Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0682900 |
| Transcript ID | LotjaGi1g1v0682900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polyadenylate-binding protein; TAIR: AT2G36660.1 poly(A) binding protein 7; Swiss-Prot: sp|Q9ZQA8|PABP7_ARATH Polyadenylate-binding protein 7; TrEMBL-Plants: tr|G7L4Y5|G7L4Y5_MEDTR Polyadenylate-binding protein; Found in the gene: LotjaGi1g1v0682900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:125023357..125028204) extracted from Lotus japonicus Gifu genome v1.2.
GCCCCTACACTCACTCGCTCACACTCACACCACCATTTCTCTCTCTCTCTCTCTCTCTCTAACCTTCTCATTTCACACAC TCTCTCATTTTCTCTCCCAAATTTTCCTTCTCTTCATTTTCCTCTCTTCCAAGATTCCCCTCTCTCTCTCGTTTTCCCTC TTTCGTTCATTCTCCAATCTTGCGCGATTCAATCAATGGCGGTTCCTCCATCGGTCGCCGCCACTCCGGCGTCTCTTTAC GTCGGCGACCTCCACCCTGACATCTCCGACGCCCAGCTCCACGACGCTTTCGCGGAATTCAAGAACCTCGCCTCCGTTCG CGTTTGCAGAGACTCCTCCACCGGCAGGTCACTCTGTTATGGCTATGTCAATTTCCTTTCTCCTCAAGACGGTAACTCAC TCACTCACTCATCCTTTCTTTCAGATTCAGTTTTCTTGAACCATGCATCGTTAATTCGTTCTCCTAGATGATGATTTTCT TTGATTGCGATCTTGATTCGTTACTGCAATGCAATGTGTCTTTAATCTTTTTCCTAATTTCTTGCTTGCTGCGATATAGA TGAAATTGGAAAAGATTTTGTGTTGATTTTGTTCTCTTATGATGAATGTGTTGATTAGATTTTGTGTGTGATTTACCGTA ATCTGCTCTGTTCTGTTTGATTTTGGATTTTGTGTAGCAATGCAAGCAATTGAGGTGAAGAATCATTCAATGCTGAATGG AAAAGTGATAAGGGTCTTGTGGTCGCGTCGTGATCCTGATGTTAGGAAAAGTTGCATTGGGAACGTTTTTGTGAAGGTAT ATAGTACTAACTAGAATGATTTGATATGAAATCTTGGTAAACCAGTAGTGTAGTGTGGTTCATTGTTGTTTCTGGTGTGT GTATTGTGGCAGAACTTGGCAGAATCTGTGGATAGTTCTGGACTGGAAGAAATCTTCAAGAAATATGGGAATATTTTGTC CAGCAAAGTTGTCATGGCTGATGATGGGAAGAGCAAAGGATATGGGTTTGTTCAATTTGAATCAGAGGAGTCTGCAAATG CTGCCATTGAGAAGCTCAATGGCTCTACTATCAATGATAAGCAGATGTATGTGAGAATATTCTGCATTGTTTCTTAGTAA ATTGTTGAAAATTTTCATTGTTTCTTTGATTGCTGTCTTCAATTTCTGTATACCTGTAATTTCCTGAGATGAATTTTGAT ATATATGATGAATTCTTGTCACAGATATGTTGGGAGGTTTGTGAAAAAAAGTGAGCGCATTTTGCCTGGCCCTGATGCCA GTTATACTAATTTGTACATGAAGAATTTGGACCTAGATATTACAGAAGCACTTCTGAAGGAAAAGTTTTCCTCTTTTGGG AAAATCGTTAGCTTGGCTATTTCAAAGGATGAGAATGGGATGTCAAAGGGCTTTGGCTTTGTGAACTATGAAAACCCAGA TGATGCTAAAAGGGCCCTGGAAGCGATGAACGGATCACAACTAGGTAGTTTTTTTTGCATCCTTTTACTGTGCTGGTTTT CTGCAGGCATAGTTGACATTTCTTGATGTACATGACAATGACATGGTTTTGATTTTTCTTAAATAGGTTCAAAGATTCTG TATGTAGCCAGGGCACAGAAGAAGGCTGAGCGTGAGCGGATCTTGAACCATCAATTTGAGGAGAAAAGAAAGGAACAAAT CTTGAAATACAAGGTAACTTGTTTGCCATTCTTTCCTAAATTTAACTAGCCATTATGTTTTCAGTTGTCTTGAATGCTAT GTTTTAACTTCCAGGGATCAAACATTTATGTGAAGAACATTGATGACAATGTAAGCGATGAAGAACTGAGGGACCATTTT AGTGCATGTGGCTCTATAACTTCTGCAAAAGTTATGAAAGACGAGAAAGGGATAAGCAAAGGGTTTGGTTTTGTCTGTTT CTCTACTCCTGAGGAGGCCAACAAAGCTGTGAACACTTTTCATGGTAAGTAAGTTCAGTTGTGTTTGGGACATGATATAT GCTTCAGTGTAGTACTTTCGCAGTAATACAAAAACAGGAATATAATTGCTTGCTATAAGTTCATAAGAAAAAGAATGTAA GACTTCAGTGATATATTTATTGTGTTACAATCTAGAGATTAAATATATTTTATTCTGTGTGCAATGAACTTGTTGCTTTT TATGTTTAGATGACTGGAGGGAATATATGGACAAGAATAAACGCTTATAATTGTTTTATCTTCTTATTCCACAAGATTTG ATAATTACTAATAATTAATAAAATACTAGTAGAGGAACTACTCTCTGTGCTTTGTATCATTACTAGGGTTCCTTTCCATT GCTGGTGAGTTCCTGCCAAGTCCTTTCAAAGGGTTTTATTTATGATTTTTAGGTTTCATTTTTCTGTATGTGAGGTTTCA TTTTTCTGAGGATTCCTGTATACACTCCACTGTATTGCTGATTTTTGAAAAGGGATGATTCTCTTAAAATTTTGAAGAAA ATGTTTCTATTAGCCATTGGGATTATGAGATAAGTCTCTTCTAAAGTGAACTCGTCTATACAGTTCCAGGCAAGGGTATG TCAACTCTTGATTTAACTTAAAGCATATGATGATCTTACCTACTTAAATTTAATGGTGGATGCATCCTTACTTGCACATT TTCTAAACAAGTTCATGAGTGGCTTGTGATATGGACATGATCAATCCTACATGTTAAAGCAAATAAAGAATAAAAAATAT ATTGTGTCAACATATATTACTTTTAGTATATTGGTTTGGAACTGAAGTTATGTTCTGGCAATGTTGCATCTCTGCCTCCA CAATTATTAGCTTGATTTTTTGTATGAATTGTAGAATATTTTATGCATATGACACTTACATTTAGCTACATTTTTTTTCT GCAATGCCTTTATTGTCTTGTCTTGACTCTTGATTGTGTCTAAGTTGATGTTAAATCCTGCAGGATTCATGTTTCATGGT AAACCACTATATGTTGCTCTTGCTCAGAGGAAAGAGGACAGGCAAGCACAGTTGCAACTCCAGTATGCTCAGAAAATAGC AGGACTAGCTGGACCTTCAACTGCCATTATTCCTGGTGGATATCCTCCTTTCTACTATACAGCTACTGGTGTTGTTCCTC ATGTGCCTCATCGAGCTGGGCTTATGTATCAACCTCTGGCAGTGAGGCCAGGATGGAGGGCTAATGGGTTTGCACCTCCT TCTAGATCATTTCAACAATCACCCATTCCTGCTGTGAGTAACAACTTTGTGTGGGAATCGATAAATCGTTGTATTTCATT CACTTTTTTCATTATTTTTTTTAATAAAAATGGAATTCCTGACTAAATAGACACATTTATTTAATTTGGAGAAACCAGTC CTGTTTCTGTGGGATTTTAATGAGTCATGTATATGTATTATCTTTCAGTCACAGGTTGCTAACAATAATAGGCAGCATAG GCAAAACAGGGGCAGGACTAATGGGCATGCAGGATCACAGGGAAATACTCACTCTGTTAATATGCCACAAGCCCAACAGG CTTCTCAGCCTGTGGTCTCTTCAAGGGAGTCAAGTACTCAGCAGGTTTATCTTTTGGAAACCCCCTACTCTCCCCTTTCT CGTGCATAGAACATGATTTGATTTCTAACATGTCACCGATCTATTTGCTTACCAAAAAAAAAAACCGATCTATTTTTAGT TGTAAATGCTTATGCAATGCATATTCTCAGTACAAAATATCTAGTCTCGTGGTGGTGCCAAGACTGCCAAGGCCACTTGT TTCAGTGAATAACACTTAAAAATGCTCTAATAATATTCAAAAGCTCACCTTCAGGACTAGAAAAAAATGTTTTCTTCTGT TCATTTTAAAACTATGGAGATGGTTGGATTTTAATTCGAGACTAGTGCTTTTAGTCCCTTAATATGTTTCATAGGTCTGT TTTCTTAAGTTTCTTTCCTTTGCAGAGAACTGGACAGGCTAAGTACAAAGCTAGTGGACGCCAACATGAGATGGAAAAAG GATCTGAATTCTCATCTAGTGGTTCAAACCCTATCGGAGGGTCCCAGGGATCTGAAGTGCTGCATAGCATGCTCGCTGCT GCTACTCCTGAGCAGCAGAAAGAGATACTTGGCGAGCATCTATACATGCTTGTCCAGAAGCTCAAGGTACAGCAATGCAC TACACTATTTTACTTTTGGTGTTAAAGGCTAGGTTTTTGGATTCTCCAAAAGTATATTTACTATATATAACACCATGTTG AGCAGCCTAGCCAAGCTGCAAAGATTACTGGGATGCTTTTGGAGATGGACAATGCAGAACTGCTGCTTCTCCTGGAATCA CCAGAGTCTCTTTCTGCCAAGGTGGAAGAAGCTGTCCAAGTGCTTAAGAACTCCAAGAACAAAGTTTCTGGCCAGGATAA AATTCATTCAAGTTTCCTTTCAGCTGAGGTTGCAGTGAACTGAAAACTTCATCCTAGAGAGATGGCTCTTGTTAGAAGCA TAGATCATGACTGGTTGAAGCCTCCAATAACAACGCTAACTCAGAAATTTGATACATGAGTTTTGATATCCATATTACCT TTGCAGTATTTCTTATACAGCAGTATATTTCCTTAAGAAAAACAACTTATGTTTTCTCACCTTAGAGTTGATAAGAATTG GTAGTGATGGTAACATTCATAGACAAGTTTGTTTGGGATTTTGATTACATGGATTAACTTCGATGAATTTGGTTCGATAT TTGTCATTTTTCATTCATATGCTACAGTAGTACAGACATGTACACATGAATAAAATGCAAACAAACATGAAATATTTTTA TTCGCCTTATATTGAATAATGATAGCTAAAATTTAATATATAACCTCA
CDS sequence (LotjaGi1g1v0682900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGTTCCTCCATCGGTCGCCGCCACTCCGGCGTCTCTTTACGTCGGCGACCTCCACCCTGACATCTCCGACGCCCA GCTCCACGACGCTTTCGCGGAATTCAAGAACCTCGCCTCCGTTCGCGTTTGCAGAGACTCCTCCACCGGCAGGTCACTCT GTTATGGCTATGTCAATTTCCTTTCTCCTCAAGACGCAATGCAAGCAATTGAGGTGAAGAATCATTCAATGCTGAATGGA AAAGTGATAAGGGTCTTGTGGTCGCGTCGTGATCCTGATGTTAGGAAAAGTTGCATTGGGAACGTTTTTGTGAAGAACTT GGCAGAATCTGTGGATAGTTCTGGACTGGAAGAAATCTTCAAGAAATATGGGAATATTTTGTCCAGCAAAGTTGTCATGG CTGATGATGGGAAGAGCAAAGGATATGGGTTTGTTCAATTTGAATCAGAGGAGTCTGCAAATGCTGCCATTGAGAAGCTC AATGGCTCTACTATCAATGATAAGCAGATATATGTTGGGAGGTTTGTGAAAAAAAGTGAGCGCATTTTGCCTGGCCCTGA TGCCAGTTATACTAATTTGTACATGAAGAATTTGGACCTAGATATTACAGAAGCACTTCTGAAGGAAAAGTTTTCCTCTT TTGGGAAAATCGTTAGCTTGGCTATTTCAAAGGATGAGAATGGGATGTCAAAGGGCTTTGGCTTTGTGAACTATGAAAAC CCAGATGATGCTAAAAGGGCCCTGGAAGCGATGAACGGATCACAACTAGGTTCAAAGATTCTGTATGTAGCCAGGGCACA GAAGAAGGCTGAGCGTGAGCGGATCTTGAACCATCAATTTGAGGAGAAAAGAAAGGAACAAATCTTGAAATACAAGGGAT CAAACATTTATGTGAAGAACATTGATGACAATGTAAGCGATGAAGAACTGAGGGACCATTTTAGTGCATGTGGCTCTATA ACTTCTGCAAAAGTTATGAAAGACGAGAAAGGGATAAGCAAAGGGTTTGGTTTTGTCTGTTTCTCTACTCCTGAGGAGGC CAACAAAGCTGTGAACACTTTTCATGGATTCATGTTTCATGGTAAACCACTATATGTTGCTCTTGCTCAGAGGAAAGAGG ACAGGCAAGCACAGTTGCAACTCCAGTATGCTCAGAAAATAGCAGGACTAGCTGGACCTTCAACTGCCATTATTCCTGGT GGATATCCTCCTTTCTACTATACAGCTACTGGTGTTGTTCCTCATGTGCCTCATCGAGCTGGGCTTATGTATCAACCTCT GGCAGTGAGGCCAGGATGGAGGGCTAATGGGTTTGCACCTCCTTCTAGATCATTTCAACAATCACCCATTCCTGCTTCAC AGGTTGCTAACAATAATAGGCAGCATAGGCAAAACAGGGGCAGGACTAATGGGCATGCAGGATCACAGGGAAATACTCAC TCTGTTAATATGCCACAAGCCCAACAGGCTTCTCAGCCTGTGGTCTCTTCAAGGGAGTCAAGTACTCAGCAGAGAACTGG ACAGGCTAAGTACAAAGCTAGTGGACGCCAACATGAGATGGAAAAAGGATCTGAATTCTCATCTAGTGGTTCAAACCCTA TCGGAGGGTCCCAGGGATCTGAAGTGCTGCATAGCATGCTCGCTGCTGCTACTCCTGAGCAGCAGAAAGAGATACTTGGC GAGCATCTATACATGCTTGTCCAGAAGCTCAAGCCTAGCCAAGCTGCAAAGATTACTGGGATGCTTTTGGAGATGGACAA TGCAGAACTGCTGCTTCTCCTGGAATCACCAGAGTCTCTTTCTGCCAAGGTGGAAGAAGCTGTCCAAGTGCTTAAGAACT CCAAGAACAAAGTTTCTGGCCAGGATAAAATTCATTCAAGTTTCCTTTCAGCTGAGGTTGCAGTGAACTGA
Protein sequence (LotjaGi1g1v0682900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVPPSVAATPASLYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVKNHSMLNG KVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKL NGSTINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYEN PDDAKRALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRDHFSACGSI TSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRQAQLQLQYAQKIAGLAGPSTAIIPG GYPPFYYTATGVVPHVPHRAGLMYQPLAVRPGWRANGFAPPSRSFQQSPIPASQVANNNRQHRQNRGRTNGHAGSQGNTH SVNMPQAQQASQPVVSSRESSTQQRTGQAKYKASGRQHEMEKGSEFSSSGSNPIGGSQGSEVLHSMLAAATPEQQKEILG EHLYMLVQKLKPSQAAKITGMLLEMDNAELLLLLESPESLSAKVEEAVQVLKNSKNKVSGQDKIHSSFLSAEVAVN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 3 | 97 | 95 | 1.4E-21 | ||
| PANTHER | 9 | 623 | 615 | 2.2E-286 | – | |
| PANTHER | 9 | 623 | 615 | 2.2E-286 | – | |
| TIGRFAM | 12 | 612 | 601 | 8.1E-214 | ||
| SUPERFAMILY | 12 | 180 | 169 | 1.7E-47 | ||
| ProSiteProfiles | 12 | 90 | 79 | 15.528 | ||
| CDD | 13 | 92 | 80 | 1.29544E-33 | – | |
| SMART | 13 | 86 | 74 | 4.7E-20 | ||
| Pfam | 14 | 84 | 71 | 7.0E-15 | ||
| CDD | 99 | 174 | 76 | 2.83828E-36 | – | |
| ProSiteProfiles | 100 | 177 | 78 | 18.905 | ||
| SMART | 101 | 173 | 73 | 1.1E-4 | ||
| SMART | 101 | 173 | 73 | 8.1E-26 | ||
| Gene3D | 101 | 173 | 73 | 1.6E-23 | ||
| Pfam | 102 | 170 | 69 | 4.9E-22 | ||
| Gene3D | 177 | 279 | 103 | 8.4E-26 | ||
| SUPERFAMILY | 183 | 277 | 95 | 1.75E-28 | ||
| ProSiteProfiles | 191 | 268 | 78 | 19.604 | ||
| SMART | 192 | 264 | 73 | 3.2E-25 | ||
| SMART | 192 | 264 | 73 | 4.3 | ||
| Pfam | 193 | 261 | 69 | 1.2E-21 | ||
| Coils | 263 | 283 | 21 | - | – | |
| Gene3D | 280 | 382 | 103 | 8.5E-29 | ||
| SUPERFAMILY | 291 | 381 | 91 | 2.55E-30 | ||
| CDD | 293 | 371 | 79 | 1.2447E-48 | – | |
| ProSiteProfiles | 294 | 371 | 78 | 19.689 | ||
| SMART | 295 | 367 | 73 | 1.7E-28 | ||
| SMART | 295 | 367 | 73 | 1.4 | ||
| Pfam | 296 | 364 | 69 | 1.7E-19 | ||
| MobiDBLite | 438 | 539 | 102 | - | – | |
| MobiDBLite | 440 | 511 | 72 | - | – | |
| SUPERFAMILY | 484 | 623 | 140 | 1.01E-32 | ||
| MobiDBLite | 524 | 539 | 16 | - | – | |
| Gene3D | 536 | 631 | 96 | 5.9E-33 | – | |
| ProSiteProfiles | 539 | 616 | 78 | 19.257 | ||
| Pfam | 545 | 611 | 67 | 4.7E-27 | ||
| SMART | 551 | 614 | 64 | 6.9E-32 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi1g1v0682900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…