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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0637300 |
| Transcript ID | LotjaGi1g1v0637300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT3G26630.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q38959|PP257_ARATH Pentatricopeptide repeat-containing protein At3g26630, chloroplastic; TrEMBL-Plants: tr|K7MF69|K7MF69_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0637300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:119248885..119250870) extracted from Lotus japonicus Gifu genome v1.2.
ATTTGATACATATAAAAAAGAAAGATAGTAACAAAAATTTAACATGAGAGAATTCTCTTTAAAGAGAGTTCAGGTTCACG ATGTTGAACTGAAGAGATGAGTTTTATTCTACTATTTTCTTTGAATTTTCTCATTTTCTGTGATTGACATAAATGTTACC TTATCCAATTGACCACAACAATCCACAGTTTGTGCGGTGTAGCATTCCTTAGCAATTAGCACCATATCTTTTCAATGTGG GCCAAATTCAAATTGGCACTGGCAATTGCAACAACATTGACATGAAGATTTCATGTTGCAACCCTGATGCTAATGTCCCT CACTTCAATACCCCAACAACAAGGTTTGATTCACAACAAGCTCTTGTCACTCTTGAAAATTGTTGCAATTTCAAGCAGCT CAAGCAAGTTCATGGTAGAATAATCCGGTCTGGTCTCACCCATGACCAAGTGCTTCTCAGGAAGCTTCTTCAGCATTCTT GTGCATATGGCAAAATGAACTATGCTAGTTTGGTGTTTGATCAAATCAATGCCCCTGATTCATTCACCTGGAATGTCATG ATTAGAGGTTGTACTTTGAGTGGTTCCCCTGAACATGCCCTTGTTTTGTTCAAGGAAATGCTATTGAAGGGGTTTGCACC TGACAAGTTTACATACCCTTTTGTGATTAAGGCTTGCATTGCTTCTAATGCCTTTGATTTTGGTAGAGCAGTGCATGCTT TAGCTATTAAAATGAGATTCTGGGGTGACACTTATGTGCAGAACACTATGATGAATTTTTACTTCAAGTGTGGGAATGAA GAGGATGGGTGTAAGGTGTTTGATAAAATGCGCGGCTGCAGTGTGGTCTCTTGGACGACTTTGATTGCTGGGCTTATTGC TTGTGGGAAAGTGGATCGTGCCAGGGAAGTGTTTGATGAAATGCCTTCGAAGAATGTAGTGTCGTGGACAGCGATGATTG ATGGGTATGTGAAATGCCAGCGCCCGGTTGAAGCTTTCGATTTGTTTGAAGGGATGCAGATTGAGAACGTGAGGCCGAAT GAGTTCACTTTAGTGAGCTTGGTCAGTGCTTGTACTGAGATGGGTAGCCTTAAGTTGGGGAAATGGATTCATGATTATGC TATCAAGAATGGTATTGAGCTTGGCCCTTTTTTGGGTACTGCTCTTATTGACATGTATAGCAAATGTGGAAGTTTAGATG ATGCATGGATAGTGTTTGGTATAATGACTGAGAGAAACTTGGCTACTTGGAACACAATGATCACTAGCTTGGGTGTGCAT GGGTTGAGCGAGGAAGCCCTAGACCTTTTTAAAGAAATGGAGAAGGCGAATGTAGTTCCGGATGCTGTTACTTTTGTTGG TGTTCTGAGTGCTTGTGTTCATATGCATGATGTGGAAGAAGGTGAGAGGTATTTCAGTCTCATGACAGAACATTATGGTA TATCACCAATATTGGAGCACTATGTATGCATGGTTGAACTCTATACTGGTGATAGTGAATTAGATGAGGTTTACACATCA GAGGAGGCCATGTCATTGTCAATGAAAACAAATCAAAATGTTGTGGAATTGCTCCAAGAGAGTAAACTCACTAGTGTTGA TGACATAAAGGAAGTCATAAACAAGCATTATGGGGATTTGAATTTCTCAAAACTAGATTTAGATCATTCCTCTGTGAGTT CTGTACCTGAAACCCAGGAGCTTCATGCAAGTAGATGAACACTGTTACTTTGTTAACATTCTCTATATGCTAACATATCT GCTCTAGAGCTATTGAGAGAAGCCTGCATACATAGCCAACCAGATGCCTCAAGTTTTGTGTATAAGATGCTGCTGGAACC ATAATCTTCTTGAATGTCTTTTAGAATTATACAAAGTAATAATTCTAATAATGTAATAATACAAAGGTAGACTCCTTGAT AGAAATATATATTATTAATGTAAATTGTCAAATTTTCTGATAATAAATTATAATTTTGAGTTTCTA
CDS sequence (LotjaGi1g1v0637300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGATTTCATGTTGCAACCCTGATGCTAATGTCCCTCACTTCAATACCCCAACAACAAGGTTTGATTCACAACAAGC TCTTGTCACTCTTGAAAATTGTTGCAATTTCAAGCAGCTCAAGCAAGTTCATGGTAGAATAATCCGGTCTGGTCTCACCC ATGACCAAGTGCTTCTCAGGAAGCTTCTTCAGCATTCTTGTGCATATGGCAAAATGAACTATGCTAGTTTGGTGTTTGAT CAAATCAATGCCCCTGATTCATTCACCTGGAATGTCATGATTAGAGGTTGTACTTTGAGTGGTTCCCCTGAACATGCCCT TGTTTTGTTCAAGGAAATGCTATTGAAGGGGTTTGCACCTGACAAGTTTACATACCCTTTTGTGATTAAGGCTTGCATTG CTTCTAATGCCTTTGATTTTGGTAGAGCAGTGCATGCTTTAGCTATTAAAATGAGATTCTGGGGTGACACTTATGTGCAG AACACTATGATGAATTTTTACTTCAAGTGTGGGAATGAAGAGGATGGGTGTAAGGTGTTTGATAAAATGCGCGGCTGCAG TGTGGTCTCTTGGACGACTTTGATTGCTGGGCTTATTGCTTGTGGGAAAGTGGATCGTGCCAGGGAAGTGTTTGATGAAA TGCCTTCGAAGAATGTAGTGTCGTGGACAGCGATGATTGATGGGTATGTGAAATGCCAGCGCCCGGTTGAAGCTTTCGAT TTGTTTGAAGGGATGCAGATTGAGAACGTGAGGCCGAATGAGTTCACTTTAGTGAGCTTGGTCAGTGCTTGTACTGAGAT GGGTAGCCTTAAGTTGGGGAAATGGATTCATGATTATGCTATCAAGAATGGTATTGAGCTTGGCCCTTTTTTGGGTACTG CTCTTATTGACATGTATAGCAAATGTGGAAGTTTAGATGATGCATGGATAGTGTTTGGTATAATGACTGAGAGAAACTTG GCTACTTGGAACACAATGATCACTAGCTTGGGTGTGCATGGGTTGAGCGAGGAAGCCCTAGACCTTTTTAAAGAAATGGA GAAGGCGAATGTAGTTCCGGATGCTGTTACTTTTGTTGGTGTTCTGAGTGCTTGTGTTCATATGCATGATGTGGAAGAAG GTGAGAGGTATTTCAGTCTCATGACAGAACATTATGGTATATCACCAATATTGGAGCACTATGTATGCATGGTTGAACTC TATACTGGTGATAGTGAATTAGATGAGGTTTACACATCAGAGGAGGCCATGTCATTGTCAATGAAAACAAATCAAAATGT TGTGGAATTGCTCCAAGAGAGTAAACTCACTAGTGTTGATGACATAAAGGAAGTCATAAACAAGCATTATGGGGATTTGA ATTTCTCAAAACTAGATTTAGATCATTCCTCTGTGAGTTCTGTACCTGAAACCCAGGAGCTTCATGCAAGTAGATGA
Protein sequence (LotjaGi1g1v0637300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKISCCNPDANVPHFNTPTTRFDSQQALVTLENCCNFKQLKQVHGRIIRSGLTHDQVLLRKLLQHSCAYGKMNYASLVFD QINAPDSFTWNVMIRGCTLSGSPEHALVLFKEMLLKGFAPDKFTYPFVIKACIASNAFDFGRAVHALAIKMRFWGDTYVQ NTMMNFYFKCGNEEDGCKVFDKMRGCSVVSWTTLIAGLIACGKVDRAREVFDEMPSKNVVSWTAMIDGYVKCQRPVEAFD LFEGMQIENVRPNEFTLVSLVSACTEMGSLKLGKWIHDYAIKNGIELGPFLGTALIDMYSKCGSLDDAWIVFGIMTERNL ATWNTMITSLGVHGLSEEALDLFKEMEKANVVPDAVTFVGVLSACVHMHDVEEGERYFSLMTEHYGISPILEHYVCMVEL YTGDSELDEVYTSEEAMSLSMKTNQNVVELLQESKLTSVDDIKEVINKHYGDLNFSKLDLDHSSVSSVPETQELHASR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 14 | 144 | 131 | 9.9E-18 | ||
| PANTHER | 27 | 142 | 116 | 4.7E-79 | – | |
| Pfam | 85 | 132 | 48 | 3.8E-11 | ||
| ProSiteProfiles | 86 | 120 | 35 | 12.573 | ||
| TIGRFAM | 88 | 121 | 34 | 1.7E-8 | ||
| PANTHER | 140 | 214 | 75 | 4.7E-79 | – | |
| Gene3D | 150 | 278 | 129 | 1.8E-29 | ||
| ProSiteProfiles | 156 | 186 | 31 | 8.1 | ||
| TIGRFAM | 159 | 188 | 30 | 4.0E-5 | ||
| Pfam | 161 | 186 | 26 | 0.0034 | ||
| ProSiteProfiles | 187 | 217 | 31 | 10.161 | ||
| Pfam | 188 | 215 | 28 | 8.7E-6 | ||
| TIGRFAM | 189 | 219 | 31 | 3.6E-6 | ||
| PANTHER | 200 | 273 | 74 | 4.7E-79 | – | |
| Pfam | 217 | 264 | 48 | 4.7E-12 | ||
| ProSiteProfiles | 218 | 252 | 35 | 11.652 | ||
| TIGRFAM | 220 | 254 | 35 | 7.9E-8 | ||
| ProSiteProfiles | 253 | 287 | 35 | 7.498 | ||
| PANTHER | 271 | 412 | 142 | 4.7E-79 | – | |
| Gene3D | 279 | 427 | 149 | 9.1E-26 | ||
| ProSiteProfiles | 288 | 318 | 31 | 7.224 | ||
| Pfam | 319 | 366 | 48 | 7.9E-12 | ||
| ProSiteProfiles | 319 | 353 | 35 | 12.31 | ||
| TIGRFAM | 322 | 355 | 34 | 2.0E-9 | ||
| ProSiteProfiles | 354 | 389 | 36 | 7.552 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0637300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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