Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0697300 |
| Transcript ID | LotjaGi1g1v0697300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein SLOW GREEN 1, chloroplastic; TAIR: AT3G53560.2 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LS48|SG1_ARATH protein SLOW GREEN 1, chloroplastic; TrEMBL-Plants: tr|A0A072U4F2|A0A072U4F2_MEDTR TPR superfamily protein; Found in the gene: LotjaGi1g1v0697300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:126505952..126509649) extracted from Lotus japonicus Gifu genome v1.2.
AAACTTTCCATTTAAAAAACATAAAAAAATGAAAAAAGAAAAGCCCCGTTATTCGCCGGATACATACCCTTGTCCGTGCA GAATCAAATCCTTAGCCCCTACGGAGGAGAGGAGGGTTTTACTGTTACATTTTCCTCATTCCCACTCTCACTCTCACTCT CACTCTCATCCATGGCTTCCCTTCCCAATCTCCGCCCCTCTCCGCTCTCAGCCTCCCTCAACCCCCGCCGTTCATCATTC CCCACTCCCTTATCTTCCTCCCTCTCCTTCACTCCCCAATTCCCCTCCTCCTCCTCCTCGTTCCGGTCACCACCATCCAT CACCGTCAGAGCCTCCTCCTCCTCCTCAAACGACCCCGCCTTTCACAAACCCCCAAACACCGACACCAACAACTTCTCCT CCCTCCCCCCTCTCCTCCAAACCCTCCTCTCCCCCGTCGTCGAAACCACCTGCATCGTCATCGCCGCCACCGCCTTCTTC TTCATGCGCTTCCACCACAACCCCGTCATCGCCGCCCCCCTCACCCCTCCCACAACCATCCAATCCGAAACCACCACCAC CGCCGCCGACGAAGAAGAAGCTGAGCGCGCCATCGAAGACCGCCTCACCACCAACCCTAACGACACCGAAGCCCTCCGCG CACTCATGGAGCTCAAGATCAGAGCTCGCAAGATCGACGAGGCTATTTCCGTCATCGACCGCTTGATCGAGCTCGAGCCG GAGGAGCACGAGTGGCCACTGCTCAAGGCCAACATGCACATCTACAACGACGACCACGATTCCGCTACGAGAATCTTCGA GGATATCCTCAAGAAGGACCCGTATCGAGTTGAGGCGTTTCACGGCCTCGTCATGGCGACTTCGGAGTCCAACGAGCAGT TGAAGGGGCTGCTCAAGAGGGTGGAGGAAGCCACCGAGTCTTGCAGGAAGCAGAAGAGGGATAACGATGTGAGGGATTTC AGGCTCTTGAGTGCGCAGATCAAAGTGATGGAGGGGGATTTCTCTGCGGCATTGAAGGCCTATCAGGAGCTGGTCAAGGA AGAACCTAGGGATTTCAGGCCTTACCTGTGTCAGGGTATCATATATACCCTGTTGAGGAAGAAAGATGAAGCTGAGAAGC AATTCGACAAGTTCCGTAGGCTTGTTCCCAAGAATCATCCTTATAAGGAGTATTTTGAGGATAACATGTTTGCTACCAAG TTTTTCTCGCAGAATTTGGAGAGGGAAGGAGCACGTGCTAGGAGCTGATGAGGGTTTGTGATGATTCTGGAGGCTTCTGC AATGAGGTCCGAATGAGTTTTTGTTCATTTTCTGTTACTGCACTTTAGCCCTTCAGTTAAATGCTTCCAGATAGTAGTAG TAAACATGGAGTTAATGTAGGTGATGAGTTTGTCCAGTTTTTCTTAGTTATGGTGATGAAAATTGTTGTTGGAATGGTTG GTTTATTCTGGTGGATATATAGTACTAGTGTTAATGAAGAGAAGCTATTTTGATGCTGGAAAATCAAACAGGTGCATTGT TCCGGTATCATGTAATTTGGATTCTAATCCGAGTTAAATTTCTGCCTAATATAGTAGATAGCTGGATAGCTTTCCTAAGA AGCAATTTTGAAAAATAGTCATTCAGTTGATAATTACATATTGTTTGTCTGCTGCACTTTGTTGATGTTATTATTGTTGG AAAATTTCGGAATGGATTGGAAATGGATATTTTGTTGCAATTTGCGTGTGTTTACAGTGAAGTTTTGGTTGTTGAATGTT ATGCAATCACATTTTGACATTGTTGGGAAAGTCTCAATTAATTCCATTTTCTATGGGACTACAAGTCTACAAGTACAACA ATAAGATTATATCATGTTATACTAATTCTTGTCTGGCACTCTAATGATGGCTCTACTAGCTTAAATCTGAGTGGTGGATA TAAACTTATCTACTCTGCGACTTGTTATATCTGCCTCAAAATTTTCCATGCTGAATATTATCAAATATACTGAAGAATTT GTTCATGTTTATGATATAACTAGAAGCTTCCTCTCTTTTTTTTCTAAGTTCTCGTATGTATCTTTAAAATTTTATAAGTG TGTCTATAGAAGTACACTTCCATCAATGTGATAGAGTAATATGACTGTTTAGGCTATTTGATCTTTTGTCTAAAGGTATC TTGTGTAATTTCATAGGATATAATATTTAATTCTTGTCATGATTCATTAGGTGATGAACGCTGCTATGGATCTGTTTACA AGCATTACCTGGTCTGGCTAATTCATCTGCTTCCTTGAAGGAAGTCTGATATTAGCCAGACATAAATATTTTCTGAAGGT TCTCAGCTTCCATGGTGAATTTGCTGGTTTGTAACTGCATTTATATTTCTAGTGAAAGCAGATATACAGATATGCCGGAT TTTTCAAAATTTTATGATTACTACTTGAGTGAATTTAGGTTGAATTGATTGGGCAGCTCCTTGTCCCTGCACTGAAAAAA GAAGACAAAAACAAAAATGAATAATTATATGTTAAAAGAGTGTACTGATAGTTTCACAACTACTATGGAAGTATGAATTA ATTACAACTTCTGCAGAACTTATGGCTTTAAACCTGCTTTGGTTGTCTGTTTTTTATATGTAAGCCTGCTTGTTTGTCTG AATCTATAGATCTAGATGACTTCCACATGTATTTTCTTAACCTGGCATTAATGCATTATCAAATATCAATGCCTGTACCT GGGATCTCTTACCCCTGGTTTATTATGTATGATCTTGTTCAATGCCTATTGTCATTCTCACTTGTTGCTTGAAAACTGCA TAAGCATGTCAGTCGAAGTGCACTTCCATTGATGTTATAGACTTATACTGCAATTTGTCCTGTTTAGGCTATGTGATATC TTGCCTTTAGATGTATTCATTAATATTAGACTATTAGTACCACAGGGTGCACTGTTATTTTCACGACTAATATCAAAGTA TGAGTCGATGTCAACTCCCGTGGCACTTATGATTTAGTCCTAGTTGATCGAATGCTGCATGCCAATTTGTAGATGAGTCT TTAGATCTAGAATTCTTGTGCATGTATTTTCTTAGTGTGGCATTTTATTGTTTATGCCAGTATGCATGTGGTCTTTTGCT CTTTGTTTTATCATGTGTGACTGTAATTACAACACTTTCTGATTGAGAAATAGCTTAGCACCTAGCCCGGAGCAGTGTGT TTCAGACTCAGACGACGGGTGAAAATAGTAGAATCTTGGTTCAATTCTTGTTACTGTAAGACTCAAATGGGTGTGTGTAG GTTTGATTGGGAAATTTTAAGTTTTTTCATTTATTTCTGTTAATGGAAATTTTAAGCCTTTTTTTTTGTCCTTGGAAAAT TTAAGCTTGAATATGTTTCTTTTTTATTTTGGCCTTTAAGCCTGCATATGTTTGGGCTGGCAAATTCTTTTGTCAAGAGA TTAAATTAAGGCCTGTGGCCAAGGCAAACAACCTTTACAAATCGATGGTAATTGAATCGTAACTAAACAACCCTTGAATT TGACCAAAAAAAAAACTTGAATAATTGAAACCTAACTAAAAGGGATGCAACGGAGTCCCATAAAAAAATATACAAAACAA GTCTGCTTAAACAATTGACAACAGAACAAAATTACTCAGCACCACAACACCAGATGAAATTATAATAATTTTGGCAAATC AAGAATTCAATATTTGAT
CDS sequence (LotjaGi1g1v0697300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCCTTCCCAATCTCCGCCCCTCTCCGCTCTCAGCCTCCCTCAACCCCCGCCGTTCATCATTCCCCACTCCCTT ATCTTCCTCCCTCTCCTTCACTCCCCAATTCCCCTCCTCCTCCTCCTCGTTCCGGTCACCACCATCCATCACCGTCAGAG CCTCCTCCTCCTCCTCAAACGACCCCGCCTTTCACAAACCCCCAAACACCGACACCAACAACTTCTCCTCCCTCCCCCCT CTCCTCCAAACCCTCCTCTCCCCCGTCGTCGAAACCACCTGCATCGTCATCGCCGCCACCGCCTTCTTCTTCATGCGCTT CCACCACAACCCCGTCATCGCCGCCCCCCTCACCCCTCCCACAACCATCCAATCCGAAACCACCACCACCGCCGCCGACG AAGAAGAAGCTGAGCGCGCCATCGAAGACCGCCTCACCACCAACCCTAACGACACCGAAGCCCTCCGCGCACTCATGGAG CTCAAGATCAGAGCTCGCAAGATCGACGAGGCTATTTCCGTCATCGACCGCTTGATCGAGCTCGAGCCGGAGGAGCACGA GTGGCCACTGCTCAAGGCCAACATGCACATCTACAACGACGACCACGATTCCGCTACGAGAATCTTCGAGGATATCCTCA AGAAGGACCCGTATCGAGTTGAGGCGTTTCACGGCCTCGTCATGGCGACTTCGGAGTCCAACGAGCAGTTGAAGGGGCTG CTCAAGAGGGTGGAGGAAGCCACCGAGTCTTGCAGGAAGCAGAAGAGGGATAACGATGTGAGGGATTTCAGGCTCTTGAG TGCGCAGATCAAAGTGATGGAGGGGGATTTCTCTGCGGCATTGAAGGCCTATCAGGAGCTGGTCAAGGAAGAACCTAGGG ATTTCAGGCCTTACCTGTGTCAGGGTATCATATATACCCTGTTGAGGAAGAAAGATGAAGCTGAGAAGCAATTCGACAAG TTCCGTAGGCTTGTTCCCAAGAATCATCCTTATAAGGAGTATTTTGAGGATAACATGTTTGCTACCAAGTTTTTCTCGCA GAATTTGGAGAGGGAAGGAGCACGTGCTAGGAGCTGA
Protein sequence (LotjaGi1g1v0697300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASLPNLRPSPLSASLNPRRSSFPTPLSSSLSFTPQFPSSSSSFRSPPSITVRASSSSSNDPAFHKPPNTDTNNFSSLPP LLQTLLSPVVETTCIVIAATAFFFMRFHHNPVIAAPLTPPTTIQSETTTTAADEEEAERAIEDRLTTNPNDTEALRALME LKIRARKIDEAISVIDRLIELEPEEHEWPLLKANMHIYNDDHDSATRIFEDILKKDPYRVEAFHGLVMATSESNEQLKGL LKRVEEATESCRKQKRDNDVRDFRLLSAQIKVMEGDFSAALKAYQELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFDK FRRLVPKNHPYKEYFEDNMFATKFFSQNLEREGARARS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 21 | 21 | - | – | |
| MobiDBLite | 1 | 75 | 75 | - | – | |
| Phobius | 1 | 84 | 84 | - | – | |
| MobiDBLite | 6 | 75 | 70 | - | – | |
| PANTHER | 20 | 351 | 332 | 1.3E-111 | – | |
| PANTHER | 20 | 351 | 332 | 1.3E-111 | – | |
| Phobius | 85 | 105 | 21 | - | – | |
| Phobius | 106 | 358 | 253 | - | – | |
| Gene3D | 124 | 339 | 216 | 1.9E-24 | ||
| SUPERFAMILY | 133 | 326 | 194 | 3.41E-17 | ||
| ProSiteProfiles | 133 | 328 | 196 | 18.356 | ||
| ProSiteProfiles | 152 | 185 | 34 | 8.555 | ||
| ProSiteProfiles | 186 | 219 | 34 | 5.458 | ||
| Coils | 234 | 257 | 24 | - | – | |
| ProSiteProfiles | 261 | 294 | 34 | 7.198 | ||
| ProSiteProfiles | 295 | 328 | 34 | 7.552 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0697300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…