Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0674500 |
| Transcript ID | LotjaGi1g1v0674500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q7TN75|PEG10_MOUSE Retrotransposon-derived protein PEG10; TrEMBL-Plants: tr|A0A0S3SX19|A0A0S3SX19_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0674500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:124113602..124115621) extracted from Lotus japonicus Gifu genome v1.2.
ATTCAATCAATTCATTGTTTCTAACATGGTATCATGAGCTTTTAGCTTCCGCTTTCTCTCTTCGTCTCTGATTTTCTCGG GAAAATTCCTTTTCTGTTGGAATTTTCTTGGTGACGGTTACCTATCCTTTTTTTCTTTTCTTCTCAGACATTTTCTCGAA CACTTTCTTGGCATTCTCTTAGCTATTGTTTCTACTTTCTCAGAGATTTTCTCAAGCTTTTTCTACTTTCTCAGAGATTT TCTCGAGCACTTTCTCGGCATTCTCTTTGCCATTTCTTCACTTCTCTTCACTGATTCTTCTGCATAAAGCTTTGAAGCTT CTTCTACCTTCAACAATGGCTCCGATTACTCGAGCAAATGTGACAGACTCGACTCATGATTACTACATTCATCCAAACGA GAATCCCTCACTTGTTCTCGTTTCTCCAGTTCTTGATGGGAGCAATTACCATGGCTGGGCTCGTGCAATGGCGATGTCAT TGCAGATGAAGAATAAGTTTGGTTTCGCTGATGGTTCGATTGCAAAGCTCTCTGATGATGATCCTATGCTTTCAGCTTGG AAGCGCTGCAATAATCTTGTGCTTTCGTGGATTAATCATTCGGTTTCTCCAGAGATAGCAACTAGCATCATCTGGATTGA CACAGCTTCTGGAGCTTGGCAAGATCTGAAAGATCGTTTCTCGCAGGGAGATTCGGTAAGAATTTCTCACCTGCATCATG AATTGTACTCTCTAAATCAAGGTGATTTGTCTATTATTGCTTACTACACCAAGATGAAGATTCTGTGGGATGAACTATGC AATTATCTGCCAATTCCTGTTTGTGTTTCCCCTCATGCGTGCTGTTGTGAGGCTGTGAAAATCTTCAAGCAATATAGGGA AAATGATTGTGTGCTGTGTTTCCTTAGAGGTTTGAATGATAATTTTGCTGCTGCTAGATCTCAGATTTTGTTGATGGAAC CTTTGCCAACTTTGTCTAAGATTTTCTCTATGATAATACAACAAGAAAGACACTTAGGCATTGGAGTACTTCCTGAGCCA GCAGCTATGGCAGTTCATACTGGGAATACACAAGGCACATATTCTAATTCCAACAGGGGAAGGTCGAATTCTCAGTATTC TTCAAGTAAATCCAATGTGCAGAGGTTGTGCACACACTGTGGAAGGCAGAATCACACTGTTGAAACATGCTTCCTTAAGC ATGGCTATCCTTCCAACTTTCCAAATGGTTATAAGCCAAAGAAGGCTTACATTACAACTTCAGGAGGTGATTCACATTCT TCTTCAGATCAAGATGAACCTCCTTCTTCAAGTCTTGAGCTGACAAGAGAGCAACTTCAAGGTTTACTGGCATTACTTCC TCAATCTAAGCCCACTGCAGTTTCATAAGCCCCCAACCTTAAGCCTATTGCTGCTTCCAACCTTGTCAATAGTCACAATG TTATTGCTAATAACATAGGTATGGTCAATTCTCAATGGATCATGGATTCAGGTGCCACTGATCACATTGCTTCTTCCTTA TCTTTCTTTTCTTCTTACTACTCAATCAAACCTGTACCTGTATCTTTGCCTAATGGAGCTCATGCTATTGCAAACCATTT AGGGACAGTATTTCTTTCACCTACCCTGACTTTACATAATGTTCTCTATGTACCTGAATTTTCTGTCAATCTTGTTTCTA TACACAAGCTTACCAAAGTATTAAATCACAGATTGATTTTCACTGATTCCTTGTGTTTGATTCAGGACAAGACCACTTTG AAGATGATTGGGAGAGCTGAGATCAAGGATGGGCTATACATCATGGAGCTTCCACCTATTACTAGTTTCAAACCACTTCA TACCTTCCATTCTGTAAACATGAGTACTGTTTCCTCTTCTAATAAGTTGCCAAATATATGGCATCATAGGTTAGGCCATC CATCTCAGCCTTGTTATATTTCTTTGCAACAAATGTACCCTGCTATTACTACTTCTCCGTGTAAGAATTGTGATACTTGT CATTTTGCTAAACAAAAAAG
CDS sequence (LotjaGi1g1v0674500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCCGATTACTCGAGCAAATGTGACAGACTCGACTCATGATTACTACATTCATCCAAACGAGAATCCCTCACTTGT TCTCGTTTCTCCAGTTCTTGATGGGAGCAATTACCATGGCTGGGCTCGTGCAATGGCGATGTCATTGCAGATGAAGAATA AGTTTGGTTTCGCTGATGGTTCGATTGCAAAGCTCTCTGATGATGATCCTATGCTTTCAGCTTGGAAGCGCTGCAATAAT CTTGTGCTTTCGTGGATTAATCATTCGGTTTCTCCAGAGATAGCAACTAGCATCATCTGGATTGACACAGCTTCTGGAGC TTGGCAAGATCTGAAAGATCGTTTCTCGCAGGGAGATTCGGTAAGAATTTCTCACCTGCATCATGAATTGTACTCTCTAA ATCAAGGTGATTTGTCTATTATTGCTTACTACACCAAGATGAAGATTCTGTGGGATGAACTATGCAATTATCTGCCAATT CCTGTTTGTGTTTCCCCTCATGCGTGCTGTTGTGAGGCTGTGAAAATCTTCAAGCAATATAGGGAAAATGATTGTGTGCT GTGTTTCCTTAGAGGTTTGAATGATAATTTTGCTGCTGCTAGATCTCAGATTTTGTTGATGGAACCTTTGCCAACTTTGT CTAAGATTTTCTCTATGATAATACAACAAGAAAGACACTTAGGCATTGGAGTACTTCCTGAGCCAGCAGCTATGGCAGTT CATACTGGGAATACACAAGGCACATATTCTAATTCCAACAGGGGAAGGTCGAATTCTCAGTATTCTTCAAGTAAATCCAA TGTGCAGAGGTTGTGCACACACTGTGGAAGGCAGAATCACACTGTTGAAACATGCTTCCTTAAGCATGGCTATCCTTCCA ACTTTCCAAATGGTTATAAGCCAAAGAAGGCTTACATTACAACTTCAGGAGGTGATTCACATTCTTCTTCAGATCAAGAT GAACCTCCTTCTTCAAGTCTTGAGCTGACAAGAGAGCAACTTCAAGGTTTACTGGCATTACTTCCTCAATCTAAGCCCAC TGCAGTTTCATAA
Protein sequence (LotjaGi1g1v0674500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPITRANVTDSTHDYYIHPNENPSLVLVSPVLDGSNYHGWARAMAMSLQMKNKFGFADGSIAKLSDDDPMLSAWKRCNN LVLSWINHSVSPEIATSIIWIDTASGAWQDLKDRFSQGDSVRISHLHHELYSLNQGDLSIIAYYTKMKILWDELCNYLPI PVCVSPHACCCEAVKIFKQYRENDCVLCFLRGLNDNFAAARSQILLMEPLPTLSKIFSMIIQQERHLGIGVLPEPAAMAV HTGNTQGTYSNSNRGRSNSQYSSSKSNVQRLCTHCGRQNHTVETCFLKHGYPSNFPNGYKPKKAYITTSGGDSHSSSDQD EPPSSSLELTREQLQGLLALLPQSKPTAVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 19 | 64 | 46 | 7.9E-16 | ||
| PANTHER | 51 | 311 | 261 | 1.5E-76 | – | |
| PANTHER | 51 | 311 | 261 | 1.5E-76 | – | |
| Pfam | 75 | 225 | 151 | 4.6E-8 | – | |
| MobiDBLite | 242 | 263 | 22 | - | – | |
| MobiDBLite | 302 | 329 | 28 | - | – | |
| MobiDBLite | 308 | 329 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0674500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…