Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0679700 |
| Transcript ID | LotjaGi1g1v0679700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine/threonine-protein kinase; TAIR: AT5G03700.1 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein; Swiss-Prot: sp|Q9LZR8|Y5370_ARATH PAN domain-containing protein At5g03700; TrEMBL-Plants: tr|A0A0L9U882|A0A0L9U882_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0679700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:124683101..124686205) extracted from Lotus japonicus Gifu genome v1.2.
TACACACCTAACTAAATTTTCAAAATCAGCCAGCCAAAATTAGTAATAAAACATGATTAAGTAAGAATAGTTATAATATT TCAGTCAAATGTCGTCCATTCACTAAAAATTTAAACTAAAACTTGTCACCTCATTCCCACTTAAACTAATATATTACACC AGCTCATCCACATTGTAATTTTCCATCGTGAGATATTATTTTAAGATTTTAAGCATATAGTTTGCATAAAATATAGTATT TTATATCATGTAGTATCAACTTTATAAAACCTCATACTCTCTACTCTCATCATGTTCAATGTTCATCAACTTGCTTCATA AAACCCATATCCTAAGTTCTATCTTCTATGCTTATGCTCTGTGAATTGCAATTTTCAACATGAAGATTAAATCCATACTC ATTCTTCTTCTCTCCCTTCAGATTTCGTTAATATGTCATGCAGAAGATGCAGCAACAGCAACTCCCATTCCACAAGAGCT TCTCACTGGTTTCTCAGCAGTCCCACAACCCACAACGACGCCGTTTCAGGCCATTCTGACCGACCCCACCGGAAACTTCT CGTTAGGTTTCCTCCGGCAGAACCAAAACCAGCTCAAACTCGCCGTCATCCACGTAGCTTCCTCGGAACCATTCTGGGTC GCCAACCCGACCCGGCTCGCATCATGGGCCCACACCACGCGCCTCTCCTTCAACGGCAGCCTTGTGTTGTCGGACTCAAA AACCGGCGTGTCCTGGTCCACCGCCACCAACGGCCACCGCGCCGTGCTCCTCAACAACTCCAACCTGCAAGTTCAAAACA GAGCCACCCAAACCCCCATCTGGGAAAGCTTCCATTTCCCCACCAACACGCTAGTTCAGGACCAGAATCTCACCGCCGAC AAGTCTCTGGTTTCCTCCAACGGCCTCTACTCTTTCCGGTTAGGCGACGATTTCATGGGCCTGTACACAAATCTCAACGG CGGAAAGCGGTTACTATACTGGAAGCACACGGCGATGGAAGCGAAAGATGAGGTCAAGGAAGGGGAGGGGCCGATTTACG CCAGAGTCAACTCGGAAGGTGGGTATCTCGGGATGTACCAAACGAGTTCAAAACCAGTCGATGTTCAGAAGTTCAGCACG TTCCAACAGGATTCCACAACGTCGTCGTTTTTGTTGGTGCGTTTGGAAACGGACGGGAATCTCAAAGGGTATTACTGGAA CGGTTCGAACTGGATGCTGAACTATGAAGCCATTGGTGAAACTTGCGAGCTTCCTAATCCATGCGGTTCGTATGGTTTGT GTACGCCTGGTGGAGCTGGGTGTTCTTGTTTGGATAATCAGACCCGGTTTGAATCGGGTGGGTGTGAGGGTGGTGGTGGT GGTGATTTGTGCGGTGGGAGAGGGTTTGGTGGAGGAGAGAGTTACCGGGTTTTGAGGAGGAGTGGGGTGGAGCCGCCGCA TAAGGAGCTGGTTGCGCACGTGACGACGGCATCTTTGGCGGGTTGTGAGGGGTTGTGTGAGAGAAATTGTAGTTGTTGGG GGGTGTTCTATAGTAATGCTACCGGGTTTTGTTATGTTTTGGATTACCCGGTTGGGACGGTTTTGGGTACCGGGGATGGG TCGAAGGTGGGTTATTTTAAGGTCAGGGAAGGTGGCGAGGGGAGGAATCGGGTCGGGGCGCGAGTTGGGATTGTGGTTGG GGTGTTGGTTTTGATTGGGGTGGTTATTTTTGGGGTTGGGTTGTGTGTGAAGAGGTTGCAAAGGAGGAGAGGGGTGAGTG GCGGGATGTTGAAGGAGGAGAATGGCCATGGGGCTTCGCCCGGCCCGTATCGGAATCTCAAATCCGCAAGTTTTAGATCC ATCGAGATGTCCGTGCCAATCAGTAGATAATTGGATTGTATCTAGCTGAGGGTTCGATCTCAAAAGAAGAATTTGTTAAG ATAAATCTACTCACTCACATATGATATACGAGACTCGAGATGATTAGTGTTATGACTGCCTACCTGCTGGTTGCGGGGTA GCTTTGGTGCGCAATGGAGAGTGACGCAAGGGGTGACGTTGAGATTGATGCTTTATTCATGTTACTACTTGTAGTGGAGG CATGTGAAGGTCGTTGACTATTTTAAACAAGTAGCAGACACACATTCACACAAGCACAAAGAAGAGTGAAGATGGAGATG GACCCAATTGAGATACGGATATGTGCGCACATCACTTTAATTTGTCTGTATTCATTTCTCACCAACTGGGAATACAACAA GGGATATGGTTGCGCGCCGAATGAAACCCATGGCTGCACTATTTTGCGCATGGAGACAAAAATATCAATTTACCCAACTC AAATTAAATTATTGTCAATTGCTTTCAAACATGTTTTTATTAGTCTTTTTGAATAATGTCTGAGTTTGAATTTTTCTAAT GGAATGAATTTCTAATAGGAGAGCTGACCTCATCTGTATATTATCATGATAATGTCTAATTATCGTGTGAATATTCCTCG GATTTCCTAATGTGTATGATAACGAATTTGTTCATGTAGTAAACCAAGACCAGATTCATAGTTTTCTTGGGAGGAATCAT AAATCTAATTATTTTTAGGCTTAATTGCAACTTTGGTCCCTGATATTTACCAATTTCACAATTTTAGTCCCCCACCTAAT TTAATTACACGGATGGTCCCTGACTTTGCTGGTCGTCTGCAACATTGGTCCTACCGTTTATTTGTTAACGGAGTAGGTTT ACGTGGATGGTCACTTAGCTGATGTGGAAGTCGAATTGGAGAGAGAAAGAGACCAGCAACTGATTCAACCTTCTTTCTCG CCTCAAGGGACTCGTTCGTTCTTTATATCTTCCCTTTTCGCTCAATCTCAAGCGCTTCGAAACATCTTCCTCACGGTGCT CTGTTTTTTAAGGAGGAAGAGGGTAGAAGATGACCGTTGCAGGTCTCACGTGCTTCTCTCTCTCTTCAGTCCTTCTTTCT CTCTCTAATTGGACATCCACGTAAGCCTCCTCCGTTAACAAATAAACGACAGGACCAACGTTGTAGACAGCCAGCAAAGT CAGGGACCATCCATGTAATTAAATTAGGTGGGGGACTAAAATCGTGGAATTGGTAAACGTTAGGG
CDS sequence (LotjaGi1g1v0679700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGATTAAATCCATACTCATTCTTCTTCTCTCCCTTCAGATTTCGTTAATATGTCATGCAGAAGATGCAGCAACAGC AACTCCCATTCCACAAGAGCTTCTCACTGGTTTCTCAGCAGTCCCACAACCCACAACGACGCCGTTTCAGGCCATTCTGA CCGACCCCACCGGAAACTTCTCGTTAGGTTTCCTCCGGCAGAACCAAAACCAGCTCAAACTCGCCGTCATCCACGTAGCT TCCTCGGAACCATTCTGGGTCGCCAACCCGACCCGGCTCGCATCATGGGCCCACACCACGCGCCTCTCCTTCAACGGCAG CCTTGTGTTGTCGGACTCAAAAACCGGCGTGTCCTGGTCCACCGCCACCAACGGCCACCGCGCCGTGCTCCTCAACAACT CCAACCTGCAAGTTCAAAACAGAGCCACCCAAACCCCCATCTGGGAAAGCTTCCATTTCCCCACCAACACGCTAGTTCAG GACCAGAATCTCACCGCCGACAAGTCTCTGGTTTCCTCCAACGGCCTCTACTCTTTCCGGTTAGGCGACGATTTCATGGG CCTGTACACAAATCTCAACGGCGGAAAGCGGTTACTATACTGGAAGCACACGGCGATGGAAGCGAAAGATGAGGTCAAGG AAGGGGAGGGGCCGATTTACGCCAGAGTCAACTCGGAAGGTGGGTATCTCGGGATGTACCAAACGAGTTCAAAACCAGTC GATGTTCAGAAGTTCAGCACGTTCCAACAGGATTCCACAACGTCGTCGTTTTTGTTGGTGCGTTTGGAAACGGACGGGAA TCTCAAAGGGTATTACTGGAACGGTTCGAACTGGATGCTGAACTATGAAGCCATTGGTGAAACTTGCGAGCTTCCTAATC CATGCGGTTCGTATGGTTTGTGTACGCCTGGTGGAGCTGGGTGTTCTTGTTTGGATAATCAGACCCGGTTTGAATCGGGT GGGTGTGAGGGTGGTGGTGGTGGTGATTTGTGCGGTGGGAGAGGGTTTGGTGGAGGAGAGAGTTACCGGGTTTTGAGGAG GAGTGGGGTGGAGCCGCCGCATAAGGAGCTGGTTGCGCACGTGACGACGGCATCTTTGGCGGGTTGTGAGGGGTTGTGTG AGAGAAATTGTAGTTGTTGGGGGGTGTTCTATAGTAATGCTACCGGGTTTTGTTATGTTTTGGATTACCCGGTTGGGACG GTTTTGGGTACCGGGGATGGGTCGAAGGTGGGTTATTTTAAGGTCAGGGAAGGTGGCGAGGGGAGGAATCGGGTCGGGGC GCGAGTTGGGATTGTGGTTGGGGTGTTGGTTTTGATTGGGGTGGTTATTTTTGGGGTTGGGTTGTGTGTGAAGAGGTTGC AAAGGAGGAGAGGGGTGAGTGGCGGGATGTTGAAGGAGGAGAATGGCCATGGGGCTTCGCCCGGCCCGTATCGGAATCTC AAATCCGCAAGTTTTAGATCCATCGAGATGTCCGTGCCAATCAGTAGATAA
Protein sequence (LotjaGi1g1v0679700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKIKSILILLLSLQISLICHAEDAATATPIPQELLTGFSAVPQPTTTPFQAILTDPTGNFSLGFLRQNQNQLKLAVIHVA SSEPFWVANPTRLASWAHTTRLSFNGSLVLSDSKTGVSWSTATNGHRAVLLNNSNLQVQNRATQTPIWESFHFPTNTLVQ DQNLTADKSLVSSNGLYSFRLGDDFMGLYTNLNGGKRLLYWKHTAMEAKDEVKEGEGPIYARVNSEGGYLGMYQTSSKPV DVQKFSTFQQDSTTSSFLLVRLETDGNLKGYYWNGSNWMLNYEAIGETCELPNPCGSYGLCTPGGAGCSCLDNQTRFESG GCEGGGGGDLCGGRGFGGGESYRVLRRSGVEPPHKELVAHVTTASLAGCEGLCERNCSCWGVFYSNATGFCYVLDYPVGT VLGTGDGSKVGYFKVREGGEGRNRVGARVGIVVGVLVLIGVVIFGVGLCVKRLQRRRGVSGGMLKEENGHGASPGPYRNL KSASFRSIEMSVPISR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 21 | 21 | - | – | |
| PIRSF | 1 | 428 | 428 | 7.4E-76 | ||
| Phobius | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 21 | 21 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| PANTHER | 7 | 491 | 485 | 2.8E-179 | – | |
| PANTHER | 7 | 491 | 485 | 2.8E-179 | – | |
| Phobius | 18 | 21 | 4 | - | – | |
| Phobius | 22 | 428 | 407 | - | – | |
| ProSiteProfiles | 38 | 151 | 114 | 8.029 | ||
| SMART | 43 | 154 | 112 | 0.0086 | ||
| Gene3D | 45 | 152 | 108 | 1.1E-7 | ||
| SUPERFAMILY | 84 | 202 | 119 | 2.88E-15 | ||
| Pfam | 85 | 178 | 94 | 1.5E-11 | ||
| Pfam | 247 | 312 | 66 | 4.1E-6 | ||
| TMHMM | 426 | 448 | 23 | - | – | |
| Phobius | 429 | 450 | 22 | - | – | |
| Phobius | 451 | 496 | 46 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Recognition of pollen | The process, involving the sharing and interaction of the single locus incompatibility haplotypes, involved in the recognition or rejection of the self pollen by cells in the stigma. This process ensures out-breeding in certain plant species. |
Expression pattern of LotjaGi1g1v0679700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…