Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0658800 |
| Transcript ID | LotjaGi1g1v0658800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | R3h domain containing protein, putative; TAIR: AT3G56680.1 Single-stranded nucleic acid binding R3H protein; Swiss-Prot: sp|A0JNC2|R3HD2_BOVIN R3H domain-containing protein 2; TrEMBL-Plants: tr|V7CXD9|V7CXD9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0658800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:121950331..121955326) extracted from Lotus japonicus Gifu genome v1.2.
TGGAAATTGATGGTGATGAGATAAATTGTAGAAAAACCGAACCGTACAGAGAAGATAATGCGGTGACCCTTGCGCTGTTT GTTCTTTCTCTTTATTACCTGTTCACATTGAACAACGAAGAAATTAAGAATTGGAGACAATAATATTTATTTATTATTGT CTCCAATTTTTCTTCAAAAAAGTGTTGTGTTGTGTTGTGTTGATTTGGGTTGGGTTTTTCTACCTTCCCTCTCTCTCTAT CTCTATGCTTATAAGAAGACAACACAATTCCTTTTCCTTCTTCTCTTCCTCCTCTTGTTCTTCTTCTTCCTCTTCCGATT GAGGGAAGAAGGAACAAGAATTTTATTATTATTATTTTTAATTATTATATAAATTAGTTTTTGTATTTTTTGTTATTAAT TCTTACCCTTTCTGAGTGAAACAACACAACCCCATGGATTCTTCATCATCATCATCATCATCATCAACCTGTGTCCCCAA CGATGCTGCAGCTTCTGGGTTCAAAGACAAGGAGTCAATGGTTGACCCTTTCTTGGTCGAGGCTCTCCAGAACCCTCGTC ATCGTCTCACCAGTTAGTCTCTTATCAACTCTCTCTGTGTGTTTCTGTGTTGGATTTTGAACTCTTTGTTTGTGGGGTGG GGGTGATTTTGCTAATTTCATGTTTCTGCTTCATGGGTATGCTTCAAAATTGCTGCTTGAGCTAGGTTTAGATTTGGGCA TTTTTTCAATGATTGATTTTTGTTGCATGGATTTTGTGTGCATGGTTTGGATATAAAAGGGATTTTTTTTCCAGATAAGG TTAAATTATGTCAGATCTGGAATTGTTGTGGTTATGTCCTGTGTTATTGTGGTGAATTTGGGATTGAGACTCTGAATTTG ATGTGTAATGTTGGTGCTGTTCTGTGGGATTGGGAATGAAATAACCTAAGCTAGATGGTAATTGGGAATTTGGGGGTGCT GGGTTCCAATTTGGCAAAATTTCTGTTCATTTGACTTGCTGAATCTAACAACATCGTCTTTTAAAGGATAAAAGTAGGCC AATAGGCTATGAATGTTTCTGCCATGTAAAATTTCAAAGGATTGAATTGGTATGACAAAAGGAAGCGCCATGATTTCAAA AATTGAATTCTGTGTGAGTGTGTACCCTTTGTTATGCTTTGAATTCTTGAAAACATGGAATTGGGGGTATTTTTAATGGC TTAAAAATTAGGGTTGCCTGTGTCTTGAAAGATATTTTGCCGATCCCGTTGCACTTCTTCCGGCAATACGTTGCCTGGAA TTAAGATTTAAGCCACCCTCTGCTGTCATAACCATATTGGTGATAATTTTAAACTTTCAAGTTCCCACTTTGTGTAAGAG ATAAGAAGCAAACTTAAACGAGTCGTCCTAGCAATGCAGGAAGGTGGATTAGGAGTTTATAATCAAATTAATGAGCTATT CTTTGATCATTATGTTCTACATGTGATATTCCCCCATCAGTGTCCTTTTTGACTGAACTTTGGTTTGTTTTTCTTCTATT TTTTTACTAGTATGTTGGTGGAAATCTTGATGTTTTTGTTAATTGTTTTTAACTTTGCTTTTATCTTTAGTTTTGCGGAT GGAGCTGGATATTCAGAGCTTTATGAATAATGCTGATCAGCAGCATTTTGAGTTCCAGCATTTCCCTTCTTCCTATCTCC GACTGGCTGCACATCGTGTTGCTCAACACTATGGTATGCAAACAATGGTTCAGGATTGTGGCTTAGATGGCCAGGGAAGT AAAATTCTGGTGAGGAAGTTACCGGAAAGCAAATATCCTGCAGTTTGTTTATCTGAAATACCTGCCAAACAGGTGGAAAA TGATAAATGTTTCCAGAAAAAAATTGTAATTAGACCTAGGCCTGGTAAAGCTGGTTTGAATGATGGCAATGGTTCTGGGG TGAAAGGAAACCATCTGAGGAGTGTGGAAGAGAGGAAGGAAGAATATGATCGGGCACGAGCACGTATCTTTAGTGGCTCT AGAAGCTCCGATTCAGGTGATACCTTATCTGTGGTCCCCATGGATGGGCAAAGTTCTTTTATGAGCAGGGATGAGTATGA GACTAGAAAAAACCCCATGGCTGATTCAGAAAGAATCATGAGTGTCAAGGATGCTAATGCTACTCGAGTTGCCATTTTCA GAGACAGGGAAAAGGACCGAAGTGATCCAGATTATGACCGCAGCTATGGAAGGTGAGTTCTATCACTGTACTCTGAATTT AATGCCATAACTACAAATACTCTATTATTTTGCCATTTTGCTGGGCTACACTTAGAAAACTGTTATGTTTGCATTAGTAA ATATAAAAGCTATCTATGTGATAGAGACAGACACAGAGAGGGGGTGAGCTAAGAATGGCATTTCTGTTATTTGGCTGGCA CATTCAATGAAACTCTGGATTCTAGAATTTATTTAACTTGTGATGTGACATTTAGAGGTTTCTTCCACTTTTTATCCTCC AATTTTTGTTTTGGTTATTTTTTACTTTTTGCGTTTTTGCACTGCATTAACTATTAACATAATAGTCGGCTTACTTATGA AGTTGTATTATGTTTTTTAATGCAGGTATGCTAGGAGTATGTCAATGCCTGCCGTTAACTTGGTGCCTTTTAATGTGCAA ATTACCCAACCTTCATTTGCTCAATATGACACTACTTTCAATCAGTTGGTTCAGATGCCACCAACTCAGGCTTCACTTGG CTATATACCTCCTTCAAGTCCGATCATGAGCCCTTTCTGTAATGGGGGATTGAATCAGACACCTAGGGATCCTGCTTACC TACAGTGGCCAAGTCCTACTATAATGTATGCACATTCATATGACCAATTTAGACATGCTGTTTACCAGGTAAACCTCATT TTATTTACTTTAACTTTGTTTCCCTGTTCAATTTGATGAGTGACTTCTGTACTTGCTTCAAAATTCCAAGTTCGGCTTAA TTTAATTATATAAATAAATAATGTACTAGGTTTCATGGGTGATGCCTCTTGATTATTTAAAATGGCTTTTGGTATTGATT TGCCTCTTGCCACACAATGTGCAGAGATTTGGATTGTTTGGCCACTCCCCCCCCCCCAAACTTGTAGTACTCAGATTGTT TGGGGAGCGTAGTTATTCAGTCACAATTTGAATTGCCAAGTTAAATTTGGAATTTGAATCGTGAATTGGAAATTGTAAAA TCCATAAGCACATTATAAGATAGTTAAAATTGTATAATTGATGTTAAGTGCTTGATGTATAGTGTGTTTGCTTGTGAACC ATAGAACACACCAAAATCGCGAAGTTTGTTTAACACTACTTATAGTAGCGTCTGGGTCTTACATGATTATAAGGTCAACA CACTATTCCCAAACATGCATGTAGAACTTGGGAATTGCTGAATAGCTTGACCATAAGTTTCAAAAAACAAATTCTAACTT ACATGTCAAAAGTCAATTTAAATAGAGCAAAAAGTACAGCCAAATTAGAGTGAGCAAGTAATCATGTGAAGCCCAGCCCC AATGGGAGCAAGTGATTGAGTGGGGCTGTGTGAAGCTCCACTCAATCATGTGAAGCCTAAGAATGAAAACAAAGCAAATG AAGTAACTAAATGTGGAATCAATAGTGCTTCTCTTCATTTATCAATTTAAACTTATTTGATATTGTTCAATCTATGTAGC TGATTCCATCTAATGGAGAAGACTTTGATTGTCATTGTTGTTGACTTTCAATTTATATAATGAGAATTGGTGAAAGGAAA GTAAGAAATAAGTGAAATAATTTTTTTGTTGATTCTTGTTATTCATATTGGTGATACGAATCTCATCGATTCATACATGT ATCACGTGTTTCAAAATCATCTATGATTGGCATGATATGAATTGTCAGATTTGTGACTAGTCTTGAAATGTACGATTTGG ATTGTGAATGGTTGAATTCTGAATTGTCAGCTTTTACAGATTTCCCCCCCTCAAAGTGTATTTTGCTTCAATAGATTTTC CTGATATGTGATGTGTGTTGAGTAGGTTCATGAATTTGTCCTACTTTACTTTGTTTGAATTCTACTCCCAGACAAGGATT GAGGAATCTTTACCTTTGTGTTTCCACTATATCTAATTTTTTCCTTGTCCCATTATCATGATTCTCATATACTTTTTGCT TCTTTTCAGGCTCCATTTGGTCAACAGCCCTTGAGCTTTGACTATTCACAGAACTACTAGATGATGGCATTTAGGGGAGG GAGGAGGAAGATTGGATTTGGATGCAGATCTATGTTAGCTTTTTAGATGTTTCTTTAGATTCATTTTCAGTACTTCTTCA TAGACCCTTGTTTCTGTTATTGTAGTGAACCTTGGTTCAGTTTTGATGGTGTTATAGAAAATTATTGGGTACTTTCAATA TGACAATTTATAAACTAGTGAATTGTAGTGGATGACTCTGAATTTAGGAACATATAATATGATAATGTCTCTGTTGGTTT TTTAAATATGGCTATGTATAATGTTAGGGGGGCACATAAGTGCTTGTTTTACGTCTATGCTAAGTAGCGTTTATAATATT CCTTTGTAGGAATCTTAAGCTGAAAGGATAAGCATACCAGCTGGTGGCAATTAAAAAATTGGTAGATCAATTTAATATTG ATCAACCCATCTTACAATTTGGATCTTTAAAAATAAAAAAGTATTGAGAATTCTTGGTCAGAAGCAAGATTGTTTCTTTT GCGATGGTGACTTGAACTGGTTCAAATGGTGAATTATTAGCTCTTAAAATCATTTTGTAATATCTCATCTAAACTACTAA GCATGATTGATGAAAAGGGATAAGAGTTATAATAAAGAATTATAGTGGAATTTTATTATTTCCCTCGACATTCCAGGTTG GACTTCAATTCATTAATTATTATTATTTTTGCAAATATTGTTGAAAAGATCAATTAAGGATGATTACATTAACAAAATTG GCAGTTACAACTTCTAATTTTTTATAAACGTTCGGA
CDS sequence (LotjaGi1g1v0658800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTCTTCATCATCATCATCATCATCATCAACCTGTGTCCCCAACGATGCTGCAGCTTCTGGGTTCAAAGACAAGGA GTCAATGGTTGACCCTTTCTTGGTCGAGGCTCTCCAGAACCCTCGTCATCGTCTCACCATTTTGCGGATGGAGCTGGATA TTCAGAGCTTTATGAATAATGCTGATCAGCAGCATTTTGAGTTCCAGCATTTCCCTTCTTCCTATCTCCGACTGGCTGCA CATCGTGTTGCTCAACACTATGGTATGCAAACAATGGTTCAGGATTGTGGCTTAGATGGCCAGGGAAGTAAAATTCTGGT GAGGAAGTTACCGGAAAGCAAATATCCTGCAGTTTGTTTATCTGAAATACCTGCCAAACAGGTGGAAAATGATAAATGTT TCCAGAAAAAAATTGTAATTAGACCTAGGCCTGGTAAAGCTGGTTTGAATGATGGCAATGGTTCTGGGGTGAAAGGAAAC CATCTGAGGAGTGTGGAAGAGAGGAAGGAAGAATATGATCGGGCACGAGCACGTATCTTTAGTGGCTCTAGAAGCTCCGA TTCAGGTGATACCTTATCTGTGGTCCCCATGGATGGGCAAAGTTCTTTTATGAGCAGGGATGAGTATGAGACTAGAAAAA ACCCCATGGCTGATTCAGAAAGAATCATGAGTGTCAAGGATGCTAATGCTACTCGAGTTGCCATTTTCAGAGACAGGGAA AAGGACCGAAGTGATCCAGATTATGACCGCAGCTATGGAAGGTATGCTAGGAGTATGTCAATGCCTGCCGTTAACTTGGT GCCTTTTAATGTGCAAATTACCCAACCTTCATTTGCTCAATATGACACTACTTTCAATCAGTTGGTTCAGATGCCACCAA CTCAGGCTTCACTTGGCTATATACCTCCTTCAAGTCCGATCATGAGCCCTTTCTGTAATGGGGGATTGAATCAGACACCT AGGGATCCTGCTTACCTACAGTGGCCAAGTCCTACTATAATGTATGCACATTCATATGACCAATTTAGACATGCTGTTTA CCAGGCTCCATTTGGTCAACAGCCCTTGAGCTTTGACTATTCACAGAACTACTAG
Protein sequence (LotjaGi1g1v0658800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSSSSSSSSSTCVPNDAAASGFKDKESMVDPFLVEALQNPRHRLTILRMELDIQSFMNNADQQHFEFQHFPSSYLRLAA HRVAQHYGMQTMVQDCGLDGQGSKILVRKLPESKYPAVCLSEIPAKQVENDKCFQKKIVIRPRPGKAGLNDGNGSGVKGN HLRSVEERKEEYDRARARIFSGSRSSDSGDTLSVVPMDGQSSFMSRDEYETRKNPMADSERIMSVKDANATRVAIFRDRE KDRSDPDYDRSYGRYARSMSMPAVNLVPFNVQITQPSFAQYDTTFNQLVQMPPTQASLGYIPPSSPIMSPFCNGGLNQTP RDPAYLQWPSPTIMYAHSYDQFRHAVYQAPFGQQPLSFDYSQNY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 11 | 363 | 353 | 1.5E-167 | – | |
| PANTHER | 11 | 363 | 353 | 1.5E-167 | – | |
| Gene3D | 17 | 144 | 128 | 7.9E-36 | ||
| SUPERFAMILY | 19 | 134 | 116 | 1.57E-27 | ||
| SMART | 28 | 110 | 83 | 1.2E-10 | ||
| CDD | 43 | 109 | 67 | 8.10832E-17 | – | |
| ProSiteProfiles | 44 | 111 | 68 | 9.34 | ||
| Pfam | 46 | 97 | 52 | 2.1E-12 | ||
| ProSiteProfiles | 114 | 184 | 71 | 11.579 | ||
| Pfam | 135 | 183 | 49 | 1.8E-9 | ||
| MobiDBLite | 144 | 168 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0658800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…