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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0704400 |
| Transcript ID | LotjaGi1g1v0704400.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pre-mRNA-processing factor 39; TAIR: AT1G04080.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q4KLU2|PRP39_XENLA Pre-mRNA-processing factor 39; TrEMBL-Plants: tr|G7KXF7|G7KXF7_MEDTR Pre-mRNA-processing factor 39; Found in the gene: LotjaGi1g1v0704400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:127255955..127260293) extracted from Lotus japonicus Gifu genome v1.2.
ATGCTTTGTGTTTTCCTTATGTTCTATATTCTTGATTTTTGCTTGTGTATATATATCATAAGGGACATTTTTTACGATAT TTTTTTGTTGTGTGAATCAGATTGTCAAGTTGTATGAGAGATGTGTGATTGCATGTGCCAATTATCCTGAGTACTGGATA CGCTATGTTTTATGTATGGAAGCTAGTGCAAACATGGATCTTGCAAATAATGTGCTTGCTCGGGCAACCCAAGTATTTGT GAAGGTAATTTCATTTAAATACTAAAGCTGTAGGGCTGGAAATCATTTGCAACATTTTAACTTATCTTCTTCCCTCGAGT TTTTAAGCATTGAAGTGAAAGGGCTTCATATATAGTGGACTCTGGTACTATTTTCTGCTGTACCAAAAAAAAAGTGGACT CTGGTACCTAGCCACTTGTTGCTATGTTGCTTTTTACTCAAGCTAACTACTGGACTCCTACTGAGATAATAGTTAATGGA ACTTGAATTTGTTTGATGTTGTACCTTAATTATCTTGTTTGTTTGCCATAATGCAGAGACAACCAGAGATACATCTATTT TGTGCTCGGTTCAAGGAGCAGGCGGGAGATATAGCTGGTGCTAGAGCTGCGTATCAACTAGTGCATACTGAAACTTCTCC TGGTCTTCTTGAAGCAATAATAAAACACGGCAATATGGAATATCGACTGGTATGCCGACTTATGCAAGTGTTAATAGATT GTGGCTTAATTTAAGTTAAATAGCTTAACACAGCATTTCTATTCCTTGATAATTATTACAGGGTGAGTTGGAGGATGCAT TCTCGTTGTATGAACAGGCTATTGCCATTGAGAAAGGAAAAGAACATTCACAAACATTGCCAATGTTGTTTGCTCAGTAT TCTCGATTTGTTTATTTGGTATGTTTGACTACAGATTTGTGTCCAAATGTCCTTCTGGTCCTTTGTTCTTAATTCATGCT TGTCATTGGTTGAATATGTATTCTAATTTTTTGTTGGCTTTGTTTCATCAATTTATACGTATATTTTAATTTTAAGTTTT CTCATTGGTTTTATAAGATGATACTTACAGTTGCATTGATGAAAGTTGGCTACATTTTTTGTTAAGCTGTCTGCATTCTG TTAAATGATAATGATCTTGGGCGTAATGTGCTTCTCATTTATGTCAATAAATAAAGCATGCAAATGGCTATTGAAAAGAA ATATGAATCATAACTTAAAATTTAGCATGACTATTCTTTTATGTTCGAACTGTTTTAGTTTTAGCCCTCCGGTTGTGTTA CTATATTGTACTGTGTTGTGTGGTAATTGTCTTCCGTTTTTCTTGATATCCTTCTGTATCGTTTTGCCATCAGGCTTCTG AGAATGCAGAAAAAGCAAGAGAGATTCTAGTTGGGGGGCTTGAAAATGTTTCTTTGTCTAAGCCACTACTTGAGGTCAGT CCCTACCTCTTTAACTATAAATGGGTTTTAACTTTCCTTACGTGATACTGTTGGAGATTCTTCTCTTTTTTAATTCCATG TTCTATACAGGCTTTATTGCATTTTGAGGCTATTCAACCACAGCCTAAGCGAGTTGATATGGACTTTCTGGAGTCATTGG TTGTCAAATTCATAGTGCCCAATCCAGAGAGCCCTACTGTAGCAAGTGCTGCAGAGCGTGAGGAACTCTCCAGCATTTTT TTGGAGGTGATTCCTTATAATAAGGATGTTTAAATGAGTTTCCTTGAGGAAGAAAATATTTTATTGCGTGTGACTGTGTT TTTTTTTTTTATAATTGTCCCATGGAAAGACCCTCTGAATGCTTATTACCAAAAAATTTGTTTTTGAGAATCCAGCTGGG TTGATTGTTCCATGGAATTGGTTCTATTGAGTAGGTTAAGGCTAAGTTGATATGATAGAGTATTGTAAGGGACACTTCAC TCACATCCCATTAAACAAATAAACAACCTATTAAAACAATCTACCTATACCTAATCAATGGTTGTGGCAGGTGTGAATCA TGATCTATAGTTAGATAGTTATATGGTTAATGATGGGTAAATTTTGGCTAAATAAAGTGACCCAGATGACATGCATGGAT GGTCAAATTGGTTTTAGTTAACTTTAACCTTGACTATCCATGTTAGATTGGATGGTCAAGGTTAGCTACTTTCATACTTG ATATGCTTCCAGTTGATATGTAACTTAGCTGTTTGAACTGATTCCATAGAAAAAAAATTCGTGTGTATCTTGTTATAATT AGTTACTCTGACCTACTTTTAATAAGATTCTGAAATGATTTAACATTTTAGGCTGTGCTGATTCATTTATGTATTGGGTT ATAATAAGCTAAAAGGGTGTGCAGACAATTTAGCAGTGACGAAATGTTTCAACTTCCCTAAGTTTTACCTTTGTTTCTAC GAACACTCTTGCAAGTTGCAATGCTGATAGATTTTTAATAGCTTCATCAAATATGCATGTGATTGGTCGTATATGTCTTC GTATTGTTTGGTTTTATTTTTAACAGCCTTAATTTAATACATTTTCTACATGGTACACCTATTTAATGGTTTTTATTCTG ATTTCCAAAGACCTGTGATGTCTGAAGATTGTGTCTCTTACCCATGGACTTTCTGTTGACTTTCCAGTTTTTAAATCTCT TTGGAGATGTTCAATCTATCAAGAGGGGCGAGGATAGGCATGCCAAACTTTTCTTGCCACATAGGAGCATGTCGGAGTTG AAGAAACGTAGTGCAGAAGATTTCTTAGCTTCCAACAAAACTAAAGTCTCAAGAACTTATTCTGTTCAGTCACCTGCTCA ATCTGTGATGGGTGCATATCCCAATGCACCGAACCAATGGACTAACTATGGAGCACAACCTCAAACTTGGCCAGCAGTCC CACAAATACAAGGACAACAATGGCCTGCTGGCTACAACCAGCAGGTAGATTATCGTTTTCTTTATTTGCTACAACCTGGA AGAAATTGTTTTACATTTTAGCAAGTCTTTCAAACAATGCAATGTTAAACCACTTCTGTGTCACACTTACTAATTAGTAA GTAGTAATTGTTCAATACTAACCACTTCTGCAGTTGTAATTAAAAATGGACGTGGACACCCAAGATGCAACACATTTCTA TTCCGTTGAATTGGAATTTCTGCTTCATAAATTATGATGAAATGGGTTGACTGCTCCTTTGATTTAAATATACCTTGTAC CCACATAAGACATCTTCCTGCATCTTTATTTACATGTCAAGAATGTGCTTCATTTATGCTATAAGCTTTACAGTACTGAA ATGTCATATATTCATATCGTTGTTCAGGAGTAAACAATTTTTGTACTTGTGTTATTTGTTTGTCATGGTTTATGTGTGTA TTCTATTATATGTACTTACATATGCAATGCATTGATGAAGGTGTTACTTTTAATCCATTATTTAGTTGCTTTTTAACTGA AACTTTTGTGGTCATTTTTGTCATCATTTTATCCCCTTTATGTACTGGTCGATGAATTCATATGTTTCTAAGTGATTCAT TCTGATTTGATGCAGGCTTCCTATGGGACTTATCCTGGATATGGGGGCAACTATGCAAACCCGCAGTTGCCTACGTCAGT CCCACAAAATACTGCTGCATACGGAGCTTATCCTCCTGCATATCCTGTACAGGTATAAAGCAGCTTCAGCTCTTCAGTTA TAGTGATTATTTGGCCCGATATGTTCTGTGATCAGTGGTTTCTACAGTTGATTATTTCCCTACCGTAGAGAATCTCTTTA AGCATCATAGTTTAACTGCACGAACACTTGTTATGCATTACTCCCTCCGTTCCACAAAGTTTGTTGTTTAAGGTTGTGGT ACAAAGACTAAGATGACAATTATTAATAGTATAATGTTACTATAGTACCATTATTTAATTTTACTAGTACTAAGTGCAAC AATTAAATTTTACTTGAATAGAGAAGAATCTAGTTAATAGAGAAGAGTTGTAGTTGGTTGATATGAGAGGTGATAAGTGA GAAAATTTATTAAATGAGGGTATAGTTGGAAAAAATTAGCAAAAAATGCATTGGTTTTCTAAAACAACAAACATTTTGGG ATATTAAAAGAAGGTCTAAAACAAACAAACTTTGTGGAACGGAGGGAGTATTTCGCAGTTGATATCTGACTTTTCTAACT CTGGCTGTTTCATTTCTAAACATTCTGCTGATGCTGAGCATTCCGATTTGTATCTAATGTTGATTCTTGTGCCTGAATTT CAGCCTGCAGTTCCTCAACAGACTTACGTACAACCTGTCGCAGCTCCTACACAGCAACCCGCTGCAGTTCCTCAGGCCTA TTACGGGAGTTACTATTGA
CDS sequence (LotjaGi1g1v0704400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGCTAGTGCAAACATGGATCTTGCAAATAATGTGCTTGCTCGGGCAACCCAAGTATTTGTGAAGAGACAACCAGA GATACATCTATTTTGTGCTCGGTTCAAGGAGCAGGCGGGAGATATAGCTGGTGCTAGAGCTGCGTATCAACTAGTGCATA CTGAAACTTCTCCTGGTCTTCTTGAAGCAATAATAAAACACGGCAATATGGAATATCGACTGGGTGAGTTGGAGGATGCA TTCTCGTTGTATGAACAGGCTATTGCCATTGAGAAAGGAAAAGAACATTCACAAACATTGCCAATGTTGTTTGCTCAGTA TTCTCGATTTGTTTATTTGGCTTCTGAGAATGCAGAAAAAGCAAGAGAGATTCTAGTTGGGGGGCTTGAAAATGTTTCTT TGTCTAAGCCACTACTTGAGGCTTTATTGCATTTTGAGGCTATTCAACCACAGCCTAAGCGAGTTGATATGGACTTTCTG GAGTCATTGGTTGTCAAATTCATAGTGCCCAATCCAGAGAGCCCTACTGTAGCAAGTGCTGCAGAGCGTGAGGAACTCTC CAGCATTTTTTTGGAGTTTTTAAATCTCTTTGGAGATGTTCAATCTATCAAGAGGGGCGAGGATAGGCATGCCAAACTTT TCTTGCCACATAGGAGCATGTCGGAGTTGAAGAAACGTAGTGCAGAAGATTTCTTAGCTTCCAACAAAACTAAAGTCTCA AGAACTTATTCTGTTCAGTCACCTGCTCAATCTGTGATGGGTGCATATCCCAATGCACCGAACCAATGGACTAACTATGG AGCACAACCTCAAACTTGGCCAGCAGTCCCACAAATACAAGGACAACAATGGCCTGCTGGCTACAACCAGCAGGCTTCCT ATGGGACTTATCCTGGATATGGGGGCAACTATGCAAACCCGCAGTTGCCTACGTCAGTCCCACAAAATACTGCTGCATAC GGAGCTTATCCTCCTGCATATCCTGTACAGCCTGCAGTTCCTCAACAGACTTACGTACAACCTGTCGCAGCTCCTACACA GCAACCCGCTGCAGTTCCTCAGGCCTATTACGGGAGTTACTATTGA
Protein sequence (LotjaGi1g1v0704400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEASANMDLANNVLARATQVFVKRQPEIHLFCARFKEQAGDIAGARAAYQLVHTETSPGLLEAIIKHGNMEYRLGELEDA FSLYEQAIAIEKGKEHSQTLPMLFAQYSRFVYLASENAEKAREILVGGLENVSLSKPLLEALLHFEAIQPQPKRVDMDFL ESLVVKFIVPNPESPTVASAAEREELSSIFLEFLNLFGDVQSIKRGEDRHAKLFLPHRSMSELKKRSAEDFLASNKTKVS RTYSVQSPAQSVMGAYPNAPNQWTNYGAQPQTWPAVPQIQGQQWPAGYNQQASYGTYPGYGGNYANPQLPTSVPQNTAAY GAYPPAYPVQPAVPQQTYVQPVAAPTQQPAAVPQAYYGSYY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 335 | 335 | 1.4E-90 | – | |
| PANTHER | 1 | 335 | 335 | 1.4E-90 | – | |
| Gene3D | 1 | 253 | 253 | 2.0E-26 | ||
| SUPERFAMILY | 6 | 219 | 214 | 3.5E-22 | ||
| ProSiteProfiles | 61 | 94 | 34 | 9.496 | ||
| ProSiteProfiles | 61 | 94 | 34 | 8.349 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0704400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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