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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0674500 |
Transcript ID | LotjaGi1g1v0674500.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q7TN75|PEG10_MOUSE Retrotransposon-derived protein PEG10; TrEMBL-Plants: tr|A0A0S3SX19|A0A0S3SX19_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0674500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:124113602..124115621) extracted from Lotus japonicus Gifu genome v1.2.
ATTCAATCAATTCATTGTTTCTAACATGGTATCATGAGCTTTTAGCTTCCGCTTTCTCTCTTCGTCTCTGATTTTCTCGG GAAAATTCCTTTTCTGTTGGAATTTTCTTGGTGACGGTTACCTATCCTTTTTTTCTTTTCTTCTCAGACATTTTCTCGAA CACTTTCTTGGCATTCTCTTAGCTATTGTTTCTACTTTCTCAGAGATTTTCTCAAGCTTTTTCTACTTTCTCAGAGATTT TCTCGAGCACTTTCTCGGCATTCTCTTTGCCATTTCTTCACTTCTCTTCACTGATTCTTCTGCATAAAGCTTTGAAGCTT CTTCTACCTTCAACAATGGCTCCGATTACTCGAGCAAATGTGACAGACTCGACTCATGATTACTACATTCATCCAAACGA GAATCCCTCACTTGTTCTCGTTTCTCCAGTTCTTGATGGGAGCAATTACCATGGCTGGGCTCGTGCAATGGCGATGTCAT TGCAGATGAAGAATAAGTTTGGTTTCGCTGATGGTTCGATTGCAAAGCTCTCTGATGATGATCCTATGCTTTCAGCTTGG AAGCGCTGCAATAATCTTGTGCTTTCGTGGATTAATCATTCGGTTTCTCCAGAGATAGCAACTAGCATCATCTGGATTGA CACAGCTTCTGGAGCTTGGCAAGATCTGAAAGATCGTTTCTCGCAGGGAGATTCGGTAAGAATTTCTCACCTGCATCATG AATTGTACTCTCTAAATCAAGGTGATTTGTCTATTATTGCTTACTACACCAAGATGAAGATTCTGTGGGATGAACTATGC AATTATCTGCCAATTCCTGTTTGTGTTTCCCCTCATGCGTGCTGTTGTGAGGCTGTGAAAATCTTCAAGCAATATAGGGA AAATGATTGTGTGCTGTGTTTCCTTAGAGGTTTGAATGATAATTTTGCTGCTGCTAGATCTCAGATTTTGTTGATGGAAC CTTTGCCAACTTTGTCTAAGATTTTCTCTATGATAATACAACAAGAAAGACACTTAGGCATTGGAGTACTTCCTGAGCCA GCAGCTATGGCAGTTCATACTGGGAATACACAAGGCACATATTCTAATTCCAACAGGGGAAGGTCGAATTCTCAGTATTC TTCAAGTAAATCCAATGTGCAGAGGTTGTGCACACACTGTGGAAGGCAGAATCACACTGTTGAAACATGCTTCCTTAAGC ATGGCTATCCTTCCAACTTTCCAAATGGTTATAAGCCAAAGAAGGCTTACATTACAACTTCAGGAGGTGATTCACATTCT TCTTCAGATCAAGATGAACCTCCTTCTTCAAGTCTTGAGCTGACAAGAGAGCAACTTCAAGGTTTACTGGCATTACTTCC TCAATCTAAGCCCACTGCAGTTTCATAAGCCCCCAACCTTAAGCCTATTGCTGCTTCCAACCTTGTCAATAGTCACAATG TTATTGCTAATAACATAGGTATGGTCAATTCTCAATGGATCATGGATTCAGGTGCCACTGATCACATTGCTTCTTCCTTA TCTTTCTTTTCTTCTTACTACTCAATCAAACCTGTACCTGTATCTTTGCCTAATGGAGCTCATGCTATTGCAAACCATTT AGGGACAGTATTTCTTTCACCTACCCTGACTTTACATAATGTTCTCTATGTACCTGAATTTTCTGTCAATCTTGTTTCTA TACACAAGCTTACCAAAGTATTAAATCACAGATTGATTTTCACTGATTCCTTGTGTTTGATTCAGGACAAGACCACTTTG AAGATGATTGGGAGAGCTGAGATCAAGGATGGGCTATACATCATGGAGCTTCCACCTATTACTAGTTTCAAACCACTTCA TACCTTCCATTCTGTAAACATGAGTACTGTTTCCTCTTCTAATAAGTTGCCAAATATATGGCATCATAGGTTAGGCCATC CATCTCAGCCTTGTTATATTTCTTTGCAACAAATGTACCCTGCTATTACTACTTCTCCGTGTAAGAATTGTGATACTTGT CATTTTGCTAAACAAAAAAG
CDS sequence (LotjaGi1g1v0674500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCCGATTACTCGAGCAAATGTGACAGACTCGACTCATGATTACTACATTCATCCAAACGAGAATCCCTCACTTGT TCTCGTTTCTCCAGTTCTTGATGGGAGCAATTACCATGGCTGGGCTCGTGCAATGGCGATGTCATTGCAGATGAAGAATA AGTTTGGTTTCGCTGATGGTTCGATTGCAAAGCTCTCTGATGATGATCCTATGCTTTCAGCTTGGAAGCGCTGCAATAAT CTTGTGCTTTCGTGGATTAATCATTCGGTTTCTCCAGAGATAGCAACTAGCATCATCTGGATTGACACAGCTTCTGGAGC TTGGCAAGATCTGAAAGATCGTTTCTCGCAGGGAGATTCGGTAAGAATTTCTCACCTGCATCATGAATTGTACTCTCTAA ATCAAGGTGATTTGTCTATTATTGCTTACTACACCAAGATGAAGATTCTGTGGGATGAACTATGCAATTATCTGCCAATT CCTGTTTGTGTTTCCCCTCATGCGTGCTGTTGTGAGGCTGTGAAAATCTTCAAGCAATATAGGGAAAATGATTGTGTGCT GTGTTTCCTTAGAGGTTTGAATGATAATTTTGCTGCTGCTAGATCTCAGATTTTGTTGATGGAACCTTTGCCAACTTTGT CTAAGATTTTCTCTATGATAATACAACAAGAAAGACACTTAGGCATTGGAGTACTTCCTGAGCCAGCAGCTATGGCAGTT CATACTGGGAATACACAAGGCACATATTCTAATTCCAACAGGGGAAGGTCGAATTCTCAGTATTCTTCAAGTAAATCCAA TGTGCAGAGGTTGTGCACACACTGTGGAAGGCAGAATCACACTGTTGAAACATGCTTCCTTAAGCATGGCTATCCTTCCA ACTTTCCAAATGGTTATAAGCCAAAGAAGGCTTACATTACAACTTCAGGAGGTGATTCACATTCTTCTTCAGATCAAGAT GAACCTCCTTCTTCAAGTCTTGAGCTGACAAGAGAGCAACTTCAAGGTTTACTGGCATTACTTCCTCAATCTAAGCCCAC TGCAGTTTCATAA
Protein sequence (LotjaGi1g1v0674500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPITRANVTDSTHDYYIHPNENPSLVLVSPVLDGSNYHGWARAMAMSLQMKNKFGFADGSIAKLSDDDPMLSAWKRCNN LVLSWINHSVSPEIATSIIWIDTASGAWQDLKDRFSQGDSVRISHLHHELYSLNQGDLSIIAYYTKMKILWDELCNYLPI PVCVSPHACCCEAVKIFKQYRENDCVLCFLRGLNDNFAAARSQILLMEPLPTLSKIFSMIIQQERHLGIGVLPEPAAMAV HTGNTQGTYSNSNRGRSNSQYSSSKSNVQRLCTHCGRQNHTVETCFLKHGYPSNFPNGYKPKKAYITTSGGDSHSSSDQD EPPSSSLELTREQLQGLLALLPQSKPTAVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Pfam | 19 | 64 | 46 | 7.9E-16 | ||
PANTHER | 51 | 311 | 261 | 1.5E-76 | – | |
PANTHER | 51 | 311 | 261 | 1.5E-76 | – | |
Pfam | 75 | 225 | 151 | 4.6E-8 | – | |
MobiDBLite | 242 | 263 | 22 | - | – | |
MobiDBLite | 302 | 329 | 28 | - | – | |
MobiDBLite | 308 | 329 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0674500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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