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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0660600 |
| Transcript ID | LotjaGi1g1v0660600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription elongation factor (TFIIS) family protein; TAIR: AT5G05140.1 Transcription elongation factor (TFIIS) family protein; Swiss-Prot: sp|Q9FHK9|MD26B_ARATH Probable mediator of RNA polymerase II transcription subunit 26b; TrEMBL-Plants: tr|A0A1J7HRT6|A0A1J7HRT6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0660600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:122075457..122079990) extracted from Lotus japonicus Gifu genome v1.2.
GAAAAAGAGTGCAAAGAGAACACACACACCATCATGGCATCATCACTCTCTTCTATTTTTCTTCCTTTTATTTGCTGATT TTTAACAAAGTCAAACACAGCCAAAAGAGACCACTATTTGCAACACCTTCAATTCCCCTTCTCTTCTCTCTCCTTCTTTC AAGTTTTCAAGGAGAGTGGTTTTGGGAACATCAAGAACCAAGTTTTCATAGGCACCTGGTATTACTACTATTTGCCTGAA AAGTGCAACATTGCTTAGACATTCAAGAAACTACTACAACAAACTGAATAGGTAGATAGGTTATTGAGATAGCAAAGATT GTTGAGACTTTTCTTCTGGTTCAATTTTGGGGTGTCCTATTTTCCCTTAAATTTCGCTTCTTTCTATCTGGTTCCCTTTT TTTTACAATTTTTTTGTGTTAGAGAAAGAAAAAAATTGGAGGGAGAAAGGGTTCTTTCTTTCTTCCTTCCCCTGAGGTTT TGGTTCTTCAACGCTAGAATCATCTGAAACAACAACAGAAACAAACGTTGTTTGTTGTTGTTGTTGTAATATGCATACGT GCGTTTCAGTTTTGGTTTCTTTCTTGTTTCTGGTTTCGGTTATTACCAAAACCTCTCTCTGAATTTCATTCATTCATTCC CTTTTGCCGAACATTGATCCAATCAAATCTTGACAAAACAGAGACACCCCATGAAATATAATTAAAAAAAGATAATATAT TTGCAAAGTTTCACCATTGATTGGTTGTTTCTTGATTGATCATCGCTCACCCTTTTCACCGTTCATCATTGCTGTGTTCT TCAGGGATAAAGTGATTCTTTGGTTGACATTGGTTGTTCAAGGACAGTGCCCATGAGACAAAATCCAATTTGGAATCGTG GGTGATTGATAGAATTCATTTTTGCATCTGTTTGTGGATCCAGCTCTTGCTAGATTGATCTGGGTTTGTGGTTTTTTGGG TTACAATCATGAAGTCTGGGTCACTGGATCAGTGGAGGAGTTACTTTCGGTCTGCGAATTCGGACATATTTGATATAATT GATCATGCGATCATTGTGGCTGCTTCTGATTGCCCCAAGGAGTTCAGATTGAGAAGGGATTGGATTGCAGAGAGGCTCTT CTCTTGCAAGTTGACTCGTTGTTTGGGGTGTGATCGGGTGGAGTTAGCTGTTGCTGGTGATGGTGGTGAAGATGATGATG ATCATGATGATGGAGGTTGTAAGATTGAAGCTGGGGCAAGCAAAGAGAGCAAGGCTAATGATGCTAGTGGAGATGATCAT GGAGAGATGAACATGAACCCGGATAGCATTTATAGCTTTGGTGAAGCTGAGGCTTTGACTGATGAGATTGAAGAAGAGTC TCAGTATCTTGAAGAGGTTTTGAGGATCAAAGAACTTCTGCTTAGCTCTGAAGAAGCGGTATATTATCTCAATCTTTTCT TTTCTATTTCTTTCTTCTTTGAATACTACAACAATCCTTGCTTATTGGAATAGCAATTTAATTGGATGTTTGATGAGATT TTGGGAAGGATAGGTTTGTGACTTTATGTGGTGCTTTTCAATGGGTGGCATTTGAGTTTTTCTTTGAAGGATGAGTTCTT CTGTGTCCTATGGTTCCTAATTCATGCTTTGTTTCATGTTCTAACAGAGTGACTCTGTGATATTTGATTCACTGAGGAGA CTTCAGCTGATGGAACTCACTGTGGATCGTTTAAAGGTTTGAATTGAATCATTCCTTGTAACTGATTCCATGTACCTTCC ATGCTTTTGGGCAATTTGTTTGCCTTTTGCAGTGCCCTCTTTAGCTAGTCCTCTAACTTTCAGAATTGAACTTTGCCAGG CAACTGAGATTGGAAAGGCTGTCAATCCTCTCAGGAAACATGGATCACAGGATATTCGTCAACTTGCTCGGACTCTTATC ATGTATGAATCAGTTTGCCCTTGATAGTTTTTTCATCTATATATCTTTGCTTTGTCTCATAGAAGATAAATGAGCCTGTT TATCTTCTGTATACATGGTCCAAAGAAAAGGCTTGTTACCAGCTGTTTTAGTTCTAATTAGTGGTTGGTATTCTTGTATT GTGTGTGCAAATAAAGGTCCGCACAATTCACTGAACATCTATGATTGACTTTCATCATGTCATATAATTTACCAAGATTA ACTATCCTCAACTAATTAGACTGTTTTTTTGCTCCATGATCATGGTTTTCAGTTATTAGATTTAGTTAGTCCAGACCTCT TTCGTAGTTAATCATGTGTCCTTGATGCTCAAATGTAATGCTTATTTAACTTAGTTTAGGACCTTTAAATAGGTGAATGT CTTACGGGCAATTTTGGTTCAGTATAAACCATGCTTTTCAGAGCATATCTCCTCTGCTTGAATGTCAGCTATTATTGTTT TCGTTCGTATTAATGTACCAGTTGAAATGCTGAATCTGTTTAATTTGGTTCTAACCTTGTATGCTAAACTTTTCTTTTTC AACTTTGTAGTGGTTGGAAAGAAATGGTAGATGAGTGGGTCAATGCTACAACAACAACAGTTATTGCAGGTAGAAAAGTT TTCTCTGGCTTCTTGTGGTACCAATCATGATAAGTTTGCTGCTGTTTTTATCTGTTTTTAAAATTAATTGACTTTGCTGA ACGTTTGTAGCTTCAGAAGGTACACCAGATTCAGTGAATCCATCTGTTGTTGATGACGATGAAGAAGAAGGACTTCCATC ACCTCCTTTGGATGAAGGGGCCTTCTTTGTTACTCAAGCTGGTTCAATGGAACTCTCACAGGTATTTGCTTGTCCTTTCA CACTTTATCAAACTTACTTTTTGTGCATGTTTTGATATTTAGAAACTGACTTCTTGTCGTTTGTTGGGTGTCATATTATC TTGATGCTGTAAAGTTCTTTGATGGCATGGATGATGATGGAAGTGAGTTGACTTAACAATTTCTTATACTTTGTCTTCCT AGCTTTCGCTGTCCGGTTCTGTATTTGAATTCCCCGCATCTTAGATTGACGGTTGTGAATGGGGAATGTTTTTTCAGATC CTCGACAAAGTGGGCAATTCAACAAGAACCGTGAAAATGGCCGAAAGCCGGCTATGGACAATCAAGTTGTAGAAAAGAGG AAAGTTCAAGCTTCCAATGAAACAGCCTTCACATTCACTGCAAAGGACACGAAGAGTCAGCAAGCGAAGAAAAATGAGGC TTCTGTGAGGTTAAATAAACCAGTAACCGCTGATTCGGGCCCTGGCAGACCACCAAAATCAAATATGCAGAGAAAAGCCA GCGATGAGCCAAAGATGGCAGTGCAGCAAAAAATAGAGAACAATACAATCACAAGGAGGCCTCCCATTGTTCAGCAAAAT GTATGGAAAACCCTCTTTGTGCATCAAATTTTTAGGCTTATGAGGTCTCTCTAACATCTAATTTCTTCTCTTTCAGAAAT CTAAATGTTCAGATGATGCTGCGAAGCTAGAAGCCACTAAGAGGAAACTTCAAGAGCGCTATCAACAAGCTGAAAATGGT TAGTCATTCCTTTTTCAAAATCTATGTCTTTACCCCATGTTCTTATTTCTGCATTCCTAATGAATCTTCAAAGTTAATTC TCTTTCTCTAAGATGTTGGATTTTACTTGTGGACTTTTGGAACTTAGAGCTTTGGACACTAAATTTGTAAAACACATTGT TTTTGTTGAACTCATAGCTAATTGATGAAAGTGCCATACCATTCTTATTTGCAGCTAAGAGGCAGAGAACTATACAAGTT ATGGAATTGAATGATCTTCCCAAGCAAGCGATTGCACACCGGAATCCTCATTTCAAATCTGGAAATCATAGGCAATGGGG ACGAAAATAGAGTTGTTCATTCGGGAAGACACGAAGACTTTGCAACCTTTCTAAGCTTCTCCTCTTCACAATGTTGTAGG AAGAAGGGTGATAACTGCTATTGGATTGAAAATTTATGACCCCCTTACCCTAGGAAAATAACAAATCCATTCAACATTGT TTCTTGGATTGAAGAGCTATTTTGATTGACAGGGAAGTAAATTGAAAACTGTTTATTTCCTAAAATAAGATATCGAGTAC ATAGGAATTTTTGTTAATCCAAGATTGGATTTGGAGAGGATCTTGACATGTAACTCAACCTCGGACTTGGAATGATTGTT GATAGAGATCTCCATTGTTTCAGACTTTCAGTACATGTTCTTTTTGTTACATATACTGATACATACTTGGGCCTCATATA ACTTAGTATGTGCATGTGTCACTATCTTGATGGCCTGTTGTATAATCCTTGATTATGTAATCACGTTTATATCAATAAGA ATTATCCACAAAAGCATGGAATTGTTCCACTATCAAGTTTTATGTTATACCATATAGTTACTTGTAATATTTATGTTACT AATATAATCATCTTGTGGTTTAATAAAGATTATTTCACTGCAGTATTTGTTGACTTTGGAATTTATGGAACAAATTCAGT GTGTTTGGATATTAGTTAAATGTAATATGAATGAATTTTCAATTCAATTTGTAG
CDS sequence (LotjaGi1g1v0660600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGTCTGGGTCACTGGATCAGTGGAGGAGTTACTTTCGGTCTGCGAATTCGGACATATTTGATATAATTGATCATGC GATCATTGTGGCTGCTTCTGATTGCCCCAAGGAGTTCAGATTGAGAAGGGATTGGATTGCAGAGAGGCTCTTCTCTTGCA AGTTGACTCGTTGTTTGGGGTGTGATCGGGTGGAGTTAGCTGTTGCTGGTGATGGTGGTGAAGATGATGATGATCATGAT GATGGAGGTTGTAAGATTGAAGCTGGGGCAAGCAAAGAGAGCAAGGCTAATGATGCTAGTGGAGATGATCATGGAGAGAT GAACATGAACCCGGATAGCATTTATAGCTTTGGTGAAGCTGAGGCTTTGACTGATGAGATTGAAGAAGAGTCTCAGTATC TTGAAGAGGTTTTGAGGATCAAAGAACTTCTGCTTAGCTCTGAAGAAGCGAGTGACTCTGTGATATTTGATTCACTGAGG AGACTTCAGCTGATGGAACTCACTGTGGATCGTTTAAAGGCAACTGAGATTGGAAAGGCTGTCAATCCTCTCAGGAAACA TGGATCACAGGATATTCGTCAACTTGCTCGGACTCTTATCATTGGTTGGAAAGAAATGGTAGATGAGTGGGTCAATGCTA CAACAACAACAGTTATTGCAGCTTCAGAAGGTACACCAGATTCAGTGAATCCATCTGTTGTTGATGACGATGAAGAAGAA GGACTTCCATCACCTCCTTTGGATGAAGGGGCCTTCTTTGTTACTCAAGCTGGTTCAATGGAACTCTCACAGTTCTTTGA TGGCATGGATGATGATGGAAATCCTCGACAAAGTGGGCAATTCAACAAGAACCGTGAAAATGGCCGAAAGCCGGCTATGG ACAATCAAGTTGTAGAAAAGAGGAAAGTTCAAGCTTCCAATGAAACAGCCTTCACATTCACTGCAAAGGACACGAAGAGT CAGCAAGCGAAGAAAAATGAGGCTTCTGTGAGGTTAAATAAACCAGTAACCGCTGATTCGGGCCCTGGCAGACCACCAAA ATCAAATATGCAGAGAAAAGCCAGCGATGAGCCAAAGATGGCAGTGCAGCAAAAAATAGAGAACAATACAATCACAAGGA GGCCTCCCATTGTTCAGCAAAATAAATCTAAATGTTCAGATGATGCTGCGAAGCTAGAAGCCACTAAGAGGAAACTTCAA GAGCGCTATCAACAAGCTGAAAATGCTAAGAGGCAGAGAACTATACAAGTTATGGAATTGAATGATCTTCCCAAGCAAGC GATTGCACACCGGAATCCTCATTTCAAATCTGGAAATCATAGGCAATGGGGACGAAAATAG
Protein sequence (LotjaGi1g1v0660600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKSGSLDQWRSYFRSANSDIFDIIDHAIIVAASDCPKEFRLRRDWIAERLFSCKLTRCLGCDRVELAVAGDGGEDDDDHD DGGCKIEAGASKESKANDASGDDHGEMNMNPDSIYSFGEAEALTDEIEEESQYLEEVLRIKELLLSSEEASDSVIFDSLR RLQLMELTVDRLKATEIGKAVNPLRKHGSQDIRQLARTLIIGWKEMVDEWVNATTTTVIAASEGTPDSVNPSVVDDDEEE GLPSPPLDEGAFFVTQAGSMELSQFFDGMDDDGNPRQSGQFNKNRENGRKPAMDNQVVEKRKVQASNETAFTFTAKDTKS QQAKKNEASVRLNKPVTADSGPGRPPKSNMQRKASDEPKMAVQQKIENNTITRRPPIVQQNKSKCSDDAAKLEATKRKLQ ERYQQAENAKRQRTIQVMELNDLPKQAIAHRNPHFKSGNHRQWGRK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 444 | 444 | 4.9E-175 | – | |
| PANTHER | 1 | 444 | 444 | 4.9E-175 | – | |
| MobiDBLite | 70 | 108 | 39 | - | – | |
| MobiDBLite | 82 | 102 | 21 | - | – | |
| Gene3D | 126 | 218 | 93 | 2.2E-20 | ||
| SUPERFAMILY | 133 | 215 | 83 | 3.79E-19 | ||
| SMART | 134 | 209 | 76 | 4.3E-13 | ||
| CDD | 135 | 208 | 74 | 9.05628E-19 | – | |
| ProSiteProfiles | 135 | 210 | 76 | 21.627 | ||
| Pfam | 159 | 207 | 49 | 5.6E-10 | ||
| MobiDBLite | 222 | 247 | 26 | - | – | |
| MobiDBLite | 264 | 388 | 125 | - | – | |
| MobiDBLite | 300 | 319 | 20 | - | – | |
| MobiDBLite | 362 | 385 | 24 | - | – | |
| Coils | 382 | 416 | 35 | - | – | |
| MobiDBLite | 425 | 446 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
Expression pattern of LotjaGi1g1v0660600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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