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LotjaGi1g1v0652600.2

Overview

Field Value
Gene ID LotjaGi1g1v0652600
Transcript ID LotjaGi1g1v0652600.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Trafficking protein particle complex subunit-like protein; TAIR: AT1G51160.1 SNARE-like superfamily protein; Swiss-Prot: sp|Q557G3|TPPC1_DICDI Trafficking protein particle complex subunit 1; TrEMBL-Plants: tr|B7FHC8|B7FHC8_MEDTR Trafficking protein particle complex subunit-like protein; Found in the gene: LotjaGi1g1v0652600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:121194993..121198816) extracted from Lotus japonicus Gifu genome v1.2.

ATGCAATTCTTTGGGGGCTCTGAGATAAGTCCCTCGCCACCTGCGCCGACAGCTTCAGGAAACAATGGCCATATGATTTA TGTATTCAATAGGAATGGTGTATGCTTGCTCTATAGGGAGTGGAATCGCCCCCTCAGGACGTTGAATGCCCAGCAAGACC ATAAGTTGATGTTTGGTCTGCTTTTCTCGCTTAAGTCATTAACTGCCAAGATGGACCCCACTAGGTATGATTAACTCTCG AGTTTCAAAGGTTCATTTTGAGGTAGATAAAGTAACTTAACATTGCTTATGCTCTTATTCTAATGCAAGGAATACTAATG TAAATTTGTGTTTTGGTGTTGCAAAGTTTGCTTTCCTTTGTCAAGTTATTTCTATCTTGAAGTCATTGTAGTTTCTGTGT TCTCTAGGGAAGCTTTTGCAAAAGACATTATTTTCTTATGCAATACATGGACTATACTTGTAGTGCCAAAACATGAAAAG CTGATAATTGTGCCAAGGTGACAGAACTGCATTTTAAAATACACTAGTTTTTAGCTGTGTATGCTAAAATGGACTTGTAA TTAATGGTTGAAAATAATCTAAATTGAGTAATTATGGGTTGATTAGGTGCTGTATATTTTTAGGGATTACGGTAATTAGG GTAAGTGGGTAACTATAAATCCTTGTTTTACAACTCTTAGGATTTATATTTTCGTCTTTTGTATAATTGAGACACATGTA TTCACTTGACGCTTTTGAGTTTTATCTTTTTCAACATGGTATTGGTGCCAATCCTACATCTGATATTGGGCCACCCACTT TTGTCCAAAAACCATCCTAGCCCCGCGGATTTCTTAATACAATCTGCTTAGCCTCGCGGCTTTCTCAGGGCAATCTACCT AGCCTCGCGGCGTCCTCAAGGCAATAAATAATTGTCCTATAATCTCCGCTCCCCATATATTTAGTCCTACGCGTGAGGGT TAGATCTAATAAATACTTGGATAATCCTTACCTCATTAGCTAGCTTTGAGGTAGAGTTAGGCCCAGTCCAAACTCTAAAA TTGTATCAAACCCTAAGTAGAGGAAACCCTAAGTAATTACCTGATGGACTCATAGCTCACCGGTACAGAACTCTGTCAAT TTTTATTTACTCTATGCCTTGTTAACATGTGGGGTAAGTTTATGGTGTATGATTTTCCTTGACTTCATTATATGCCTACA AATAACATTTTTGGTTAATTTTATCAACAAGGTTAAATAGAACTTTTGGTTATTCTGATACATCTGTTATTATTTATCAT GGTTCTACTAGTTTTCTCATGTCCCTTATTCATGATTCATCTATTCCATATAACATCACATGTGTGTTTTGTGCTTTGCA TATTTTATATTTGACTATCTTGGCTTGTTTATTGTTGCAGTTATGACAGGAATGGATATTATGATAGATATCTTTGTTAA TTATTAAAGGAATTATATTGATATTATTGTTTCTGCTGTATACATTGTAGATTGCACTGGTAGATTTAATTCATTGTTCT CCAACCTATTGTGCAGTGCGGAGAAAGGAAATCTCGGTGTGCCTCAGTTACCTGGCCAAGGTTGTTCATTTCATAGTTTT CGCACTAATACATACAAACTTAGTTTCATGGAAAGTCCGTCGGGAATAAAGGTCAGCTGCAACAAATTTGTGTTTCCTTT TATATTTTTATAGATCCTTGTGGATACAATCACTACTTATTCTATGCATTTGTGTCAAAATGTTTTGCACCCCCTTGGCT TCTGCGTATTTGTTCATTGATTATTGTAGCTATTTGGCACTTATTTGGAATTCTGTATCTTTCTGTTATATATATTAATC TCATTTTATATCAGAAAAATGTTGGTTTGTTCACCTAAATACCTCAGTTGTGATTTGTGAATGAAACACTGAAGTGACAG AGCACAGGAAGGGGGTGGGGGGAGACAAATTTAAAACACCATGTTTTGATCTTTGGATTTGAGTTTTTGCCTGAGATAAC TTTTTGACAGACTTGCAAATTCTAATGTGGGGTTTATAAGGCCTTGGGCTCTCCAACTACAACAACTAGCTTTTGTGGTG TGGTTCTCCCAAGATTCTTATCAATTGGTATCAGAGCCTTCCTCTATGTCTCTCAGCTGCAAACGAGCGGTTCGGGTGGT GACGCTAGCATTGCAGTGTTCGCCCAAGACTAGTCAAAGGGCTAGTGCACAACCAGCCTGCGTGGGTGCCGGGGCTTCAG AGCGTGGTGGGATGCTAGGAACCCAATTGCACAGTACGGGACTTGAGAGTCCCACATTGGAAGTATGGGATTCTAATGTG GGGTTTATAAGGCCTTGGGCTCTCCAACTACAACCGCTAGCTTTTGTGGTGTGGTTCTCCCAAGGTTCTTATCAAAGAAG AACAGGGATGGCAGGAGAGTAATTCCCATAAGAGACTATGGGACAAGAGAGGTGCTGCCAATTGAGTAGCTAATTATGGG GCTGGAGGGGAACAATGAGTTGGAGAGAAAAGATTGGGGAAGTATCGTTGTGAGTGGAGGGGGAAATAGGTAAGGCTTGG AGGGACTAGGGAAAGGTAGGAAAGAATTAACATGATGCGAGAAATCAGGAAGCCTATCCTAAGGCTGGTAGTGAGGAAAT AGGAGGTCCATTGCAGTGTCATTTTCCAGTTTTATTTGCATTTCAAGAATTTTTAGAATCTCACTCTGCTATAATGACCT AAGCCTCCAGTTATTCATTATTAATACTGAAACAGCTGACTGAGGAAATGAAGTTATGATCTGACTGATAAGAGGACATA TTAGGAGCTGACTAGATTCCCAAATTATGAATCCAAAATTTCTAATTAAACATGAAAACACACTAAGCATGAAAATAATA TTTTCATTCTCCATGAACAAGAGTCTTTCCATATTATGTTTGCATACCTAATCAGATTTTTTTGGGAGGGGGGGGGGGAT ATGTTTCTATCTTGGCATCATTCAACTTTTCAACCATGGTTTAAATGGAAGCTAAATCCATTCGTAGCTCCTAATTTTCT TGTTCTTATCAACTTTGATAATTTTGATTTGTGCACAACACTTCTGAAACATGTCTCATTTTATGAAATGAAGCTGAAAC TTTCATATTTCACAATAACTATGGGCAGCATATACATCCAAGTCTTCGGTATTGCGGTGGGAATTCAAGAAAAATGAAGT AATGACTGAATTATAGTGCTGTTTTTCTCCCAATCCGTATGTATTTGAGGTTCTGCTTTAGAATAGTTAGTGTCATGCTT TTATTATGTTATGATCTCTGTCTGACATTTATCTGTCAACATAACGTTAGTGGATAATTGAGTTCTGTTGATTACACTGT ACTTTTCTTTCAGTTTTGTAGTAGATGTTGTGTGAAGTAAGATGCACTACTTAGCTCTAGTAACACCATGAGCTATTTTA GCAATTCAACAGATATATTACAGAAAGGAGTCACAAAAATAACATATATGCTTTCAGAAATACAATCAATGTAGTAATGT TCATATATGTTTCTTTGATTGTATTGTCACTCTGCCATGATTTCCACGCTCCGTGTAGATTATCTTGGTGACTCATCCTA GAACTGGTGATCTACGGGAATCCTTGAAGTATATCTACAATTTGTATGTTGAATATGTTGTGAAGAATCCACTCTATACA CCCGGATCTCCTATCAGGTAACAGAATTTATACTTCCCTGTAAATGACATGCTTGTCTATTTACCAAAAGAAGAATGGCA TTATTGTCCTGTGCATTTGTGGTCTCATTGTCATTTGTGTGCAGTTTTCTTTTTTTTTTCTTAA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0652600.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAATTCTTTGGGGGCTCTGAGATAAGTCCCTCGCCACCTGCGCCGACAGCTTCAGGAAACAATGGCCATATGATTTA TGTATTCAATAGGAATGGTGTATGCTTGCTCTATAGGGAGTGGAATCGCCCCCTCAGGACGTTGAATGCCCAGCAAGACC ATAAGTTGATGTTTGGTCTGCTTTTCTCGCTTAAGTCATTAACTGCCAAGATGGACCCCACTAGTGCGGAGAAAGGAAAT CTCGGTGTGCCTCAGTTACCTGGCCAAGGTTGTTCATTTCATAGTTTTCGCACTAATACATACAAACTTAGTTTCATGGA AAGTCCGTCGGGAATAAAGATTATCTTGGTGACTCATCCTAGAACTGGTGATCTACGGGAATCCTTGAAGTATATCTACA ATTTGTATGTTGAATATGTTGTGAAGAATCCACTCTATACACCCGGATCTCCTATCAGGTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0652600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQFFGGSEISPSPPAPTASGNNGHMIYVFNRNGVCLLYREWNRPLRTLNAQQDHKLMFGLLFSLKSLTAKMDPTSAEKGN LGVPQLPGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYNLYVEYVVKNPLYTPGSPIR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 21 21 - –
PANTHER
PTHR23249:SF16
18 153 136 5.9E-53 –
PANTHER
PTHR23249
18 153 136 5.9E-53
IPR007233
Gene3D
G3DSA:3.30.450.70
23 150 128 3.0E-42 –
SMART
SM01399
23 153 131 1.7E-43
IPR007233
CDD
cd14855
24 153 130 2.48408E-62 –
Pfam
PF04099
24 153 130 4.3E-40
IPR007233
SUPERFAMILY
SSF64356
24 153 130 1.01E-26
IPR011012

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016192
Biological process Vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
Subterm of
GO:0030008
Cellular component TRAPP complex A large complex that acts as a tethering factor involved in transporting vesicles from the ER through the Golgi to the plasma membrane. A TRAPP (transport protein particle) complex has a core set of proteins which are joined by specific subunits depending on the cellular component where a given TRAPP complex is active.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0652600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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