
| Pfam | 356 | 403 | 48 | 3.9E-8 | ||
| ProSiteProfiles | 357 | 391 | 35 | 12.43 | ||
| TIGRFAM | 360 | 392 | 33 | 3.2E-7 | ||
| ProSiteProfiles | 392 | 422 | 31 | 7.563 | ||
| ProSiteProfiles | 428 | 458 | 31 | 7.059 | ||
| Pfam | 431 | 455 | 25 | 0.023 | ||
| ProSiteProfiles | 494 | 528 | 35 | 6.928 | ||
| Pfam | 530 | 654 | 125 | 1.7E-39 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0631800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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