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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0663400 |
| Transcript ID | LotjaGi1g1v0663400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G80270.1 PENTATRICOPEPTIDE REPEAT 596; Swiss-Prot: sp|Q9C977|PP135_ARATH Pentatricopeptide repeat-containing protein At1g80270, mitochondrial; TrEMBL-Plants: tr|A0A1J7HLE9|A0A1J7HLE9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0663400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:122474235..122478065) extracted from Lotus japonicus Gifu genome v1.2.
GCATTTATGGGTTAAAAAAAAAGAGGTGGGGCGCGGAGCCCCATAGGGGGCCCCAAACCCAACTCCCATAATGCATTGAC AAAAAAAAGCGAAGGCAGAGAGAAAGGGTTTAAGCAAACCAAAACTAGGGTTCAAGCAAACGCTTCCACCACCACCACCA CCACCACCACCACCACTGTTTTCCGATCATGTTGGCTCTTCGTCGAGCTTCTCTCCCTCTCAGGTTCGCTCTCTCTTCAT CACTCTCCTCCATTTCTCATTTCCATTTCTACAGAGAGCGAGAGATTTTTGATTTTTGATTTTTGATTTTTGATTTTTGT TTGTGTAGGAAAAGAGGGTTTAATGTTAGGGTTTCATGTGCCAAATTAACATCAACCACTGTAGAAGACAAAGCTGAGTC CTATCCAACGATTCATGCTAGTGTTGGTGTGTTTCATCCTTCACTGAATGCTAGTTTCCATTCTTTGAAATTCAATGTGT GTGGTTCACGTCACCTTTCGTCGAATGCCGGTGCGAGTAGCACCAAAGACGACGAGGATGATGATGAGTTTTCTGAACTG GAGAGTCCGGTTGCTGCTGGTGGGGATGAGGATGATCTGTTGAGTTCTGATAATGAATCGGAGGGTGGTGAGGAACCGCA CGATGAGCTGGAGTTGTCTGATGGCGAGACTGGTGAACCGGCTGAGAAGAAGAAAGCGTACCGGAAAAGGATTGAGTCGG AACTGTGTAATAAGATTATGGATGCTCCGGGGATGGCCATTCATACGGCTCTGGATAAGTGGGTTGAAGAAGGGAAAGAA ATGAGCAGACAAGAGATCTCTCAGGCCATATTTCTTCTTCGCAAGCGTAATATGTACGGGAGAGCTTTGCAGGTAATTGA TCAAAAAAAATTATTTGCTTTTGATTTATTCATTTTAATATTTGAAGTTTTGATGCTGAGAAACTAACCCATGTGCTAAT AATTTTCATTAGATATCTGATGTTTGTTTGTTATTGTACTTTGTGGTGATATATTTCTCTGAAACTCTCCATAGGAGCAA TGTCCTGCATGTGATGGAAAGGAGGGAGATAGAATATGTTTAACTATTAGGTCTTTGAAGAATTGTAGTGTTCTGTTGAT ATAAAACACTAATCATGGTTAAGTGCAAGTTTTCATCTAGTTCTAGGCGTGACCCCGGCCCAAAATATGGTATTGACCTC CTAACACAATAATCTAACACTCCCCTCTAGATAAACCTGACTAAGATCTGTTACAATTAAGCAAATTGAATAAAAAAACA CAACAACCTACTCATAAACAGGGCCAAACAAGGCAACTGGGGCAAAGAGTGCCAGTTGACCTCACTGGTGGTTAAAAACA GTTGATGATCTCAGCATTAGAAAATTCTGGCTTGAAGATGGTTTAACTTTCCCTCAGTTGCCACAAGGTGTGGAGCAGGG TCAACAGATGAGCAATAATTCCATCTTATTGAAGGGTTTGGTCAGCTGGTCGGAGGGTTGTGAGTTCAGTAGCGGGGACA TGGGGTAGGATCATTGGAAGGGGATCAATCATGGACAGCGGTGAATAGGAACAACTGTAAAAAACATCACCAACGGTGGG GGAAAGCAGGAACAGCCACAAGAACAGGGCGTGCCAGAATAAAAAACTGGAGGGGTGTTGGTGAGTCTGCTACTGGAACA AAGACACAGCAAGGAAAGGAGAAAGAAGGAGGCGAAGCGATGAATGCATATCCGGTGCCTGAAACAATAAACACAGCCAC CAGAAAGGATTACAGATTACTCCCTTTTCTCATAGTGATGGGATTTAGGTACTTGGATTTGGATCAAACATAAACAGTGC TAGTTCCGTATGTTGCATTTTGCTGAATTTTATTATTTATATTCTGATTGTGGCTGCATAGGAGGGAGGAGCATTCATAT ATTGAATGTTGGAAATTGTGGGCAATTGTGGTTTATGTGGCCAAGATAATGGTTGTTATATTTACTTATCTTTTTCCAAT TTTATGAGAAGATGTTTTGTTGTCCAATTTTATTTACATTTTTATTTTGGTTGCTTTTGTAGCTCTCAGAGTGGCTCGAG TCAAAAAAGCAGATTGAATTTATTGAAAGGGATTATGCTTCTCGAGTTGATTTAATTGCCAAAATTCATGGCCTACAGAA GGCAGAGGCTTACATTGAGACTATTCCAGAGTCTCTTAGAGGGGAGGTAATATACCGAACTTTATTGGCTAACTGTGTCC AAAAGAACAATGTGAAGAAAGCAGAGGAAATTTTTAATAAAATGAAGGATTTGGATTTTCCTCTTACGGCATTTGCGTGC AATCAGTTGCTTCTTCTATATAAGAAGAATGACAAGAGGAAAATAGCTGATGTGTTATTGTTGATGGAAAATGAGAATGT CAAACCTTCTCCACTTACTTATAACATCTTAATAGATGTAAAAGGCCTGTCCAAAGATATTGCTGGAATGGATCAAATTG TTGACAAAATGAAGGAGGAAGGCCTTGAACTAGACGTAAAAACAAAGGCTGTTTTGGTTGGGCATTACATCTCATTTGGG CTTGAAGATAAAGCTGAAGCTTTATTGAAGGAGATGGAAGGTGAGAACTTGAAACAAAATCGGTGGGTATGCCGAACTTT GCTTCCCCTCTATGCAAACCTGGGGAAGGCGGATGATGTGGGAAGGATTTGGAAGGTCTGTGTGACAAACCCTTACGTTG AGGAGTGCTTGGCTGCAATTGAAGCTTGGGGGAAGTTGAATAAAATCGACGAGGCAGAGGCAGCTTTTGAGATGTTGTCA GGAAAGACGGAGCTTTCTTCCAAGAACTGCTCAGCAATGCTGAGGGTTTATGCAAATCATAAGATGCTAATGAAGGGTAA GGATCTTGTTAAGCGAATGGCGGATAGTGGGTGCCGAATAGGTCCATTGACATGGGATGCAATTGTGAAACTTTATGTCG AGGCTGGGGAAGTGGAGAAGGCAGACTCTATTCTTCAGAAGGCAACTCAGCAGAGCCATGCCAACCAGGTGAAGCCACTA TTTTCTTCCTATATTGCTATCTTGGAGCAGTATTCTAAGAGGGGCGACATCCATAATTCAGAAAAGATTTTCTACAGAAT GAAACAAGCTGGTTATACATCGCGAATAAGGCAGTACCAGGTTCTACTACAGGCCTATATAAAGGCCAAGCTTCCAGCCT ATGGAATTAGAGACAGATTGAAAGGTGATAATATATATCCAAACAGAAATTTGGCCACCTTGTTGGCTCAAGTTGATGGA TTCAGGAAGACTCCTGTTTCTGATTTGCTTGATTGAGAGGTTGTTTCTACTGATAACTAAGCTACTACTGTTGGTTAAAT AGTAGGTTAAGTATATTTCTTTTTGAAGTTTTCTATGCTTGTTTGAAAAACTCTTGGATTTAAGAACAAGTATGCGCATG TTACGGTGTAATCTGTATTTTTCTGTTACATCTCTCGCCATTTGGGTTGAATTGCTAGCTTGTAAAAGAAAATGTGGAAA TTACATATTTCCTTTTCCTCTGATCAGATGTCAGAACATATAAAAAACGATAAATATGGCAAGTGATTTCAAGACAACTA GAAGTGCTATTTTTTGAAATATAACAATTTATGTTTCTTGTACATTATAATTTGATCTTGAATTTAGCATCAAAATGATA TATCTATGAAGATGAAACATTTGGAATGGGGAATGGATCCAAGTTAACCTCACTTTGATACTTTCCATTATGTCAAGGGT TAACAACTACAACCAATTAGTTTGTTGCAAGTTATTTGAACTTGTGTTTCAATTATATATTTACTCATGCG
CDS sequence (LotjaGi1g1v0663400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGGCTCTTCGTCGAGCTTCTCTCCCTCTCAGGAAAAGAGGGTTTAATGTTAGGGTTTCATGTGCCAAATTAACATC AACCACTGTAGAAGACAAAGCTGAGTCCTATCCAACGATTCATGCTAGTGTTGGTGTGTTTCATCCTTCACTGAATGCTA GTTTCCATTCTTTGAAATTCAATGTGTGTGGTTCACGTCACCTTTCGTCGAATGCCGGTGCGAGTAGCACCAAAGACGAC GAGGATGATGATGAGTTTTCTGAACTGGAGAGTCCGGTTGCTGCTGGTGGGGATGAGGATGATCTGTTGAGTTCTGATAA TGAATCGGAGGGTGGTGAGGAACCGCACGATGAGCTGGAGTTGTCTGATGGCGAGACTGGTGAACCGGCTGAGAAGAAGA AAGCGTACCGGAAAAGGATTGAGTCGGAACTGTGTAATAAGATTATGGATGCTCCGGGGATGGCCATTCATACGGCTCTG GATAAGTGGGTTGAAGAAGGGAAAGAAATGAGCAGACAAGAGATCTCTCAGGCCATATTTCTTCTTCGCAAGCGTAATAT GTACGGGAGAGCTTTGCAGCTCTCAGAGTGGCTCGAGTCAAAAAAGCAGATTGAATTTATTGAAAGGGATTATGCTTCTC GAGTTGATTTAATTGCCAAAATTCATGGCCTACAGAAGGCAGAGGCTTACATTGAGACTATTCCAGAGTCTCTTAGAGGG GAGGTAATATACCGAACTTTATTGGCTAACTGTGTCCAAAAGAACAATGTGAAGAAAGCAGAGGAAATTTTTAATAAAAT GAAGGATTTGGATTTTCCTCTTACGGCATTTGCGTGCAATCAGTTGCTTCTTCTATATAAGAAGAATGACAAGAGGAAAA TAGCTGATGTGTTATTGTTGATGGAAAATGAGAATGTCAAACCTTCTCCACTTACTTATAACATCTTAATAGATGTAAAA GGCCTGTCCAAAGATATTGCTGGAATGGATCAAATTGTTGACAAAATGAAGGAGGAAGGCCTTGAACTAGACGTAAAAAC AAAGGCTGTTTTGGTTGGGCATTACATCTCATTTGGGCTTGAAGATAAAGCTGAAGCTTTATTGAAGGAGATGGAAGGTG AGAACTTGAAACAAAATCGGTGGGTATGCCGAACTTTGCTTCCCCTCTATGCAAACCTGGGGAAGGCGGATGATGTGGGA AGGATTTGGAAGGTCTGTGTGACAAACCCTTACGTTGAGGAGTGCTTGGCTGCAATTGAAGCTTGGGGGAAGTTGAATAA AATCGACGAGGCAGAGGCAGCTTTTGAGATGTTGTCAGGAAAGACGGAGCTTTCTTCCAAGAACTGCTCAGCAATGCTGA GGGTTTATGCAAATCATAAGATGCTAATGAAGGGTAAGGATCTTGTTAAGCGAATGGCGGATAGTGGGTGCCGAATAGGT CCATTGACATGGGATGCAATTGTGAAACTTTATGTCGAGGCTGGGGAAGTGGAGAAGGCAGACTCTATTCTTCAGAAGGC AACTCAGCAGAGCCATGCCAACCAGGTGAAGCCACTATTTTCTTCCTATATTGCTATCTTGGAGCAGTATTCTAAGAGGG GCGACATCCATAATTCAGAAAAGATTTTCTACAGAATGAAACAAGCTGGTTATACATCGCGAATAAGGCAGTACCAGGTT CTACTACAGGCCTATATAAAGGCCAAGCTTCCAGCCTATGGAATTAGAGACAGATTGAAAGGTGATAATATATATCCAAA CAGAAATTTGGCCACCTTGTTGGCTCAAGTTGATGGATTCAGGAAGACTCCTGTTTCTGATTTGCTTGATTGA
Protein sequence (LotjaGi1g1v0663400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLALRRASLPLRKRGFNVRVSCAKLTSTTVEDKAESYPTIHASVGVFHPSLNASFHSLKFNVCGSRHLSSNAGASSTKDD EDDDEFSELESPVAAGGDEDDLLSSDNESEGGEEPHDELELSDGETGEPAEKKKAYRKRIESELCNKIMDAPGMAIHTAL DKWVEEGKEMSRQEISQAIFLLRKRNMYGRALQLSEWLESKKQIEFIERDYASRVDLIAKIHGLQKAEAYIETIPESLRG EVIYRTLLANCVQKNNVKKAEEIFNKMKDLDFPLTAFACNQLLLLYKKNDKRKIADVLLLMENENVKPSPLTYNILIDVK GLSKDIAGMDQIVDKMKEEGLELDVKTKAVLVGHYISFGLEDKAEALLKEMEGENLKQNRWVCRTLLPLYANLGKADDVG RIWKVCVTNPYVEECLAAIEAWGKLNKIDEAEAAFEMLSGKTELSSKNCSAMLRVYANHKMLMKGKDLVKRMADSGCRIG PLTWDAIVKLYVEAGEVEKADSILQKATQQSHANQVKPLFSSYIAILEQYSKRGDIHNSEKIFYRMKQAGYTSRIRQYQV LLQAYIKAKLPAYGIRDRLKGDNIYPNRNLATLLAQVDGFRKTPVSDLLD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 23 | 23 | - | – | |
| PANTHER | 50 | 606 | 557 | 2.5E-263 | – | |
| PANTHER | 50 | 606 | 557 | 2.5E-263 | – | |
| MobiDBLite | 69 | 135 | 67 | - | – | |
| MobiDBLite | 101 | 121 | 21 | - | – | |
| Gene3D | 240 | 412 | 173 | 3.2E-27 | ||
| ProSiteProfiles | 240 | 274 | 35 | 8.955 | ||
| TIGRFAM | 242 | 274 | 33 | 3.5E-5 | ||
| Pfam | 267 | 320 | 54 | 3.9E-5 | ||
| ProSiteProfiles | 309 | 343 | 35 | 8.111 | ||
| ProSiteProfiles | 344 | 378 | 35 | 7.388 | ||
| Gene3D | 413 | 604 | 192 | 1.1E-19 | ||
| ProSiteProfiles | 445 | 479 | 35 | 8.1 | ||
| Pfam | 450 | 477 | 28 | 0.12 | ||
| ProSiteProfiles | 480 | 514 | 35 | 7.18 | ||
| Pfam | 515 | 565 | 51 | 0.0021 | ||
| ProSiteProfiles | 519 | 553 | 35 | 8.089 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0663400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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