Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0680600 |
| Transcript ID | LotjaGi1g1v0680600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT5G12100.1 pentatricopeptide (PPR) repeat-containing protein; Swiss-Prot: sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100, mitochondrial; TrEMBL-Plants: tr|A0A0R0KSN4|A0A0R0KSN4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0680600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:124775172..124778745) extracted from Lotus japonicus Gifu genome v1.2.
CGAAGTGGCAATGGAACTACGAACACGCTCTGCACTTCATCTTCTTCCCAAGCCACCCTTCAACTCCTCCATCTCCTTCT TCTCCTCCCAACCACTCTCACTCCCCGAACCCAATCCCCAAGACCAGAAACGCCATCAGAAAGTTCAAAAGCTTCAATCA TTACTCCACCAGGATCGCATCAAAACCGCACGAAGGTTCCTCAAATCGCTTCTCCTCTCCAAAACAACCTTCTCTTCCCT CTCTGAACTCCACGCATTCGTCTCAAAACCCATATTTTCTGATACCCTTTTATGGCTTTGTTCCAGTCCCAAAACGCTCA ACGATGCCACCGAGCTTTACTCTTCCATGAGAAAAGACGGCGTTCTCCCCTCTGTGCGTTCTGTCAACCGTTTGTTCGAG ACTCTGGTCGGTTCAAAGCAGTTTGAGAAAGTTCTTGCTGTGTTTACTGACATGGTGGAATCTGGGATTCGGCCTGATGT TGTGTCTTATGGGAAAGCTGTTGAGGCTGCGGTGATGTTGAAGGATCTTGATAAGGGTTTTGAGTTGATGGGTTGCATGG AGAAGGAAAGGGTTGGTCCTTCTGTTTTTGTGTATAATTTGGTGTTGGGTGGGTTGTGTAAAGTGAGGAGGGTCAAGGAT GCTCGGAAGCTGTTTGATGAAATGTTGCACAGAAACCTGGTTCCGAATACGGTCACTTATAATACGCTTATCGATGGGTA CTGTAAGGTGGGTGAGATGGAAAAAGCTTTTAGTTTGAAGGCGAGGATGAAGGCCCCAAATGCGGAGCCGAGTGTAATCA CGTATAATTGCTTGTTAGGGGGACTTTGTAGTTCGGGGAGGGTGAACGATGCGAGGGAGGTGTTGGTGGAGATGGAGGGG AATGGTTTTTTGCCTGGTGGGTTTTCGCGTATTGTGTTTGATGATGATTCAGCGTGTTCAAATGGTAATGGCTCGTTGCG TGCAAATGTAGCAGCAAGGATTGATGAGCGTACTTATAGTGCTTTGTTGAATGGATTTTGCAGGGTGGGTAGGATTGAAA AGGCCAAGGAGGTTTTGGCCAAGCTTGTGGAGAATGGAGTTGTTCCGAGCCAGATATCATATAATATACTAGTGAATGCA TATTGCCATGAGGGTTACGTTGAGAAAGCTATACAGACAGCTGAACAAATGGAGGAAAGAGGGTTGAAACCTAGTTATGT CACCTTCAATACTCTGATTAACAAGTTCTGCGAAACTGGGGAGGTGGACCAGGCTGAGAGATGGGTTAAGAAGATGCTGG AGAAGGGTATTGCCCCGACTCTGGAGACGTATAATTCTTTAATAAATGGATATGGCCGAATTAGCAATTTTGTCAAGTGT TTTGAGATTCTTGAAGAAATCGAAAAGAAAGGGATGAAGCCTAATGTTATAAGCTACGGTTCTCTGATCAATTGTCTATG CAAGGATCGTAAGCTTCTTGATGCTGAGATTGTGCTAGGGGATATGGCAAGTCGTGGAGTTTCTCCAAATGCAGAAATAT ATAATATGCTCATTGAAGCTAGTTGCTCATTGAGTAAATTAAAAGATGCCTTCAGATTTTTGGATGAAATGATAAAAAAT GGAATAGATGCAACTCTTGTGACATATAATACCCTGATACATGGGCTGGGAAGAAATGGAAGGTTGGCGGAAGCCGAGGA TATGTTTCTCCTAATGACTAGCAAAGGATATAAGCCGGATGTGATAACATACAATTCCCTGATCTCCGGATATGCCAATT TAGGAAACACCAAGAGATGCCTTGAATTGTATGACAATATGAAGACGCAAGGCATAAAGCCCTCAATTGGGACTTTCCAC CCTTTGATCAATGAATGCAAGAAGGAAGGTGTGGTGACAATGGAGAAAATGTTTCAAGAAATATTGCAGATGGATTTGGA TCCAGATCGAGTTGTTTATAATGAGATGATTTACGGTTATGCTGAAGATGGAAATGTTCTGAAGGCAATGTCTTTGTATC AACAGATGATTGATCAGGGAGTGGATTCTGACAAGGTGACTTACAATTACTTGATTCTAGCACACCTTAGAGATAGAAAG GTTTCCGAAACAAAGCATCTTATTGATGATATGAAGGCCAAGGGACTGGTTCCAAAAACTGATACATATAACATTCTGGT TAAGGGACATTGTGACTTACAAGATTTCAGTGGTGCGTATTTCTGGTATAGGGAAATGTCAGACAGTGGTTTGTGTTTAA ATAGTGGAATCAGCTATCAGCTGATATCAGGACTTAGAGAGGAGGGAATGCTGCAAGAGGCTCAAGTTGTGTCCTCAGAA TTGAGTAGTAGAGAACTGAAAGAAGACTGACAAAAATAATACACACCACTGTTGTGTTCTATCAATCATTCTTTTGCTGA TATTATAGGCTTGCTGTTACCCTTGGAGAGGAGACGAAGTCTGATACCCGGGGATTAGAAGTTAAATAAGCACAAGCTCT ACCTTGTAAGCCTATTCACAATTCAGCCAATTCTTATTGTTTATCTAAAATTTCTTCAGTTTTAAGATGTAAAGACATGC ATAAGTTGTTCTTTGCTTATACAGGTCGGAATTCTCATATTCTAAAGGTTACCTCTTATTGTAAGTTTTTAACGGATTTT TGCTGGTTATATTATCAACTTCAAAGAAATATCTTCACTAAAGGATCATGCATCACTTAGCTGGTTGTCATTGTTGATAG TTGTTTGTGAGGCTGAAATTCTACCAGACCTGTCAAAAAGGAACAAATGGTAATAAACTTTCGGTACAGTTACAGAGACA TGTGATGGCAAGCTTGTCTAAATATGACAAGGATCTAAAGAAAATGCCAGAAAAGTTTCAGTAACCAAGAGAATCATTCC AAACTTGTATTTGGCATATCCTTCTTTTGCATAGGATGATATTTGAACTGCTCAACAAATTAAGCATGAATTTGGTAGAC CTGACTGACTCGTTTAGAAAGATTGCATGTCAAAGTAGAGTTGTAACTGGTAAGATTAACTAAAAAGCTTGAGTTCGAAT GTTGCTGGAAGTTTGGTTGTCTGGCAAACATAAAATAGATTACTCATTGTAATGGGGCAAATCTTGTGTTGCATTTTCAC ACTAATATTATTGTTTCCTCTATCAATTTATACTAGATAGTTTCTAGTTTCAAATGAATTGTTGAGACTTGGCAATGTCA AGTGAAATAGTGTCTATCTCTTACTTAAAAGGAGATAGATACAAAATATTTGAGGAAACTTGAGATTGAGAGAGATTACA CTTTCGTGTCAGATACATATAAGTTTCTTTTTGTCAATCACATTTATAATTGCTAAAAGTTACCATGATATTTAAGTATG ATTCATTGTTTAACCATTTTTTATTATAATTCGTGTAGTGTAATGTAAAGTAGAATTTCAATTCTAAAACACAGTCACGA GGGTTTTGGAACTGATCTACCTATTCACATTATTTGCTTTTTTTGTTCTATTTGTTTTAAATTTGAAAGAAGTGTCTTTA AATTAACCTCCTACATTTGGAAAGGGATAATTCAAGCGAAGAATAAAATTGCAG
CDS sequence (LotjaGi1g1v0680600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACTACGAACACGCTCTGCACTTCATCTTCTTCCCAAGCCACCCTTCAACTCCTCCATCTCCTTCTTCTCCTCCCA ACCACTCTCACTCCCCGAACCCAATCCCCAAGACCAGAAACGCCATCAGAAAGTTCAAAAGCTTCAATCATTACTCCACC AGGATCGCATCAAAACCGCACGAAGGTTCCTCAAATCGCTTCTCCTCTCCAAAACAACCTTCTCTTCCCTCTCTGAACTC CACGCATTCGTCTCAAAACCCATATTTTCTGATACCCTTTTATGGCTTTGTTCCAGTCCCAAAACGCTCAACGATGCCAC CGAGCTTTACTCTTCCATGAGAAAAGACGGCGTTCTCCCCTCTGTGCGTTCTGTCAACCGTTTGTTCGAGACTCTGGTCG GTTCAAAGCAGTTTGAGAAAGTTCTTGCTGTGTTTACTGACATGGTGGAATCTGGGATTCGGCCTGATGTTGTGTCTTAT GGGAAAGCTGTTGAGGCTGCGGTGATGTTGAAGGATCTTGATAAGGGTTTTGAGTTGATGGGTTGCATGGAGAAGGAAAG GGTTGGTCCTTCTGTTTTTGTGTATAATTTGGTGTTGGGTGGGTTGTGTAAAGTGAGGAGGGTCAAGGATGCTCGGAAGC TGTTTGATGAAATGTTGCACAGAAACCTGGTTCCGAATACGGTCACTTATAATACGCTTATCGATGGGTACTGTAAGGTG GGTGAGATGGAAAAAGCTTTTAGTTTGAAGGCGAGGATGAAGGCCCCAAATGCGGAGCCGAGTGTAATCACGTATAATTG CTTGTTAGGGGGACTTTGTAGTTCGGGGAGGGTGAACGATGCGAGGGAGGTGTTGGTGGAGATGGAGGGGAATGGTTTTT TGCCTGGTGGGTTTTCGCGTATTGTGTTTGATGATGATTCAGCGTGTTCAAATGGTAATGGCTCGTTGCGTGCAAATGTA GCAGCAAGGATTGATGAGCGTACTTATAGTGCTTTGTTGAATGGATTTTGCAGGGTGGGTAGGATTGAAAAGGCCAAGGA GGTTTTGGCCAAGCTTGTGGAGAATGGAGTTGTTCCGAGCCAGATATCATATAATATACTAGTGAATGCATATTGCCATG AGGGTTACGTTGAGAAAGCTATACAGACAGCTGAACAAATGGAGGAAAGAGGGTTGAAACCTAGTTATGTCACCTTCAAT ACTCTGATTAACAAGTTCTGCGAAACTGGGGAGGTGGACCAGGCTGAGAGATGGGTTAAGAAGATGCTGGAGAAGGGTAT TGCCCCGACTCTGGAGACGTATAATTCTTTAATAAATGGATATGGCCGAATTAGCAATTTTGTCAAGTGTTTTGAGATTC TTGAAGAAATCGAAAAGAAAGGGATGAAGCCTAATGTTATAAGCTACGGTTCTCTGATCAATTGTCTATGCAAGGATCGT AAGCTTCTTGATGCTGAGATTGTGCTAGGGGATATGGCAAGTCGTGGAGTTTCTCCAAATGCAGAAATATATAATATGCT CATTGAAGCTAGTTGCTCATTGAGTAAATTAAAAGATGCCTTCAGATTTTTGGATGAAATGATAAAAAATGGAATAGATG CAACTCTTGTGACATATAATACCCTGATACATGGGCTGGGAAGAAATGGAAGGTTGGCGGAAGCCGAGGATATGTTTCTC CTAATGACTAGCAAAGGATATAAGCCGGATGTGATAACATACAATTCCCTGATCTCCGGATATGCCAATTTAGGAAACAC CAAGAGATGCCTTGAATTGTATGACAATATGAAGACGCAAGGCATAAAGCCCTCAATTGGGACTTTCCACCCTTTGATCA ATGAATGCAAGAAGGAAGGTGTGGTGACAATGGAGAAAATGTTTCAAGAAATATTGCAGATGGATTTGGATCCAGATCGA GTTGTTTATAATGAGATGATTTACGGTTATGCTGAAGATGGAAATGTTCTGAAGGCAATGTCTTTGTATCAACAGATGAT TGATCAGGGAGTGGATTCTGACAAGGTGACTTACAATTACTTGATTCTAGCACACCTTAGAGATAGAAAGGTTTCCGAAA CAAAGCATCTTATTGATGATATGAAGGCCAAGGGACTGGTTCCAAAAACTGATACATATAACATTCTGGTTAAGGGACAT TGTGACTTACAAGATTTCAGTGGTGCGTATTTCTGGTATAGGGAAATGTCAGACAGTGGTTTGTGTTTAAATAGTGGAAT CAGCTATCAGCTGATATCAGGACTTAGAGAGGAGGGAATGCTGCAAGAGGCTCAAGTTGTGTCCTCAGAATTGAGTAGTA GAGAACTGAAAGAAGACTGA
Protein sequence (LotjaGi1g1v0680600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELRTRSALHLLPKPPFNSSISFFSSQPLSLPEPNPQDQKRHQKVQKLQSLLHQDRIKTARRFLKSLLLSKTTFSSLSEL HAFVSKPIFSDTLLWLCSSPKTLNDATELYSSMRKDGVLPSVRSVNRLFETLVGSKQFEKVLAVFTDMVESGIRPDVVSY GKAVEAAVMLKDLDKGFELMGCMEKERVGPSVFVYNLVLGGLCKVRRVKDARKLFDEMLHRNLVPNTVTYNTLIDGYCKV GEMEKAFSLKARMKAPNAEPSVITYNCLLGGLCSSGRVNDAREVLVEMEGNGFLPGGFSRIVFDDDSACSNGNGSLRANV AARIDERTYSALLNGFCRVGRIEKAKEVLAKLVENGVVPSQISYNILVNAYCHEGYVEKAIQTAEQMEERGLKPSYVTFN TLINKFCETGEVDQAERWVKKMLEKGIAPTLETYNSLINGYGRISNFVKCFEILEEIEKKGMKPNVISYGSLINCLCKDR KLLDAEIVLGDMASRGVSPNAEIYNMLIEASCSLSKLKDAFRFLDEMIKNGIDATLVTYNTLIHGLGRNGRLAEAEDMFL LMTSKGYKPDVITYNSLISGYANLGNTKRCLELYDNMKTQGIKPSIGTFHPLINECKKEGVVTMEKMFQEILQMDLDPDR VVYNEMIYGYAEDGNVLKAMSLYQQMIDQGVDSDKVTYNYLILAHLRDRKVSETKHLIDDMKAKGLVPKTDTYNILVKGH CDLQDFSGAYFWYREMSDSGLCLNSGISYQLISGLREEGMLQEAQVVSSELSSRELKED
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 37 | 204 | 168 | 6.6E-21 | ||
| PANTHER | 82 | 289 | 208 | 4.4E-176 | – | |
| ProSiteProfiles | 86 | 120 | 35 | 7.004 | ||
| ProSiteProfiles | 121 | 155 | 35 | 9.109 | ||
| TIGRFAM | 126 | 157 | 32 | 4.2E-4 | ||
| ProSiteProfiles | 156 | 190 | 35 | 7.498 | ||
| Pfam | 190 | 239 | 50 | 1.1E-17 | ||
| ProSiteProfiles | 191 | 225 | 35 | 12.222 | ||
| TIGRFAM | 194 | 227 | 34 | 6.0E-9 | ||
| Gene3D | 205 | 302 | 98 | 1.1E-27 | ||
| ProSiteProfiles | 226 | 260 | 35 | 12.562 | ||
| TIGRFAM | 228 | 254 | 27 | 4.7E-8 | ||
| PANTHER | 252 | 360 | 109 | 4.4E-176 | – | |
| Pfam | 259 | 289 | 31 | 2.2E-10 | ||
| ProSiteProfiles | 261 | 295 | 35 | 12.584 | ||
| TIGRFAM | 263 | 295 | 33 | 4.3E-8 | ||
| Gene3D | 308 | 409 | 102 | 9.6E-27 | ||
| ProSiteProfiles | 325 | 359 | 35 | 13.285 | ||
| Pfam | 325 | 349 | 25 | 7.6E-7 | ||
| PANTHER | 327 | 514 | 188 | 4.4E-176 | – | |
| TIGRFAM | 328 | 360 | 33 | 9.6E-9 | ||
| SUPERFAMILY | 332 | 463 | 132 | 9.94E-8 | – | |
| Pfam | 359 | 407 | 49 | 3.9E-14 | ||
| ProSiteProfiles | 360 | 394 | 35 | 12.693 | ||
| TIGRFAM | 362 | 395 | 34 | 2.2E-8 | ||
| ProSiteProfiles | 395 | 429 | 35 | 12.419 | ||
| TIGRFAM | 397 | 430 | 34 | 4.9E-8 | ||
| SUPERFAMILY | 406 | 602 | 197 | 1.54E-7 | – | |
| Gene3D | 410 | 515 | 106 | 3.4E-28 | ||
| ProSiteProfiles | 430 | 464 | 35 | 11.422 | ||
| Pfam | 432 | 478 | 47 | 4.9E-11 | ||
| TIGRFAM | 433 | 466 | 34 | 5.2E-8 | ||
| ProSiteProfiles | 465 | 499 | 35 | 11.104 | ||
| TIGRFAM | 467 | 501 | 35 | 1.7E-5 | ||
| Pfam | 495 | 527 | 33 | 5.3E-8 | ||
| ProSiteProfiles | 500 | 534 | 35 | 10.6 | ||
| TIGRFAM | 503 | 532 | 30 | 6.2E-5 | ||
| PANTHER | 504 | 682 | 179 | 4.4E-176 | – | |
| Gene3D | 516 | 622 | 107 | 5.5E-32 | ||
| ProSiteProfiles | 535 | 569 | 35 | 13.033 | ||
| Pfam | 536 | 583 | 48 | 4.5E-14 | ||
| TIGRFAM | 537 | 571 | 35 | 9.0E-11 | ||
| ProSiteProfiles | 570 | 604 | 35 | 13.241 | ||
| TIGRFAM | 572 | 605 | 34 | 2.8E-9 | ||
| PANTHER | 617 | 773 | 157 | 4.4E-176 | – | |
| Gene3D | 623 | 779 | 157 | 6.9E-31 | ||
| ProSiteProfiles | 639 | 673 | 35 | 11.104 | ||
| Pfam | 641 | 671 | 31 | 2.3E-5 | ||
| TIGRFAM | 641 | 671 | 31 | 7.3E-7 | ||
| Pfam | 674 | 722 | 49 | 3.9E-11 | ||
| ProSiteProfiles | 674 | 708 | 35 | 10.654 | ||
| TIGRFAM | 676 | 708 | 33 | 2.5E-4 | ||
| ProSiteProfiles | 709 | 743 | 35 | 9.251 | ||
| TIGRFAM | 712 | 744 | 33 | 2.1E-5 | ||
| ProSiteProfiles | 744 | 778 | 35 | 5.459 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0680600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…