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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0664400 |
| Transcript ID | LotjaGi1g1v0664400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Endonuclease/exonuclease/phosphatase family protein; Swiss-Prot: sp|P27695|APEX1_HUMAN DNA-(apurinic or apyrimidinic site) lyase; TrEMBL-Plants: tr|A0A061DW40|A0A061DW40_THECC Uncharacterized protein; Found in the gene: LotjaGi1g1v0664400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:122627622..122632871) extracted from Lotus japonicus Gifu genome v1.2.
ATTAAATATAGCTATCCCAAATGAAATACTAAATTTATTTTTATTTGGATGCTCATTTCCAATTTCCCCCTTTTCTGATA TAGGCCTATGGTTACCAAAAAATGTTTTGGGCTGCCCTGTTGAAACAAATGGTCTCTTGAGCCCATTGAAAAGTTGCGGC ATCGTTTTGACGGAGGTTGAAGAGTCCCTTGGTGCTGAGATCATTCCTGAGATTGCAGAGGGCGAAACTAAAGCATTAGT TTTTTCAAGTCCTGCCACTCCCATCATTGTTTGCCCAAATCTAGAGGAAGAGGAAATACTGAAAAGAGCAAAACAAGGTG TGAGCAGAATCAACAAATTGAAATCCCTTGAAAGCCTTGAACTTGACTGTGCGAAACCGGGGCAGGAAAAGAAGAAAAGA GGCAGAAAACCTAAATCCATTGCTGGCTCCTCTATTCTTCGAGAAATATCGGAAGGGGCGGGAGGAGTCGATCCAAATTT TGTCGAGCTCCAAGCATCAGCTGCAAGAAGCGATTCTGGCGTATACTTCACCAGGGCCACAAAGGCTTGGATCCTTGGGA AATCAGTTGGGTTATCTTTCCCTGGAAGTGACGAGGAAGCTATAAAGGGTCTTGCGGAGGAGCTAGAGGAGGACTGTCCA ATTTTCTCAGTCTAGGCTTGATGGGGCGTACGAGAAAATGGTGCTCTTGGAATGTCCGGGGACTTGGAAGTGCAGAGAAA AGAAGAGAAGTGAAGGAGGCTTTGAAGAAAGTGAAATTGGAAATAATTCTGATCCAAGAAACCAAACTGGGAGAGAACAG AGACCGAGTGGGAGAACGTTTTGCCAAATCCCTCAATCTTAACTTTAAGGAAGTCTACGCAAGTGGTTCTGCAGGGGGGT TATTATCCTGCTGGGATCCTAACGTCATAAAAGTCTCGAATTCCATTCAGGATCAAAATTTTATTTTGTTGATTGCCCAA GTACCATTCATGTCCACCCCTGTGATAATTGGCAACGTATATGCTCCAACGGTTGAGGCCCAAAGGAGAACCACTCTTCA GAAGCTGATTGTGGAGGTGAGTAGTCTCGGTTTTGGCTGTTTCCTGGGTGGGGATTTTAATGGAACTCTAAATCCAGGAG AGCGTCGTGGTGGGATTGATGTAATAGACCCATGCTTATCTGAATTTGTGACAGATTTGAATATGATTGATTTCCCATAA ACAAATGCTGATTTCACTTGGTTTAGTTCTCGCCATGGCGGAATCTGGAGCCGCTTGGACAGGTGGCTGATCAGTGAAGA GACTATGAGGGATCTTGATGGGGTTCAACAGTCTGTAGAAAATTGGGGACTTTCAGACCATAGAGCGGTCTCTTTGTCCA TGGGTGATGTGGACTTTGGTCCTAAGCCTTTCAGATTTTATAGCAGCTGGATGTTAGAGGATGATTTTAAATTTCTGGTT GATTCTTGGTGGAACTCACCACTAGTGGCAGGCTGGGCAGGAGCCACGCTTCATGATAAATTAAAATCTCTGAAAAAAGA GATTAAGAGTTGGAAGGGCAGCAGGGCAAATGCAGTGACTGACAGAATAGCTAGCCTTGAGACGGATCTCCAGTCAACTA TGGATCAAATCCTAAGAGATGGTTCCTCAAACTCATTGAGAGCCAAAAGGTTGAAAGTTCTGGATGACCTTTGGAACGCT TTCAGATTGGAGGAATGTAGATGGAGACAGAAATCAAGATCAAGATGGGCTAAAGAAGGGGATAGAAATTCCGCTTTCTT CCATAGACAATGCAAGATCAGAGTGGCCAAACAGAATATTACTAAACTTAGCACAAATGGCTTGGAAATTGAGGATGCAG AAGGTATTAAACAAGCTATTTTCCAGCATTACAAGTCCTTCTTCACCAGCCAAAAAAAGCGTAGACCACGCTTGAGATGT CCAAACATCCAAAGGCTATCTCGCAATGATCAAGCAGATTTAGAAAAGCAGTTCTCCGAGGCAGAAATATGGGACGTGGT TAAATCCTTTGACGGCAATAAAGCCCCAGGGCCTGACGGCTTTAATATGAAATTCTTTCAGGAATTCTGGAGCCTGGTTC GAGTGGATGTTTGAGGATTTCTTCAGTTCTGGTAGGATTTCGAGAGGCATGAATGCTGCCTTTATAACCCTAATCCCCAA GAAGGAGAATGCTTCCTCTCTAAACCACTATAGACCAATAAGCCTAATTAGGAGCTCGTATAAACTCATTGCCAAGGTTC TTGCTACAAGGTTACAAAAAGTGATGCCTAAGCTCCTATCACAGAATCAGTTTGCATTCACCAAAGAAAGACAAATTGCT GACTGTATTCTTCTAGCAAACGAGGTTGCTGATTTCTTGTCCAAGAAAAGTGAAGGGGGTCTAATGCTCAAAGTGGACTT AGCTAAGGCCTATGATCAAGTTGATTGGGAGTTTTTGATCAATATGCTACATGAAATGAATTTTGGAGACAAATGGATAT CCTGGATGAAGTCTTGCATTTCCTCAGCCTCTTTGGCAATCTTAGTCAATGGCTCCCCCACTGACTTCTTCTCCATTGAG AAGGGCCTACGACAGGGAGACCCCTTATCACCATTACTTTTTAATTTATGTTTAAATGGTCTTTCCTGTCTTTTAAATCA GTTTTTGGGAGAGGAAAATTACTGTGGGGTGAGGATTAGTAGAAATCTGACTATAAATCACTTGCTCTTCGCAGATGACA CACTTTTATTCTGTGAAAATAATGAGTTACAGTTGGAAACTTTGTGCAATGTCCTGATTACCTTCCCGTTTGCTTCTGGC TTGAAGGTCAATAATCAAAAATCTGAACTAATTGGGTGTAATGTCCAAACAGTTGAAGTGGAGAGGCTTGCACACTCATT TGGGTGGTCTGTAGGAACCCTACCAATATCCTATCTTGGTGCACCACTTGGTGGTAATCCAAGAAGAATTGTTTTCTGGA ACCCCATGTTGGAAAAGCTGAAATGCAAGACCAGGTCCTACAACTCTAAATTCATGTCACTCAGCGGTAGATTGGTGATC ACAAAATCTGTTCTATGCTCTATACCTCTATTCCTAATGGTTGTTTTCAAAGCACCAAAAGGAGTGATTCTGGAAGTGGA GAAATTATTTCACGCTTTCATTTGGGGTCAAGAGCAGGGGAGGAAGAAGATAAATTGGATTGGTTGGGACCAGATTTGTC TAAATAGAAAAGCAGGTGGTCTTGGTCTCGGGTTTATAGAATGGAGGAATAGGGGACTTCTTTTAAAGTGGGCATGGAGA TTCGGGAGAGAGATAAATAGCTTGTGGAGGTTTTTTGTGATTGAAAGATACAACCTTGACCCTGATTCATTGATATGGCA CATGGCATCAACTACCCCTGCCATGGGGTCCAGAGCAATCCAAGACATTTGGAGAGTGCTAAATGAGGATCACTCACTGT CTGCTGGTTTTAAGGAAAATTTACTGATCTCAATTGGGGATGGCTCGAGAGTAAAATTTTGGAGAGATCCTTGGGTATCA AATGTTGCCCTATGCCATTTGTTCCCTAGACTCTATGCTATGAGTGAAAACAAAGAGGCCAGAATCGCGGAGGTGGGCAC ATATTCTCGAGGTAAATGGGGCTGGTCTCTCACTTTTCGCGGACAATTTTTTGCATGGGAGGAGGAGCTATACCAACAAT TCTTGGCATCTATTAACCACATAATTCCAGCCGCTGTGGGAGGGGACCAATTGATATGGTGTGCCAATCAAACTGGGCTG TTCTCGGTGAAGGAGCTTTGCTACTGGTTGGAGGATCACCTATTCACTCATCAAATGTGGCAAGTTCCTAAATCTATAGC AAAACTCTTACCCCCTAAAGTTGCTTTATTTTTCTGGCAAGCTCAAAATGACAAAATTGCAACAAGAGCCAATTTACTTG CAAGAGGCATTGACTTAAATGGTTCCACCCAGTGCCTATTCTGCAATGCGTTTGATGAATCATGTAATCATATATTTCTG CACTGTCATTCCATTTGGTCTCTGTGGTGTGTGATTGTGAATAGGGAGAGATTTTTATGGGTAATGCCTGCGTCCTTAGC TGATCTCATTCTTGAATGGGATTTTCTTCCAAAAATCTCTGATAAGTCTCTGTGGAGTTTGATCCCTTACGCCTTGTCGT GGTCAATCTGGATTGAAAGGAATAATATCTGCTTTAACCATAAGGCTTTAAATATTTCTGAAATCTGGGATTTTCATCTC CTGCGTATCGGTTGGTGGACTCATGAGTTACTTCGCCAGAATTCTTATAGTATAGACCAGCTGTCCAGAAACTTTGAATC TATCAGGTTTGCTTCAAAACCCTCTTTGTTAAGGGCTGCCAGTTGGGTTACTCCTGATGCAGGTCTAATCAAAATCAATG TGGATGGGGCGGCGAAAGGTTCCCCTGGGAGATGTGGTATTGGTGGGATTCTAAGAAACAATGCAAATGTCATCCTTGGA TTTTTCTCTAAAAGCGTTGGAGAAGGATATGCATTCGAAGCTGAGGTCCTTGCCATCCATGAGGCTCTCTTGTTCTGTGT GCAAAGGCAGCTTAGAAATATAATCATCGAGAGTGATTCCTCCTTAGCTGTTGGGTGGGTCAATAATCGCTGCAATAGAC CATGGAAATTGTTGAACAAACTGAACCAAATTGATCGATGGTTGGTGGAGACAAATTGCTTGAAGGTGAACCACATTTAT AGAGAGGCTAATGGGGAAGCAGATAAACTTGCAAAAAGGGGGGCTGAATATCCAAATGATTTATGGTATTTCAAAGAAAA TTGGTAGTTGCTGCCAGATACTTTCTCTTGAGCTCTGAGACCGTGATGTTCTATTTTACTCCCTAGAGTATTTGTCCTGG TGGGTCTTCCGTGGTTTTTTCAGGGTATATTTTCGGAGCTGTTGTACCTTTTTGTTTGGGGTTAGCTTTGGTTTGAGTAC TCTTTTTCCTCTCCTTGGGTTTTTTTCCCACTAGGTTTTCCCTTGGAGAGGTTTTGATGAGGCTCACTCCATTGCTTTGT TTCCACCCTTAATCTTGGCAACCTTTCTTTGTTTTGTATCTCTTCTACATGAGAGGAATGTTCTCATGGTTCTTTCAGCT ATATCAATAAATTCAACTTCTTTTCTCAAAAAAAAAAAAAAAAACCCTCCAAACTGTGAATATGAATGAACATTTTGTGT ACTTTTGTCCAATATTAATATTAATTCATCACATAAATGACATAATTTTG
CDS sequence (LotjaGi1g1v0664400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGCGTACGAGAAAATGGTGCTCTTGGAATGTCCGGGGACTTGGAAGTGCAGAGAAAAGAAGAGAAGTGAAGGAGGC TTTGAAGAAAGTGAAATTGGAAATAATTCTGATCCAAGAAACCAAACTGGGAGAGAACAGAGACCGAGTGGGAGAACGTT TTGCCAAATCCCTCAATCTTAACTTTAAGGAAGTCTACGCAAGTGGTTCTGCAGGGGGGTTATTATCCTGCTGGGATCCT AACGTCATAAAAGTCTCGAATTCCATTCAGGATCAAAATTTTATTTTGTTGATTGCCCAAGTACCATTCATGTCCACCCC TGTGATAATTGGCAACGTATATGCTCCAACGGTTGAGGCCCAAAGGAGAACCACTCTTCAGAAGCTGATTGTGGAGGTGA GTAGTCTCGGTTTTGGCTGTTTCCTGGGTGGGGATTTTAATGGAACTCTAAATCCAGGAGAGCGTCGTGGTGGGATTGAT GTAATAGACCCATGCTTATCTGAATTTGTGACAGATTTGAATATGATTGATTTCCCATAA
Protein sequence (LotjaGi1g1v0664400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRTRKWCSWNVRGLGSAEKRREVKEALKKVKLEIILIQETKLGENRDRVGERFAKSLNLNFKEVYASGSAGGLLSCWDP NVIKVSNSIQDQNFILLIAQVPFMSTPVIIGNVYAPTVEAQRRTTLQKLIVEVSSLGFGCFLGGDFNGTLNPGERRGGID VIDPCLSEFVTDLNMIDFP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 3 | 179 | 177 | 6.6E-20 | ||
| PANTHER | 8 | 126 | 119 | 2.7E-16 | – | |
| PANTHER | 8 | 126 | 119 | 2.7E-16 | ||
| SUPERFAMILY | 8 | 177 | 170 | 5.18E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nuclease activity | Catalysis of the hydrolysis of ester linkages within nucleic acids. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. |
Expression pattern of LotjaGi1g1v0664400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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