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LotjaGi1g1v0674500.1

Overview

Field Value
Gene ID LotjaGi1g1v0674500
Transcript ID LotjaGi1g1v0674500.1
Lotus japonicus genome version Gifu v1.2
Description Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q7TN75|PEG10_MOUSE Retrotransposon-derived protein PEG10; TrEMBL-Plants: tr|A0A0S3SX19|A0A0S3SX19_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0674500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:124113602..124115621) extracted from Lotus japonicus Gifu genome v1.2.

ATTCAATCAATTCATTGTTTCTAACATGGTATCATGAGCTTTTAGCTTCCGCTTTCTCTCTTCGTCTCTGATTTTCTCGG GAAAATTCCTTTTCTGTTGGAATTTTCTTGGTGACGGTTACCTATCCTTTTTTTCTTTTCTTCTCAGACATTTTCTCGAA CACTTTCTTGGCATTCTCTTAGCTATTGTTTCTACTTTCTCAGAGATTTTCTCAAGCTTTTTCTACTTTCTCAGAGATTT TCTCGAGCACTTTCTCGGCATTCTCTTTGCCATTTCTTCACTTCTCTTCACTGATTCTTCTGCATAAAGCTTTGAAGCTT CTTCTACCTTCAACAATGGCTCCGATTACTCGAGCAAATGTGACAGACTCGACTCATGATTACTACATTCATCCAAACGA GAATCCCTCACTTGTTCTCGTTTCTCCAGTTCTTGATGGGAGCAATTACCATGGCTGGGCTCGTGCAATGGCGATGTCAT TGCAGATGAAGAATAAGTTTGGTTTCGCTGATGGTTCGATTGCAAAGCTCTCTGATGATGATCCTATGCTTTCAGCTTGG AAGCGCTGCAATAATCTTGTGCTTTCGTGGATTAATCATTCGGTTTCTCCAGAGATAGCAACTAGCATCATCTGGATTGA CACAGCTTCTGGAGCTTGGCAAGATCTGAAAGATCGTTTCTCGCAGGGAGATTCGGTAAGAATTTCTCACCTGCATCATG AATTGTACTCTCTAAATCAAGGTGATTTGTCTATTATTGCTTACTACACCAAGATGAAGATTCTGTGGGATGAACTATGC AATTATCTGCCAATTCCTGTTTGTGTTTCCCCTCATGCGTGCTGTTGTGAGGCTGTGAAAATCTTCAAGCAATATAGGGA AAATGATTGTGTGCTGTGTTTCCTTAGAGGTTTGAATGATAATTTTGCTGCTGCTAGATCTCAGATTTTGTTGATGGAAC CTTTGCCAACTTTGTCTAAGATTTTCTCTATGATAATACAACAAGAAAGACACTTAGGCATTGGAGTACTTCCTGAGCCA GCAGCTATGGCAGTTCATACTGGGAATACACAAGGCACATATTCTAATTCCAACAGGGGAAGGTCGAATTCTCAGTATTC TTCAAGTAAATCCAATGTGCAGAGGTTGTGCACACACTGTGGAAGGCAGAATCACACTGTTGAAACATGCTTCCTTAAGC ATGGCTATCCTTCCAACTTTCCAAATGGTTATAAGCCAAAGAAGGCTTACATTACAACTTCAGGAGGTGATTCACATTCT TCTTCAGATCAAGATGAACCTCCTTCTTCAAGTCTTGAGCTGACAAGAGAGCAACTTCAAGGTTTACTGGCATTACTTCC TCAATCTAAGCCCACTGCAGTTTCATAAGCCCCCAACCTTAAGCCTATTGCTGCTTCCAACCTTGTCAATAGTCACAATG TTATTGCTAATAACATAGGTATGGTCAATTCTCAATGGATCATGGATTCAGGTGCCACTGATCACATTGCTTCTTCCTTA TCTTTCTTTTCTTCTTACTACTCAATCAAACCTGTACCTGTATCTTTGCCTAATGGAGCTCATGCTATTGCAAACCATTT AGGGACAGTATTTCTTTCACCTACCCTGACTTTACATAATGTTCTCTATGTACCTGAATTTTCTGTCAATCTTGTTTCTA TACACAAGCTTACCAAAGTATTAAATCACAGATTGATTTTCACTGATTCCTTGTGTTTGATTCAGGACAAGACCACTTTG AAGATGATTGGGAGAGCTGAGATCAAGGATGGGCTATACATCATGGAGCTTCCACCTATTACTAGTTTCAAACCACTTCA TACCTTCCATTCTGTAAACATGAGTACTGTTTCCTCTTCTAATAAGTTGCCAAATATATGGCATCATAGGTTAGGCCATC CATCTCAGCCTTGTTATATTTCTTTGCAACAAATGTACCCTGCTATTACTACTTCTCCGTGTAAGAATTGTGATACTTGT CATTTTGCTAAACAAAAAAG 

CDS sequence (LotjaGi1g1v0674500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTCCGATTACTCGAGCAAATGTGACAGACTCGACTCATGATTACTACATTCATCCAAACGAGAATCCCTCACTTGT TCTCGTTTCTCCAGTTCTTGATGGGAGCAATTACCATGGCTGGGCTCGTGCAATGGCGATGTCATTGCAGATGAAGAATA AGTTTGGTTTCGCTGATGGTTCGATTGCAAAGCTCTCTGATGATGATCCTATGCTTTCAGCTTGGAAGCGCTGCAATAAT CTTGTGCTTTCGTGGATTAATCATTCGGTTTCTCCAGAGATAGCAACTAGCATCATCTGGATTGACACAGCTTCTGGAGC TTGGCAAGATCTGAAAGATCGTTTCTCGCAGGGAGATTCGGTAAGAATTTCTCACCTGCATCATGAATTGTACTCTCTAA ATCAAGGTGATTTGTCTATTATTGCTTACTACACCAAGATGAAGATTCTGTGGGATGAACTATGCAATTATCTGCCAATT CCTGTTTGTGTTTCCCCTCATGCGTGCTGTTGTGAGGCTGTGAAAATCTTCAAGCAATATAGGGAAAATGATTGTGTGCT GTGTTTCCTTAGAGGTTTGAATGATAATTTTGCTGCTGCTAGATCTCAGATTTTGTTGATGGAACCTTTGCCAACTTTGT CTAAGATTTTCTCTATGATAATACAACAAGAAAGACACTTAGGCATTGGAGTACTTCCTGAGCCAGCAGCTATGGCAGTT CATACTGGGAATACACAAGGCACATATTCTAATTCCAACAGGGGAAGGTCGAATTCTCAGTATTCTTCAAGTAAATCCAA TGTGCAGAGGTTGTGCACACACTGTGGAAGGCAGAATCACACTGTTGAAACATGCTTCCTTAAGCATGGCTATCCTTCCA ACTTTCCAAATGGTTATAAGCCAAAGAAGGCTTACATTACAACTTCAGGAGGTGATTCACATTCTTCTTCAGATCAAGAT GAACCTCCTTCTTCAAGTCTTGAGCTGACAAGAGAGCAACTTCAAGGTTTACTGGCATTACTTCCTCAATCTAAGCCCAC TGCAGTTTCATAA 

Protein sequence (LotjaGi1g1v0674500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAPITRANVTDSTHDYYIHPNENPSLVLVSPVLDGSNYHGWARAMAMSLQMKNKFGFADGSIAKLSDDDPMLSAWKRCNN LVLSWINHSVSPEIATSIIWIDTASGAWQDLKDRFSQGDSVRISHLHHELYSLNQGDLSIIAYYTKMKILWDELCNYLPI PVCVSPHACCCEAVKIFKQYRENDCVLCFLRGLNDNFAAARSQILLMEPLPTLSKIFSMIIQQERHLGIGVLPEPAAMAV HTGNTQGTYSNSNRGRSNSQYSSSKSNVQRLCTHCGRQNHTVETCFLKHGYPSNFPNGYKPKKAYITTSGGDSHSSSDQD EPPSSSLELTREQLQGLLALLPQSKPTAVS 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Pfam 19 64 46 7.9E-16
PANTHER 51 311 261 1.5E-76
PANTHER 51 311 261 1.5E-76
Pfam 75 225 151 4.6E-8
MobiDBLite 242 263 22 -
MobiDBLite 302 329 28 -
MobiDBLite 308 329 22 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0674500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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