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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0690200 |
Transcript ID | LotjaGi1g1v0690200.9 |
Related isoforms 9 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ4|A0PBZ4_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:125786496..125788773) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCACCAACCACCAACGGCCACCACCAAAGCCAAACCGATTCCATCTTTTGCACTACAGCTAAAACTGGCAGTGATCC CTTGAGTTGGGGTGTAGCGGCGGAGTCAATGAAGGGGAGCCATCTAGACGAGGTCAAGCGCATGGTGGCGGAGTACAGGA AGCCGGTGGTCAAGCTTGGCGGAGAGACCCTGACAATAGCTCAGGTGGCTGCCATTGCCGCAAACGACAGCGTGAGCGTT GAGCTGTGCGAATCAGCTAGAGCCGGCGTTAAGGCGAGCAGTGACTGGGTCATGAACAGCATGAACAACGGCACTGACAG TTACGGAGTCACCACCGGATTCGGGGCCACCTCCCACCGTAGAACCAAAAATGGCAATGCTTTGCAGCTAGAACTCATCA GGTACTATACTATACTAACTCAAATCCACACTCATCATAACTAACTAGTACTAATTAATTAATCATCATATTTACAATTA CATTCATTGTATAAAAGTTGTTGATGTTTATATATTATTGTTCTTCAGGTTTTTGAATGCTGGAATATTTGGCAATGGTA CCGAGACAAACCACACACTGCCACAGCCTGCAACCAGAGCAGCCATGCTAGTGAGGATCAACACTCTTCTCCAAGGGTAC TCAGGCATTAGATTTGAAATCCTAGAAGCTATCACCAAGCTCATCAACAACAACATCACCCCATGTTTACCACTTCGTGG TACTGTCACGGCTTCTGGTGATCTTGTCCCTCTTTCCTACATTGCTGGTTTGCTTACTGGCCGACAAAACTCCAAAGCTG TAGGACCCTCTGGCGAGGTGATTAATGCCAAGAAAGCTTTCCAATTGGCTGGCATTGACTCAGGGTTCTTCGAATTGCAG CCCAAGGAAGGGCTTGCCCTTGTGAATGGTACTGCTGTTGGTTCAGGGTTAGCTTCTATTGTTCTATTTGATGCTAACGT ATTGGCTATACTAGCTGAAGTTCTATCGGCTATTTTCGCTGAAGTGATGCAAGGGAAACCTGAATTCACTGACCATTTGA CACATAAGTTGAAGCACCACCCTGGCCAAATTGAGGCTGCTGCTATCATGGAGCACATCTTGGATGGAAGTTCCTACATG AAGGCAGCAAAGAAGTTGCACGAGGTGGATCCCTTGCAAAAGCCAAAACAGGATCGTTATGCACTCAGAACTTCCCCACA GTGGCTTGGCCCTCTGATTGAGGTGATTCGATTCTCAACAAAGTCAATCGAGAGAGAGATTAATTCTGTGAACGACAACC CTTTGATTGATGTCTCCAGAAACAAGGCCTTGCACGGTGGTAATTTCCAAGGAACCCCTATTGGAGTTTCCATGGACAAC ACACGCCTGGCGCTTGCAGCAATTGGCAAACTCATGTTTGCTCAATTCACTGAGCTGGTGGATGATCATTACAACAATGG GTTGCCTTCAAATCTCACAGCAAGTAGAAATCCCAGCTTGGATTATGGTCTCAAGGGAGCTGAAATTGCCATGGCTTCTT ATTGCTCAGAACTCCAATATCTTGCAAATCCCGTCACAACCCATGTGCAAAGTGCTGAGCAACACAACCAAGATGTGAAC TCTTTGGGTTTGATTTCTTCTAGAAAAACCTATGAAGCCATTGAGATCCTTAAGCTCATGTCTTCCACATTCTTGATTGC ACTTTGCCAAGCAATTGATTTGAGGCATTTGGAGGAGAACTTGAAACACTCAGTGAAGAGTACTGTCAGTCAAGTTGCCA AGAGGACTCTTACCACTGGTGTTAGCGGAGAACTCCATCCTTCCAGGTTTTGTGAAAAAGATTTGCTGAAGGTGGTCGAT AGGGAAACTCTATTTGCCTACATCGATGACCCCTGCCTTGCTACTTACCCATTGATGCAAAAGCTGAGGCAAGTGCTTGT GGATCATGCGTTAGTAAATGGAGAAAATGAGAAGGACTCAAAGACATCAATCTTTCAAAAGATTGGAAGTTTTGAGGATG AGTTGAAGAGTCTACTGCCAAAGGAGGTTGAAAGTGCAAGGGCTGCATATGAGAGTGGCAATCCAGCAATTCCAAACAAG ATCAATGAATGCAGATCTTACCCACTGTACAAGTTTGTGAGGGAAGAGTTGGGAACTGAGTTGCTAACTGGTGAAAAGTC CAGGTCACCAGGTGAGGAGTTTGACAAACTGTTCACAGCAATATGCCAGGGTAAAATTATAGATCCTCTTTTGGAATGCC TTGGGGAGTGGAACGGTGCTCCTCTTCCAATTTGTTAA
CDS sequence (LotjaGi1g1v0690200.9) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACCAACCACCAACGGCCACCACCAAAGCCAAACCGATTCCATCTTTTGCACTACAGCTAAAACTGGCAGTGATCC CTTGAGTTGGGGTGTAGCGGCGGAGTCAATGAAGGGGAGCCATCTAGACGAGGTCAAGCGCATGGTGGCGGAGTACAGGA AGCCGGTGGTCAAGCTTGGCGGAGAGACCCTGACAATAGCTCAGGTGGCTGCCATTGCCGCAAACGACAGCGTGAGCGTT GAGCTGTGCGAATCAGCTAGAGCCGGCGTTAAGGCGAGCAGTGACTGGGTCATGAACAGCATGAACAACGGCACTGACAG TTACGGAGTCACCACCGGATTCGGGGCCACCTCCCACCGTAGAACCAAAAATGGCAATGCTTTGCAGCTAGAACTCATCA GGTTTTTGAATGCTGGAATATTTGGCAATGGTACCGAGACAAACCACACACTGCCACAGCCTGCAACCAGAGCAGCCATG CTAGTGAGGATCAACACTCTTCTCCAAGGGTACTCAGGCATTAGATTTGAAATCCTAGAAGCTATCACCAAGCTCATCAA CAACAACATCACCCCATGTTTACCACTTCGTGGTACTGTCACGGCTTCTGGTGATCTTGTCCCTCTTTCCTACATTGCTG GTTTGCTTACTGGCCGACAAAACTCCAAAGCTGTAGGACCCTCTGGCGAGGTGATTAATGCCAAGAAAGCTTTCCAATTG GCTGGCATTGACTCAGGGTTCTTCGAATTGCAGCCCAAGGAAGGGCTTGCCCTTGTGAATGGTACTGCTGTTGGTTCAGG GTTAGCTTCTATTGTTCTATTTGATGCTAACGTATTGGCTATACTAGCTGAAGTTCTATCGGCTATTTTCGCTGAAGTGA TGCAAGGGAAACCTGAATTCACTGACCATTTGACACATAAGTTGAAGCACCACCCTGGCCAAATTGAGGCTGCTGCTATC ATGGAGCACATCTTGGATGGAAGTTCCTACATGAAGGCAGCAAAGAAGTTGCACGAGGTGGATCCCTTGCAAAAGCCAAA ACAGGATCGTTATGCACTCAGAACTTCCCCACAGTGGCTTGGCCCTCTGATTGAGGTGATTCGATTCTCAACAAAGTCAA TCGAGAGAGAGATTAATTCTGTGAACGACAACCCTTTGATTGATGTCTCCAGAAACAAGGCCTTGCACGGTGGTAATTTC CAAGGAACCCCTATTGGAGTTTCCATGGACAACACACGCCTGGCGCTTGCAGCAATTGGCAAACTCATGTTTGCTCAATT CACTGAGCTGGTGGATGATCATTACAACAATGGGTTGCCTTCAAATCTCACAGCAAGTAGAAATCCCAGCTTGGATTATG GTCTCAAGGGAGCTGAAATTGCCATGGCTTCTTATTGCTCAGAACTCCAATATCTTGCAAATCCCGTCACAACCCATGTG CAAAGTGCTGAGCAACACAACCAAGATGTGAACTCTTTGGGTTTGATTTCTTCTAGAAAAACCTATGAAGCCATTGAGAT CCTTAAGCTCATGTCTTCCACATTCTTGATTGCACTTTGCCAAGCAATTGATTTGAGGCATTTGGAGGAGAACTTGAAAC ACTCAGTGAAGAGTACTGTCAGTCAAGTTGCCAAGAGGACTCTTACCACTGGTGTTAGCGGAGAACTCCATCCTTCCAGG TTTTGTGAAAAAGATTTGCTGAAGGTGGTCGATAGGGAAACTCTATTTGCCTACATCGATGACCCCTGCCTTGCTACTTA CCCATTGATGCAAAAGCTGAGGCAAGTGCTTGTGGATCATGCGTTAGTAAATGGAGAAAATGAGAAGGACTCAAAGACAT CAATCTTTCAAAAGATTGGAAGTTTTGAGGATGAGTTGAAGAGTCTACTGCCAAAGGAGGTTGAAAGTGCAAGGGCTGCA TATGAGAGTGGCAATCCAGCAATTCCAAACAAGATCAATGAATGCAGATCTTACCCACTGTACAAGTTTGTGAGGGAAGA GTTGGGAACTGAGTTGCTAACTGGTGAAAAGTCCAGGTCACCAGGTGAGGAGTTTGACAAACTGTTCACAGCAATATGCC AGGGTAAAATTATAGATCCTCTTTTGGAATGCCTTGGGGAGTGGAACGGTGCTCCTCTTCCAATTTGTTAA
Protein sequence (LotjaGi1g1v0690200.9) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPTTNGHHQSQTDSIFCTTAKTGSDPLSWGVAAESMKGSHLDEVKRMVAEYRKPVVKLGGETLTIAQVAAIAANDSVSV ELCESARAGVKASSDWVMNSMNNGTDSYGVTTGFGATSHRRTKNGNALQLELIRFLNAGIFGNGTETNHTLPQPATRAAM LVRINTLLQGYSGIRFEILEAITKLINNNITPCLPLRGTVTASGDLVPLSYIAGLLTGRQNSKAVGPSGEVINAKKAFQL AGIDSGFFELQPKEGLALVNGTAVGSGLASIVLFDANVLAILAEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAI MEHILDGSSYMKAAKKLHEVDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNF QGTPIGVSMDNTRLALAAIGKLMFAQFTELVDDHYNNGLPSNLTASRNPSLDYGLKGAEIAMASYCSELQYLANPVTTHV QSAEQHNQDVNSLGLISSRKTYEAIEILKLMSSTFLIALCQAIDLRHLEENLKHSVKSTVSQVAKRTLTTGVSGELHPSR FCEKDLLKVVDRETLFAYIDDPCLATYPLMQKLRQVLVDHALVNGENEKDSKTSIFQKIGSFEDELKSLLPKEVESARAA YESGNPAIPNKINECRSYPLYKFVREELGTELLTGEKSRSPGEEFDKLFTAICQGKIIDPLLECLGEWNGAPLPIC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 13 | 716 | 704 | 0.0 | – | |
PANTHER | 13 | 716 | 704 | 0.0 | ||
Gene3D | 25 | 262 | 238 | 1.2E-94 | ||
SUPERFAMILY | 26 | 716 | 691 | 2.12E-262 | ||
TIGRFAM | 26 | 705 | 680 | 0.0 | ||
CDD | 62 | 526 | 465 | 0.0 | ||
Pfam | 64 | 534 | 471 | 1.2E-152 | ||
ProSitePatterns | 198 | 214 | 17 | - | ||
Gene3D | 263 | 705 | 443 | 1.9E-217 | – | |
Gene3D | 529 | 643 | 115 | 1.9E-217 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
Biological process | L-phenylalanine catabolic process | The chemical reactions and pathways resulting in the breakdown of phenylalanine, 2-amino-3-phenylpropanoic acid. | ||
Molecular function | Ammonia-lyase activity | Catalysis of the release of ammonia by the cleavage of a carbon-nitrogen bond or the reverse reaction with ammonia as a substrate. |
Expression pattern of LotjaGi1g1v0690200.9, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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