Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
No description is available for this domain.
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nuclease activity | Catalysis of the hydrolysis of ester linkages within nucleic acids. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: exodeoxyribonuclease-like [Glycine max] gi|356508768|ref|XP_003523126.1| | 11 | ||
| – | PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Glycine max] gi|356502118|ref|XP_003519868.1| | 17 | ||
| – | PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Glycine max] gi|356502118|ref|XP_003519868.1| | 11 | ||
| – | PREDICTED: LOW QUALITY PROTEIN: apurinic endonuclease-redox protein-like [Glycine max] gi|356537505|ref|XP_003537267.1| | 21 | ||
| – | DNA-(apurinic or apyrimidinic site) lyase; TAIR: AT3G48425.1 DNAse I-like superfamily protein; Swiss-Prot: sp|Q5XF07|APE1L_ARATH DNA-(apurinic or apyrimidinic site) lyase; TrEMBL-Plants: tr|I1JXF2|I1JXF2_SOYBN DNA-(apurinic or apyrimidinic site) lyase; Found in the gene: LotjaGi1g1v0231200 | 12 | ||
| – | Endonuclease/exonuclease/phosphatase family protein; Swiss-Prot: sp|P27695|APEX1_HUMAN DNA-(apurinic or apyrimidinic site) lyase; TrEMBL-Plants: tr|A0A061DW40|A0A061DW40_THECC Uncharacterized protein; Found in the gene: LotjaGi1g1v0664400 | 6 | ||
| – | Endonuclease/exonuclease/phosphatase family protein; TAIR: AT4G36050.2 endonuclease/exonuclease/phosphatase family protein; Swiss-Prot: sp|P37454|EXOA_BACSU Exodeoxyribonuclease; TrEMBL-Plants: tr|A0A0B2RQP7|A0A0B2RQP7_GLYSO Uncharacterized protein; Found in the gene: LotjaGi2g1v0080500_LC | 6 | ||
| – | Endonuclease/exonuclease/phosphatase family protein; TAIR: AT5G05520.1 Outer membrane OMP85 family protein; Swiss-Prot: sp|P37454|EXOA_BACSU Exodeoxyribonuclease; TrEMBL-Plants: tr|A0A0B2PJ66|A0A0B2PJ66_GLYSO Uncharacterized protein; Found in the gene: LotjaGi2g1v0087300_LC | 6 | ||
| – | Endonuclease/exonuclease/phosphatase family protein; TAIR: AT2G41460.1 apurinic endonuclease-redox protein; Swiss-Prot: sp|Q73GP1|PYRB_WOLPM Aspartate carbamoyltransferase; TrEMBL-Plants: tr|A0A072VJ84|A0A072VJ84_MEDTR Endonuclease/exonuclease/phosphatase family protein; Found in the gene: LotjaGi2g1v0107400_LC | 6 | ||
| – | Endonuclease/exonuclease/phosphatase family protein; TAIR: AT1G40390.1 DNAse I-like superfamily protein; Swiss-Prot: sp|B9EAS8|RF3_MACCJ Peptide chain release factor 3; TrEMBL-Plants: tr|A0A151TSI2|A0A151TSI2_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0176000_LC | 6 | ||
| – | Endonuclease/exonuclease/phosphatase family protein; TAIR: AT5G02310.1 proteolysis 6; Swiss-Prot: sp|F4KCC2|PRT6_ARATH E3 ubiquitin-protein ligase PRT6; TrEMBL-Plants: tr|K7MS60|K7MS60_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0198800_LC | 7 | ||
| – | Endonuclease/exonuclease/phosphatase family protein; TAIR: AT2G41460.4 apurinic endonuclease-redox protein; Swiss-Prot: sp|P37454|EXOA_BACSU Exodeoxyribonuclease; TrEMBL-Plants: tr|K7MR81|K7MR81_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0208200_LC | 8 | ||
| – | Endonuclease/exonuclease/phosphatase family protein; TAIR: AT1G43760.1 DNAse I-like superfamily protein; Swiss-Prot: sp|P51173|APEA_DICDI DNA-(apurinic or apyrimidinic site) lyase; TrEMBL-Plants: tr|A0A151QNL1|A0A151QNL1_CAJCA Putative ribonuclease H protein family; Found in the gene: LotjaGi3g1v0081100_LC | 8 | ||
| – | Endonuclease/exonuclease/phosphatase family protein; TAIR: AT3G21530.4 DNAse I-like superfamily protein; Swiss-Prot: sp|P51173|APEA_DICDI DNA-(apurinic or apyrimidinic site) lyase; TrEMBL-Plants: tr|A5B9F0|A5B9F0_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0183000_LC | 6 | ||
| – | Endonuclease/exonuclease/phosphatase family protein; TAIR: AT2G36910.1 ATP binding cassette subfamily B1; Swiss-Prot: sp|Q9ZKR8|QUED_HELPJ 6-carboxy-5,6,7,8-tetrahydropterin synthase; TrEMBL-Plants: tr|I3T1C0|I3T1C0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0319000_LC | 9 | ||
| – | Endonuclease/exonuclease/phosphatase family protein; TAIR: AT1G40390.1 DNAse I-like superfamily protein; Swiss-Prot: sp|P09030|EX3_ECOLI Exodeoxyribonuclease III; TrEMBL-Plants: tr|A0A151QNL1|A0A151QNL1_CAJCA Putative ribonuclease H protein family; Found in the gene: LotjaGi3g1v0349400_LC | 8 | ||
| – | DNA-(apurinic or apyrimidinic site) lyase; TAIR: AT4G36050.3 endonuclease/exonuclease/phosphatase family protein; Swiss-Prot: sp|F4JNY0|APE2_ARATH DNA-(apurinic or apyrimidinic site) lyase 2; TrEMBL-Plants: tr|A0A151QUY4|A0A151QUY4_CAJCA DNA-(apurinic or apyrimidinic site) lyase; Found in the gene: LotjaGi4g1v0128100 | 13 | ||
| – | Endonuclease/exonuclease/phosphatase family protein; TAIR: AT4G36050.2 endonuclease/exonuclease/phosphatase family protein; Swiss-Prot: sp|F4JNY0|APE2_ARATH DNA-(apurinic or apyrimidinic site) lyase 2; TrEMBL-Plants: tr|A0A0B2R0X2|A0A0B2R0X2_GLYSO Mediator of RNA polymerase II transcription subunit 25; Found in the gene: LotjaGi5g1v0120300_LC | 6 | ||
| – | DNA-(apurinic or apyrimidinic site) lyase; TAIR: AT2G41460.1 apurinic endonuclease-redox protein; Swiss-Prot: sp|P45951|ARP_ARATH DNA-(apurinic or apyrimidinic site) lyase, chloroplastic; TrEMBL-Plants: tr|K7K9G6|K7K9G6_SOYBN DNA-(apurinic or apyrimidinic site) lyase; Found in the gene: LotjaGi5g1v0135000 | 23 | ||
| – | Endonuclease/exonuclease/phosphatase family protein; TAIR: AT4G01480.1 pyrophosphorylase 5; Swiss-Prot: sp|P14381|YTX2_XENLA Transposon TX1 uncharacterized 149 kDa protein; TrEMBL-Plants: tr|F4NCL3|F4NCL3_BETVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0035400_LC | 8 | ||
| – | Endonuclease/exonuclease/phosphatase family protein; TAIR: AT4G36050.3 endonuclease/exonuclease/phosphatase family protein; Swiss-Prot: sp|O00370|LORF2_HUMAN LINE-1 retrotransposable element ORF2 protein; TrEMBL-Plants: tr|A0A151QNL1|A0A151QNL1_CAJCA Putative ribonuclease H protein family; Found in the gene: LotjaGi6g1v0039500_LC | 8 | ||
| – | Endonuclease/exonuclease/phosphatase family protein; TAIR: AT2G41460.1 apurinic endonuclease-redox protein; Swiss-Prot: sp|P51173|APEA_DICDI DNA-(apurinic or apyrimidinic site) lyase; TrEMBL-Plants: tr|A0A151QNL1|A0A151QNL1_CAJCA Putative ribonuclease H protein family; Found in the gene: LotjaGi6g1v0319200_LC | 8 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| SSF56219 | SUPERFAMILY | 1 | 4.55 |