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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0690200 |
| Transcript ID | LotjaGi1g1v0690200.5 |
| Related isoforms 9 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ4|A0PBZ4_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:125781401..125783704) extracted from Lotus japonicus Gifu genome v1.2.
ATCTATCAGTTTGCAATAATATTAAGATGGCACCAACCACCAATGGCCACCACCAGAGCCAAAATGATTCCATCTTCTGC ACAGCTGCTAAAGCCGGCAGTGATCCCTTAAGTTGGGGTGTAGCAGCAGAGTCAATGAAGGGGAGCCACCTGGACGAGGT CAAGCGCATGGTGGCAGAGTACCGGAAGCCGGTGGTCAAGCTTGGCGGAGAGACTCTCACAATAGCTCAGGTGGCTGCCA TCGCCGCAAACGACCAAGGCGTGAGCGTTGAGCTTTGTGAATCAGCTAGAGCTGGCGTCAAGGCAAGCAGTGACTGGGTG ATGAACAGCATGAACAACGGCACTGACAGTTACGGTGTCACCACCGGCTTCGGCGCCACTTCCCACCGTAGAACCAAAAA TGGCAATGCTTTGCAGCTAGAACTCATCAGGTACTATAATATACTAACTCAATTCCACACTCATCATAACTAACTACTAA TTAATTAATCATCTTATTTGCAATTACATTCAATGTATAAAAGTTGTTGATGTTTATATATTCTTGTTCTTCAGGTTTTT GAATGCTGGAATATTTGGCAATGGTACCGAGACAAACCACACACTGCCACAGCCTGCAACCAGAGCAGCCATGCTAGTGA GGATCAACACTCTTCTCCAAGGATACTCAGGCATTAGATTTGAAATCCTAGAAGCTATCACCAAGCTCATCAACAACAAC ATCACCCCTTGTTTACCACTTCGTGGTACTGTCACGGCTTCTGGTGATCTAGTCCCTCTTTCCTACATTGCTGGTTTGCT TACTGGCCGACAAAATTCCAAAGCCGTTGGACCATCCGGCGAGGTGGTTAATGCCAAGGAAGCTTTCCAATTGGCTGGCA TTGACTCTGGGTTCTTTGAATTGCAGCCTAAGGAAGGGCTTGCCCTTGTAAATGGCACTGCTGTTGGTTCTGGGTTAGCT TCTATTGTTCTCTTTGATGCTAATGTATTGGCTATACTATCTGAAGTTCTATCAGCTATTTTTGCCGAAGTCATGCAAGG GAAACCTGAATTCACTGACCATTTGACTCATAAGTTGAAGCACCACCCTGGCCAGATTGAGGCTGCTGCTATCATGGAGC ACATCTTGGATGGAAGTTCCTATATGAAAGCAGCAAAGAAGTTGCACGATGTGGACCCTTTACAAAAGCCAAAACAAGAT CGATATGCACTTCGTACTTCTCCACAATGGCTTGGTCCTCTGATTGAAGTGATTCGATTCTCAACAAAGTCAATCGAGAG AGAGATTAACTCTGTGAATGACAACCCTTTGATTGATGTTTCAAGAAACAAGGCCTTGCACGGTGGTAATTTCCAAGGAA CCCCTATTGGAGTTTCCATGGACAACACACGCCTGGCTCTTGCAGCAATTGGCAAACTCATGTTTGCTCAATTCACTGAG CTTGTGGATGATCATTACAACAACGGGCTGCCTTCAAATCTCACAGCTAGTAGAAATCCCAGCTTGGATTATGGTCTCAA GGGAGCTGAAATTGCCATGGCTTCTTATTGCTCCGAGCTCCAATATCTTGCGAATCCAGTCACAACTCATGTCCAAAGTG CTGAGCAACATAACCAAGATGTGAATTCCTTGGGTTTGATTTCTTCTAGAAAAACGTATGAAGCCATTGAAATCCTTAAG CTCATGTCTTCCACATTCTTGATTGCACTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAACTTGAAACACTCGGT GAAGAGCACTGTAAGTCAAGTTGCCAAGAGGACTCTGACCACTGGTGTTAATGGGGAACTCCATCCTTCCAGGTTTTGTG AAAAAGATTTGCTGAAGGTGGTCGATAGGGAAACTCTATTTGCCTACATTGATGACCCATGCCTTGCTACTTACCCATTG ATGCAAAAACTGAGGCAAGTGCTTGTGGACCATGCATTAGTAAATGGAGAAAACGAGAAGGACTCAAAGACATCAATCTT TCAAAAGATTGCAACTTTCGAGGATGAGTTGAAGAGTCTCTTGCCTAAGGAGGTCGAAAGCGCAAGGGCTGCATATGAGA GTGGAAATCCAGCAATTCCAAACAAGATAAATGAATGCAGATCTTACCCACTGTACAAGTTTGTGAGGGAGGAGCTGGGA ACTGAGTTGCTTACTGGTGAAAAGACCAGGTCTCCGGGCGAGGAGTTTGACAAATTGTTCACAGCAATATGCCAGGGTAA AATTATTGATCCACTTATGGAATGCCTTGGAGAGTGGAACGGTGCCCCTCTTCCAATTTGTTAA
CDS sequence (LotjaGi1g1v0690200.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACCAACCACCAATGGCCACCACCAGAGCCAAAATGATTCCATCTTCTGCACAGCTGCTAAAGCCGGCAGTGATCC CTTAAGTTGGGGTGTAGCAGCAGAGTCAATGAAGGGGAGCCACCTGGACGAGGTCAAGCGCATGGTGGCAGAGTACCGGA AGCCGGTGGTCAAGCTTGGCGGAGAGACTCTCACAATAGCTCAGGTGGCTGCCATCGCCGCAAACGACCAAGGCGTGAGC GTTGAGCTTTGTGAATCAGCTAGAGCTGGCGTCAAGGCAAGCAGTGACTGGGTGATGAACAGCATGAACAACGGCACTGA CAGTTACGGTGTCACCACCGGCTTCGGCGCCACTTCCCACCGTAGAACCAAAAATGGCAATGCTTTGCAGCTAGAACTCA TCAGGTTTTTGAATGCTGGAATATTTGGCAATGGTACCGAGACAAACCACACACTGCCACAGCCTGCAACCAGAGCAGCC ATGCTAGTGAGGATCAACACTCTTCTCCAAGGATACTCAGGCATTAGATTTGAAATCCTAGAAGCTATCACCAAGCTCAT CAACAACAACATCACCCCTTGTTTACCACTTCGTGGTACTGTCACGGCTTCTGGTGATCTAGTCCCTCTTTCCTACATTG CTGGTTTGCTTACTGGCCGACAAAATTCCAAAGCCGTTGGACCATCCGGCGAGGTGGTTAATGCCAAGGAAGCTTTCCAA TTGGCTGGCATTGACTCTGGGTTCTTTGAATTGCAGCCTAAGGAAGGGCTTGCCCTTGTAAATGGCACTGCTGTTGGTTC TGGGTTAGCTTCTATTGTTCTCTTTGATGCTAATGTATTGGCTATACTATCTGAAGTTCTATCAGCTATTTTTGCCGAAG TCATGCAAGGGAAACCTGAATTCACTGACCATTTGACTCATAAGTTGAAGCACCACCCTGGCCAGATTGAGGCTGCTGCT ATCATGGAGCACATCTTGGATGGAAGTTCCTATATGAAAGCAGCAAAGAAGTTGCACGATGTGGACCCTTTACAAAAGCC AAAACAAGATCGATATGCACTTCGTACTTCTCCACAATGGCTTGGTCCTCTGATTGAAGTGATTCGATTCTCAACAAAGT CAATCGAGAGAGAGATTAACTCTGTGAATGACAACCCTTTGATTGATGTTTCAAGAAACAAGGCCTTGCACGGTGGTAAT TTCCAAGGAACCCCTATTGGAGTTTCCATGGACAACACACGCCTGGCTCTTGCAGCAATTGGCAAACTCATGTTTGCTCA ATTCACTGAGCTTGTGGATGATCATTACAACAACGGGCTGCCTTCAAATCTCACAGCTAGTAGAAATCCCAGCTTGGATT ATGGTCTCAAGGGAGCTGAAATTGCCATGGCTTCTTATTGCTCCGAGCTCCAATATCTTGCGAATCCAGTCACAACTCAT GTCCAAAGTGCTGAGCAACATAACCAAGATGTGAATTCCTTGGGTTTGATTTCTTCTAGAAAAACGTATGAAGCCATTGA AATCCTTAAGCTCATGTCTTCCACATTCTTGATTGCACTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAACTTGA AACACTCGGTGAAGAGCACTGTAAGTCAAGTTGCCAAGAGGACTCTGACCACTGGTGTTAATGGGGAACTCCATCCTTCC AGGTTTTGTGAAAAAGATTTGCTGAAGGTGGTCGATAGGGAAACTCTATTTGCCTACATTGATGACCCATGCCTTGCTAC TTACCCATTGATGCAAAAACTGAGGCAAGTGCTTGTGGACCATGCATTAGTAAATGGAGAAAACGAGAAGGACTCAAAGA CATCAATCTTTCAAAAGATTGCAACTTTCGAGGATGAGTTGAAGAGTCTCTTGCCTAAGGAGGTCGAAAGCGCAAGGGCT GCATATGAGAGTGGAAATCCAGCAATTCCAAACAAGATAAATGAATGCAGATCTTACCCACTGTACAAGTTTGTGAGGGA GGAGCTGGGAACTGAGTTGCTTACTGGTGAAAAGACCAGGTCTCCGGGCGAGGAGTTTGACAAATTGTTCACAGCAATAT GCCAGGGTAAAATTATTGATCCACTTATGGAATGCCTTGGAGAGTGGAACGGTGCCCCTCTTCCAATTTGTTAA
Protein sequence (LotjaGi1g1v0690200.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPTTNGHHQSQNDSIFCTAAKAGSDPLSWGVAAESMKGSHLDEVKRMVAEYRKPVVKLGGETLTIAQVAAIAANDQGVS VELCESARAGVKASSDWVMNSMNNGTDSYGVTTGFGATSHRRTKNGNALQLELIRFLNAGIFGNGTETNHTLPQPATRAA MLVRINTLLQGYSGIRFEILEAITKLINNNITPCLPLRGTVTASGDLVPLSYIAGLLTGRQNSKAVGPSGEVVNAKEAFQ LAGIDSGFFELQPKEGLALVNGTAVGSGLASIVLFDANVLAILSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAA IMEHILDGSSYMKAAKKLHDVDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGN FQGTPIGVSMDNTRLALAAIGKLMFAQFTELVDDHYNNGLPSNLTASRNPSLDYGLKGAEIAMASYCSELQYLANPVTTH VQSAEQHNQDVNSLGLISSRKTYEAIEILKLMSSTFLIALCQAIDLRHLEENLKHSVKSTVSQVAKRTLTTGVNGELHPS RFCEKDLLKVVDRETLFAYIDDPCLATYPLMQKLRQVLVDHALVNGENEKDSKTSIFQKIATFEDELKSLLPKEVESARA AYESGNPAIPNKINECRSYPLYKFVREELGTELLTGEKTRSPGEEFDKLFTAICQGKIIDPLMECLGEWNGAPLPIC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 18 | 717 | 700 | 0.0 | – | |
| PANTHER | 18 | 717 | 700 | 0.0 | ||
| Gene3D | 25 | 263 | 239 | 8.4E-96 | ||
| SUPERFAMILY | 26 | 717 | 692 | 3.22E-263 | ||
| TIGRFAM | 26 | 706 | 681 | 0.0 | ||
| CDD | 62 | 527 | 466 | 0.0 | ||
| Pfam | 64 | 535 | 472 | 1.4E-152 | ||
| ProSitePatterns | 199 | 215 | 17 | - | ||
| Gene3D | 264 | 706 | 443 | 2.3E-217 | – | |
| Gene3D | 530 | 644 | 115 | 2.3E-217 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | L-phenylalanine catabolic process | The chemical reactions and pathways resulting in the breakdown of phenylalanine, 2-amino-3-phenylpropanoic acid. | ||
| Molecular function | Ammonia-lyase activity | Catalysis of the release of ammonia by the cleavage of a carbon-nitrogen bond or the reverse reaction with ammonia as a substrate. |
Expression pattern of LotjaGi1g1v0690200.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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