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LotjaGi1g1v0653800.3

Overview

Field Value
Gene ID LotjaGi1g1v0653800
Transcript ID LotjaGi1g1v0653800.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Translocase of chloroplast; TAIR: AT5G05000.1 translocon at the outer envelope membrane of chloroplasts 34; Swiss-Prot: sp|Q41009|TOC34_PEA Translocase of chloroplast 34; TrEMBL-Plants: tr|K7MY05|K7MY05_SOYBN Translocase of chloroplast; Found in the gene: LotjaGi1g1v0653800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:121326265..121329385) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCGTCCCAAGTTGTCCGTGAGTGGTCAGGAATCAACACATTTGCACCTGCTACCCAGAACAAGTTGTTTGAGCTTTT GGGGCAACTTAAACAAGAGGTTTGTTTAATTGTTTCCCTTTAATTATTTTTCTATTTAGAAATGATTTTCATGTGAAAGG ATGTTTCTTTTTGGTCTGAGAATTTATGGGTCTGTTTTGGTGTAGAATGTGAACTCCTTGACTATACTTGTTATGGGGAA AGGTGGTGTTGGCAAGTCTTCAACTGTCAACTCTATCATTGGGGAAAGAGTTGTTTCAATCAGTCCTTTTCAGGTAGGTT ATGATATGATGCTTAACCCTGATGGTTATTGGGTGCTCATTTCGATGTTATCCGTTTGTCAATTGTCATGTTTGGATGTG TAAGTTTAATACTTTTATTATCTTGAATAGTCGGAAGGGCCTAGGCCTGTGATGGTATCGCGATCAAGGGCAGGTTTTAC ATTGAACATCATTGACACTCCTGGTCTCATTGAAGGGGGATATATCAATGATATGGCACTTAATTTGATAAAACGGTTTG CTTAGATTTACCTTGTAACATTCTTCCTTTAAAGCATGTTTTTGGTATTTTCAGTGGCTTATTGTTCTTTCTTGTTACTT TTTTTGTTTGTTTGGGTGGAATCTGGTTTGTTCAGTTTCCTTCTGAACAAGACCATAGATGTTTTGCTTTATGTGGACCG CTTGGATGCATATAGAGTGGACAACTTGGACAAGTTAGTTGCTAAGGCTATAACTGATAGTTTTGGGAAAGCAATATGGA ACAGGGCTATAGTTGCACTCACACATGCCCAGTTCTCTCCACCTGATGGATTGCCTTATGAGGAATTCTTCTCAAAAAGA TCTGAGGCTCTCTTGAAAGTTGTTAGATCAGGTGCCCGGATTAAGAAAGATGCCTCCCAGGTATTCTTCTCTATAGCTTC AGTCTTATTCTTCAAATATATCTCAATGTCAATGGCTAACAAGTCAAAACTGTAAAGGCATAAGAAGTTAAAGTATTTAG ATGTTAATTCATGGAGCTATGATCCTTGAATGCGAAGAGATTGGCTGGCTATTTAGTTGTTTCCATGTTTTCCAAAGACA GTTCCTCATATAGGAATCTGTTTTCCTGGGTTTGCCATGCCCATGACTTGTATGGTTATTTCAACTTCTCAAGTACTCCA TTTAGGACACTTGGCAAGTTATATATACAGCTTTATTTGTACACAGAGTAGTGTTTAAACCCAAACTAGACACTTTGTAG TTGTGTCAGGTCAACCATTCCTACATGTTCTGTGCCCTTTTGAGAATTTATTTAGAAAGAAAAAAAGTGGCAATTATAAG AATTCACCCAGGACATTCTTATAAGGTGAAGGACTGCCTACCAAGTATGTTATTTTTGCATCTTTGTCTCTAAGTATATA TACTTCTTATATTGTGTGCATTCCATATTATTTAGTTAGTATCAGGGTTGTTAATGGTGGATAGCGTAGCGTAGCGGCAA GCCCAAAAAACGCTATTTCGAGCGCTATTGCGGCGCTATAGCGGCAAATAGCGGACAATAACCGCAAATAGCGGTGAATA GTGGAGTAGCGGTGAACCCCCAGGGCGCTACGCAATAGCGCTATTGCGCCACTGTAGGGCAGTATTAACAAGCCTGGTTA CTATGTTTAGCATAATATATATTTAATATTGACTTAATTGTATGTTTTATGAATCAATTCAATCATGTTAGAAATATAAT TTAATATTTTAGTTTTAATTTAACATATATATTCATAAGATTTGTAAGTTTCATTATTGTATCATTTATTTTATTGAATA TATATGTATGTATAAATTCCAGTTCAACCTCAATTCAAACTGCACTCAAATCTTTAACCTCTTTCTTTACTGGCTCACAG ATTAGTCAAGTTTTAAAATACTGGTACAGAGGCATAGACTAAATTTTTGATGAGTAAATTTCCTATTGTGTTAATTCATA ACTGTTTTTGTTTCCACTACTAGCCTACTCTATTACGTTTTACCTATTGAGTTCTGTATACAGTATAGTTTAGCATCCCT TTTGGATTTTCTTGAATGTTGGGTGAGTACAAGTTTTAAGGTTTTGGTAGGAGGTGAAGAGTGCAAAGTGGTTGGAGGTA TGCTTTTTATTGTTGTACGGTCTGTATTTGGCTAGAGTGAAGTGTATGGTATTTCAGGATATCATATCTATAATCTATAA TTTATGGGAAAGGATTGCCTTGTTGGCTTTTCCTTCACTCTGAACCTGTCTAAACTCTAAACACATGCTTCCATTCAAAC TTCAAAGGATTAATTTGATAGATCTTCCGTGAGTTTGGAGAGCATTGTTAAATTGTGCCAATTACTTTATTTGTTAGCTG TAAAGTTATTATATGTTACATTTTTTTCTTAACCAGAGTTCTCCCCGGGTTGTGTTCTTTCTGTTACCTTTCTATTTTAA TTTTTCCATCATGAACTATAATTTATTGCTTTTCACAAACAGCTTTAAATGTTTGCATTTCATTCATGCTTGTATTTTGT TTTTCTCTTAATCCTAGGCTTCTGCGATTCCCGTTGTTTTGATCGAGAACAGTGGGAGATGCAACAAAAATGATAGTGAT GAAAAGGTCAGAGATTTGCTTCATAGCTTTTCCTTATATCCTCTTTTAGCTCATTTATCTTGCGTAATCTGATTGAGAGG ATGTGTCATGGTGATAGGTTCTTCCAAATGGGATTGCATGGATTTCTAATCTAGTCCAAAAAATCACAGAAGTTGCATTG AACAAAAGTGAGTCTATTCATGTTGATAAGAATTTGATTGAAGGGCCAAATCCAAATCAGACTGGAAAATTATGGATTCC TCTCCTGTATGCATTACAAGTAAGCTTTTGAACTTTGAAGCTTAATCTTGTTTTCTCTTAATGCTGACATAGGAGTTAAA ATATCTTTTTCTTTTCATTTTATTCTTCTTGCCTACAGTATTTCTTTGTGATAAAGCCGATAGAAGGACTGATCCAGCAG GACATTTCAAGTGAGAGTAGGCCTTCATGGGAGATGCGAGATGCAGGTTTACGCAAAAGAGATCAAAGGGATCTCTATTA G
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0653800.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGTCCCAAGTTGTCCGTGAGTGGTCAGGAATCAACACATTTGCACCTGCTACCCAGAACAAGTTGTTTGAGCTTTT GGGGCAACTTAAACAAGAGAATGTGAACTCCTTGACTATACTTGTTATGGGGAAAGGTGGTGTTGGCAAGTCTTCAACTG TCAACTCTATCATTGGGGAAAGAGTTGTTTCAATCAGTCCTTTTCAGTCGGAAGGGCCTAGGCCTGTGATGGTATCGCGA TCAAGGGCAGGTTTTACATTGAACATCATTGACACTCCTGGTCTCATTGAAGGGGGATATATCAATGATATGGCACTTAA TTTGATAAAACGTTTCCTTCTGAACAAGACCATAGATGTTTTGCTTTATGTGGACCGCTTGGATGCATATAGAGTGGACA ACTTGGACAAGTTAGTTGCTAAGGCTATAACTGATAGTTTTGGGAAAGCAATATGGAACAGGGCTATAGTTGCACTCACA CATGCCCAGTTCTCTCCACCTGATGGATTGCCTTATGAGGAATTCTTCTCAAAAAGATCTGAGGCTCTCTTGAAAGTTGT TAGATCAGGTGCCCGGATTAAGAAAGATGCCTCCCAGGCTTCTGCGATTCCCGTTGTTTTGATCGAGAACAGTGGGAGAT GCAACAAAAATGATAGTGATGAAAAGGTTCTTCCAAATGGGATTGCATGGATTTCTAATCTAGTCCAAAAAATCACAGAA GTTGCATTGAACAAAAGTGAGTCTATTCATGTTGATAAGAATTTGATTGAAGGGCCAAATCCAAATCAGACTGGAAAATT ATGGATTCCTCTCCTGTATGCATTACAATATTTCTTTGTGATAAAGCCGATAGAAGGACTGATCCAGCAGGACATTTCAA GTGAGAGTAGGCCTTCATGGGAGATGCGAGATGCAGGTTTACGCAAAAGAGATCAAAGGGATCTCTATTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0653800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASQVVREWSGINTFAPATQNKLFELLGQLKQENVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSR SRAGFTLNIIDTPGLIEGGYINDMALNLIKRFLLNKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKAIWNRAIVALT HAQFSPPDGLPYEEFFSKRSEALLKVVRSGARIKKDASQASAIPVVLIENSGRCNKNDSDEKVLPNGIAWISNLVQKITE VALNKSESIHVDKNLIEGPNPNQTGKLWIPLLYALQYFFVIKPIEGLIQQDISSESRPSWEMRDAGLRKRDQRDLY
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10903:SF125
1 300 300 1.5E-145 –
PANTHER
PTHR10903
1 300 300 1.5E-145 –
PIRSF
PIRSF038134
1 309 309 2.5E-164
IPR005688
TIGRFAM
TIGR00991
1 310 310 6.4E-177
IPR005688
Gene3D
G3DSA:3.40.50.300
2 266 265 3.1E-74 –
CDD
cd01853
7 252 246 2.12803E-136 –
SUPERFAMILY
SSF52540
7 257 251 1.09E-28
IPR027417
ProSiteProfiles
PS51720
35 260 226 66.597
IPR006703
Pfam
PF04548
38 228 191 1.7E-36
IPR006703

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of
GO:0006886
Biological process Intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
Subterm of
Part of
GO:0009707
Cellular component Chloroplast outer membrane The outer, i.e. cytoplasm-facing, lipid bilayer of the chloroplast envelope.
Subterm of
GO:0015450
Molecular function P-P-bond-hydrolysis-driven protein transmembrane transporter activity Primary active carrier-mediated transport of a protein across a membrane, driven by the hydrolysis of the diphosphate bond of inorganic pyrophosphate, ATP, or another nucleoside triphosphate. The transport protein may or may not be transiently phosphorylated, but the substrate is not phosphorylated.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0653800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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