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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0664600 |
| Transcript ID | LotjaGi1g1v0664600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ankyrin repeat family protein / BTB/POZ domain-containing protein; TAIR: AT2G41370.1 Ankyrin repeat family protein / BTB/POZ domain-containing protein; Swiss-Prot: sp|Q9ZVC2|NPR5_ARATH Regulatory protein NPR5; TrEMBL-Plants: tr|G3LSH3|G3LSH3_LOTJA BTB/POZ ankyrin repeat protein; Found in the gene: LotjaGi1g1v0664600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:122646569..122648969) extracted from Lotus japonicus Gifu genome v1.2.
ATCACCATGTCCCTTGAAGACTCTCTAAGATCTCTGTCCCTAGATTACCTCAACCTCCTCATCAACGGCCAAGCCTTCAG CGACGTCACCTTCAGCGTGGAAGGCCGCCTAGTCCACGCCCACCGATGCATCCTCGCTGCCAGGAGCCTCTTCTTCCGGA AATTCTTCTGCGGCCCCGACCCACCTCCTCCTTCCGGCAACCTCGACTCCCCCGGCGGACCTCGAGTCAACTCGCCGAGG CCCGGCGGAGTCATCCCGGTTAACTCCGTCGGCTACGAAGTCTTCCTCCTCATGCTCCAGTTCCTCTACAGTGGCCAAGT CTCCATCGTGCCACAGAAGCACGAGCCGAGACCCAATTGCGGTGAGCGTGCCTGCTGGCACACGCATTGCACCTCCGCCG TTGATCTCGCCCTTGACACTCTCGCCGCCGCGAGATACTTCGGCGTTGAACAGCTCGCATTGCTCACACAGGTAGTTGTT GTTTAATTTATTATCATTTCCTTATTGTTGCCAATATCAGTAGTAACAAACAAACATATGACCATCAACTTCACCACCAC TGTTTCTCTCTCTCTCTCTTGTTTCTTCGTGATTAGTGTGACCAGTCTTATGTTTTGTGGGTCTTGGGAATTTGCCCAAT TACTGCCATGGTTTTTGGGAACTGGGAAGGGGCCATTTTTATTCTCCTCTAGTATATTTTAATTTAATTCTTTATTCTAA CAAATTTTTAATTAAGTGGGTGAGTTTAATTTTGAGCCTCCTAATTTGAGTTTCAATCTATTCCATCACCAGATTAGTAA CAGTTGCTTGGTTCTATTTTATGATCTATTGTCATGAACAAGTGACTGGTTCTTTTATTTCACATTAATTCTTCTGAGTA ATGAACTTCCTTTCATTTACCTTCACTTGTTGTTGCTAGTACTAGCATCTTCTTTAGGCTAAAAATTAAAGCTAGCTATG TGTGTGTTTTTATGTTAGTGTTTGACAACTTTGTACTTGATTTCATGTAGTGAAAATTAGAGTAGTAGGAGACACGACAG TTTTGTTTTTGTTTTTGGTTTCTCGAATTGGAGTTCTTCCACCCACAACGATGTAAGCTGAGGAGTTTCTAAATTTAGTT CATGAAATCCAGTCTTGTCTGTCTACCATATACAGTGAGCGCACCACCAAAATCTTTCCCAAACATTCACTTTCCTCATT TGTTCCCGTTTAAAAGCGAAACACAAACACCACACACACCAATGCAAGCAAAAAAGAAGAAAGAAAGAACAAAAATAAAA AGTACTAGTGTCCGTTTCGTTATACTATAACTCTCTCGTTATACCCAAAAACAAAACATCTCATCCTCTTTGTTCCCTTC ATGTTTCATTTTTCAATAATGCAAATTCATGATTGTTTTTGAATTCATTGACAGAAACAACTAGCGAGCATGGTGGAGAA GGCTTCAATAGAGGATGTAATGAAAGTGCTGCTGGCTTCTAGAAAACAAGACATGCACCAGCTCTGGACCACATGTTCCC ACCTCGTAGCTAAATCTGGTCTCCCTCCAGAGGTTCTCGCCAAGCATCTTCCCATTGACATTGTTGCCAAGATTGAAGAG CTCCGCCTCAAATCCACCCTTGCACGCCGCTCTCTGATCCCTCACCACCACCATCACCACCACCACCATGGCCACCATGA CATGGGAGCAGCGGCAGACCTGGAGGATCAGAAAATCCGCCGGATGAGGCGGGCGCTTGACTCCTCGGATGTGGAGCTTG TGAAGCTCATGGTGATGGGAGAAGGCCTTAACCTTGATGAGGCGCTGGCCTTACCATACGCTGTCGAGAATTGCAGCAGG GAAGTGGTTAAAGCCCTGCTGGAGCTCGGGGCGGCGGATGTCAACTACCCATCGGGACCGTCTGGGAAGACGCCGCTCCA CATCGCGGCTGAGATGGTCTCCCCGGACATGGTGGCGGTGCTGCTGGACCACCACGCCGACCCGAATGTCCGGACCGTGG ACGGCGTCACGCCTCTGGACATCCTCAGAACCCTAACCTCAGATTTCCTCTTCAAAGGTGCTGTCCCAGGATTAACCCAC ATTGAACCAAACAAGCTTAGGCTGTGTTTGGAGCTTGTTCAATCAGCAGCTCTTGTTATGTCAAGGGAAGAAGGTAATGC CAATGCAAACAGCAGCAACAACAACAATGCTCCTTGTTCAGCAGCTACTCCGATATACCCTCCTATGAATGAGGATCACA ATAGTAGTAGCAGCAATGCTAACCTTAACTTGGATTCCAGGTTGGTGTATCTCAACCTCGGCGCGGCCCAAATGAGCGGT GATGATGATAGCAGCCACGGCAGCCACCGGGAAGCCATGAACCAAGCCATGTACCACCACCACCACTCACATGACTATTA G
CDS sequence (LotjaGi1g1v0664600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCCTTGAAGACTCTCTAAGATCTCTGTCCCTAGATTACCTCAACCTCCTCATCAACGGCCAAGCCTTCAGCGACGT CACCTTCAGCGTGGAAGGCCGCCTAGTCCACGCCCACCGATGCATCCTCGCTGCCAGGAGCCTCTTCTTCCGGAAATTCT TCTGCGGCCCCGACCCACCTCCTCCTTCCGGCAACCTCGACTCCCCCGGCGGACCTCGAGTCAACTCGCCGAGGCCCGGC GGAGTCATCCCGGTTAACTCCGTCGGCTACGAAGTCTTCCTCCTCATGCTCCAGTTCCTCTACAGTGGCCAAGTCTCCAT CGTGCCACAGAAGCACGAGCCGAGACCCAATTGCGGTGAGCGTGCCTGCTGGCACACGCATTGCACCTCCGCCGTTGATC TCGCCCTTGACACTCTCGCCGCCGCGAGATACTTCGGCGTTGAACAGCTCGCATTGCTCACACAGAAACAACTAGCGAGC ATGGTGGAGAAGGCTTCAATAGAGGATGTAATGAAAGTGCTGCTGGCTTCTAGAAAACAAGACATGCACCAGCTCTGGAC CACATGTTCCCACCTCGTAGCTAAATCTGGTCTCCCTCCAGAGGTTCTCGCCAAGCATCTTCCCATTGACATTGTTGCCA AGATTGAAGAGCTCCGCCTCAAATCCACCCTTGCACGCCGCTCTCTGATCCCTCACCACCACCATCACCACCACCACCAT GGCCACCATGACATGGGAGCAGCGGCAGACCTGGAGGATCAGAAAATCCGCCGGATGAGGCGGGCGCTTGACTCCTCGGA TGTGGAGCTTGTGAAGCTCATGGTGATGGGAGAAGGCCTTAACCTTGATGAGGCGCTGGCCTTACCATACGCTGTCGAGA ATTGCAGCAGGGAAGTGGTTAAAGCCCTGCTGGAGCTCGGGGCGGCGGATGTCAACTACCCATCGGGACCGTCTGGGAAG ACGCCGCTCCACATCGCGGCTGAGATGGTCTCCCCGGACATGGTGGCGGTGCTGCTGGACCACCACGCCGACCCGAATGT CCGGACCGTGGACGGCGTCACGCCTCTGGACATCCTCAGAACCCTAACCTCAGATTTCCTCTTCAAAGGTGCTGTCCCAG GATTAACCCACATTGAACCAAACAAGCTTAGGCTGTGTTTGGAGCTTGTTCAATCAGCAGCTCTTGTTATGTCAAGGGAA GAAGGTAATGCCAATGCAAACAGCAGCAACAACAACAATGCTCCTTGTTCAGCACAATGCTAA
Protein sequence (LotjaGi1g1v0664600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLEDSLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPPPSGNLDSPGGPRVNSPRPG GVIPVNSVGYEVFLLMLQFLYSGQVSIVPQKHEPRPNCGERACWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLAS MVEKASIEDVMKVLLASRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIDIVAKIEELRLKSTLARRSLIPHHHHHHHHH GHHDMGAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALPYAVENCSREVVKALLELGAADVNYPSGPSGK TPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVMSRE EGNANANSSNNNNAPCSAQC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 418 | 418 | 2.1E-260 | – | |
| PANTHER | 1 | 418 | 418 | 2.1E-260 | – | |
| SUPERFAMILY | 8 | 160 | 153 | 2.3E-19 | ||
| CDD | 8 | 162 | 155 | 7.68219E-53 | – | |
| Gene3D | 12 | 197 | 186 | 5.6E-26 | – | |
| Pfam | 16 | 112 | 97 | 4.1E-14 | ||
| SMART | 25 | 162 | 138 | 5.3E-22 | ||
| ProSiteProfiles | 25 | 109 | 85 | 17.335 | ||
| Pfam | 197 | 260 | 64 | 1.1E-14 | ||
| Gene3D | 250 | 366 | 117 | 4.7E-20 | ||
| Pfam | 266 | 348 | 83 | 2.0E-10 | ||
| SUPERFAMILY | 277 | 361 | 85 | 2.02E-18 | ||
| ProSiteProfiles | 283 | 356 | 74 | 16.892 | ||
| SMART | 283 | 313 | 31 | 7.0 | ||
| ProSiteProfiles | 318 | 350 | 33 | 11.808 | ||
| SMART | 318 | 347 | 30 | 1.3E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0664600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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