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LotjaGi1g1v0706800.1

Overview

Field Value
Gene ID LotjaGi1g1v0706800
Transcript ID LotjaGi1g1v0706800.1
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Phytochelatin synthase; TAIR: AT5G44070.1 phytochelatin synthase 1 (PCS1); Swiss-Prot: sp|Q2QKL5|PCS3_LOTJA Glutathione gamma-glutamylcysteinyltransferase 3; TrEMBL-Plants: tr|I3S9J9|I3S9J9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0706800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:127525086..127530006) extracted from Lotus japonicus Gifu genome v1.2.

CATTCATCAGCATAGCCGCTTACAAAAGTTGCACATTCCTCAACACAGCTCTCGCAAAACCGGGTGGTCGCAGAAGTGGA ACATCAAACTTTCCGTCTTTACCAACTTGGCAAACAATGTCTTGTTGGTAGAATCTTATGCCAAGATACTCCACTTTATT AGGAGAACACTGTTCCACCATGTGAGTCCACAAGTAGCGTGATTGGAACGAACAACGAGAGGTTCAGAGCTGGTTTTGCA TTGCATACCACCATGGCAAGCGCTGGTTTATACCGCAGAGTCCTCCCTTCTCCGCCTGCCATCGATTTCGCTTCGCCGGA AGGCAAGGTTTGGTCAACTACAACAACAACATCACTCTTCTCTTCTCATCATTCCAAATCCATGAAACTGTGAATGCAAT GCAATGCTATGCCCACAAATGAATTGAATTGATTTTTTTGAATTTGCAGAAGATCTTTGTTGAAGCTCTTGGTCAAGGAA CAATGGAGGGTTTCTTCAAGCTAGTATCATACTACCAGACACAATCAGAACCTGCCTATTGTGGTCTTGCTACACTTACT GTTGTCCTCAATGCTCTTTCTATTGACCCTGGTAGGAAATGGAAAGGTATGTTATTTCCTAATCCTTCCCCTAATACCCT TTTGATTTTTTTTAATGTTTTTCATAAAGGGTATGAGAAAAAATGGTAAAAATTTGAACTTGCTTAATAGGGCCTTGGAG ATGGTTTGATGATTCCATGTTGGATTGCTGTGAGCCCTTGGAGAAGATTAAAGTTCAAGGCATTACTTTCGGAAAAGTTG CGTGCTTGGCTCGATGTAATGGAGCTCATGTTGAGGCTTTTCGATCCAATGAGAGCACTGTCAGTGATTTTCGTGACCGT GTGATTTCGTGTTGTTCTTCTGAGGATCGTCATTTGATTGTGTCTTACCACAGGTCAGGGTTAAAGCAGGTGTGTTGAAC AAGACCTTTGGTTCCTGTTGTTTGTTCTGTTATCTGTTCCTAAGTTTTGACTAATGTAGTAGACTAGTAGTAAGCATTCA AATGCTGCTTCTTCAACCTTTGAATTGTAGACATTTTATATACAGATTACAGATGCACAGGTTGTTGTTTAGGAAATGGA AAGCCAAATGAGTTTTTAGAAATGATGAAAATTTGTGATGTTGAATAACAGACTGGAGAGGGCCATTTTTCACCTATTGG AGGATATCATGCTGAGAGGGATATGGTACTCATATTGGATGTCACTCGTTACAAATATCCACCTCACTGGGTTCCCCTTA CCCTTCTCTGGGATGCCATGAATACCATTGATCGAGCTACTGGACTTCAGAGGGGGTAAGTTCTCATACATTGTTAATTA AAGTTAATAGTGTCTCATACAATTTCATAAGCACTATGGGGCCTTTACTCTTGTTTCTCTCAGATATGCGGTGTTTCCTT TTGCCAAAACTAAATATTGCTATACCTCGTGATCCTAAGTATTAGAAAATGGCAATGTTTTACTATTTATAACATGTTCA TCTTATTGATTTTCTTTTTTTAATTGAAGTTTATAAACTTTTCAAGAATAGTTCTTGGCATTCATGATATGCTATAAAGG ACTAAACTACTATTCATGCCCTAGTGTATTGACATTAAACAGAAGAAATCAGAAAAATAAAACTCTGATGATTGTTGTTT AAAATTATGGTATTTCAGGTACATGATTATTTCAAAGCTTAAGAGGGCTCCATCGATACTTTATACTGTGGTATTGTACT AATGGTTTATTCTTTGTCAAACACTCAAACCATTGTAGAACATAGATTAAGTTTCTAAATTCATGAATTTCAAATAGAGG GAAAAGTAATCCGACTCACTGTAAAAGATCATGTTTAAGTCAGCTAGAAGACAGTTTTTTCTCCTTTAGTTCTGTTGGAC AATAAAAAGTCTTAGCACCGTAGATCATGTTAAAGGAATGGAGTGTCATTAGGAGGACTGGGATTCTGCCCCCTTTTCTC TCCTCTTTTCCCCTCCCTGCAGGAACTGTAATGGTTGAACTTGTGTATTATTCTATGTTAACCAGAGCTTGTAATTTTTT ATGGTTATTTTGTTTATGCTTCATGCAAATCACCAGCCCTTGAATATTATAGTAAAACTTACTTTAGACTACTTACAGAG TTGTAGACATGAAGGTTGGAGCAGTGTGGCCAAATTTCTAACTGAGAATGTGCCTCTCCTTCTAAAGTCAGAGGATCTAA AAGACATTCAGGAAGTACTCTCTGTTGTCTTTAAATCCCCTCCTAGTGAATTGAGAGAGTTCATCACATGGATTGCTGAA GTTCGCAGACAAGAAGATGGGAATCTCACATTGAGTGAGGAGGAGAAAGGAAGGCTAGCTATCAAGGTTTCGAAACTACT TCCTTTTCCATTTTGGGAAGAAAAATCATTTCACTCTTGAATTTTTTAAATGTGCCATTTATGTCATCTTAGACTTCATC TCATTGAAGAAAATCCCATAAATGAACAACCATAATTTTTAAGAGCTCTGAAATTTCAGGCAGACATACTGGAACAGATT CGGACAACTACGCTCTTCAAACACGTGACCAGTTGGTTGGATTCACAACGGTCACGTTGCAGAACTATTGCAAAACTTCA AGATAGAGATATGCTACCAGAACTCGCTGCAGGTGTTTGCTGCCAAGGGGCGTGTCTTTTAACTGGTTGTTGTTTGCCAG GTGGAAAATGCTGTAGCCAAATAGATGTGAAACATCTGAATGTTGATCATAAAAATATAGTAACATTGGTTTCTGGAACT GTTGCCTCTGGTAGCAGTAGTGAACAAGGAGTTGATGTGTTGGTCCCCTTGTGTCAAATGGGGCCAGAAGGTCACTGCAT TGGAATGCATCCATCTACTGCTGATGTCTTAACGGTGCTTTTGCTAGCCTTGCCCTTGCACACATGGTCAGGCATTAAAG AAGAGAAGCTGTGTGCGGAAGTTACCAGCCTTCTAACAACTGAAAATCTCCCTCCCTTACTTCAGGAAGAGGTACGGTTC TCTTTAGAAACAGTTTTGTTTTAATCTAAAAGTTGAAAAACTACTAAAAAATATCTTGATGAAAATATGGAGAACGAAGG ATTAACATGTGGTGATTTTGTGCTTAAAAATGTGGCTATCTTCATGGTAAATATTTTATAAGGAATTCATTTTTTTATTA TTTTCCCTTAAAAATTCTCATGTACTCCCTCCGTTCCAGAAAGTTTGTTGTTTTGGACAATCTTTCGATATCCCAAAATG TTTGTTGTTCTAGAAAACCAATACATTTTTTGCTAATTTTTTCCACCTATACCCTCATTTAATACATTTTCTCTCACTTA TCACCTTTCGTATTTAAGTTAAAAAGATTAACATGTTTGAAATATTCATTTTTAACTTGAATAATAATAACATGCTTTCG AAACTTTAGCATGCACTTCACCTTCACTTGAATCCATCCAAGCTCATAAATGGTGGAATTGTTAATAATTTAGGTTTAGA TTAAACTGTCAATAAAAAGGTCTTTACCATTTCATTAATATATATATATACACACACACACATATATATATTTGGCCCAT AATTCTTCAAGAGTAATTGCTATTTTCAGTACTCTATTTTTTATTGTTACAACCAGATTTCATAATGCATTTCACTTTTT AAAATTTTACAGTTATGCCAAAATTACTAGACTAGAACTTATACTACATGGTTTTAGTGAAAATTTAATTTTTGGTAGAG TATAATGGAGCTTGATTGATCCCTTGTCCAATCAATTGAGATCAAGGCTTCATGGTGGCATATTGCGCCTAGCCGCCTAA TGCCTAATCGCACTATTGGTAGTTTGAAGGAAAATGTTATTGTAAATTGTAATACTTACTGGCTAAGTTGATATCATGAG TCAGTGATAATACTTATACTATTCATTAAACAGGTTTTGTTCTTGCGAGAGCAACTCCATTTTCTCATGACGGATATTGG TGCTCCTCCTCACTGATGATGCTCTTGGTTTTGGCATATGTAATGGGTTCCAATATTAGAACCTGCTTTAGCATCAGTTA TGTCATTGAACTTGGGATCAGGACATGTGCATTGTTTGTCATGTTTTATATTTGTGCAAGGAATTTGGAGGACTATATAA AGTTAATTGTTTGGAGATTGAAAAATTGGAAATTGCTGGAAGATGGGAATTAATCAAAAGGCTGCAGGACCTAGCGATCA TGGCCCTTTAATGTGATCCTAGGAGCATCCTATTCTTCTCTGATATTTCTCTTTTGAAAAATGTATCACGAGAAGTTAAT GTAATAAAAAAATTCCCTGTTTGGTTTCCTTACCTATATCATGATGCATTTGATCAATATCCATATTGTTGCCCATTAAG ATATCAGCTGTTATGTTGCAAGCTTTCTTGACAATGTATTCAAACTTAGTCCAGTCGTTGATGCATCAATAGGTAGAGGA ATTTGAGGAGAGAATTTGGGAGGAGAGGTTTTTAGTAGGATTTATGTGGATGTTTAGTAGTGAGGGGGAAATGATGGTGG AATGGAAAAGAATATTATCCACACAATTTCTTGTGAATTTGAGAAGATAAGTGAGAAAACTTTGTTTTTCTTCTTTCATG TCTTAGGCCCCGTTTGGAAAAACAGCTTAATTAAGCACTTATGGTCATAAGCGCTTATGACATAAGCGCTTATTCATAAG CTATTTTTGAAAATTTATTGAAATAAATTAAAAATAAGCTGTATATAAACATAAGCTGTTTTTCATAAGCTATCCTGAGT AACTTATGAAAATAAGCTGAAAATAGCTTATGGCAGGTCATAAGTTGTTTGCATAAGCTCTCCCAAACACTGGCATAAGA GTTTATGCTGTCAGATAAGCTCAAATAAGCTCTTCCAAACT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0706800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAAGCGCTGGTTTATACCGCAGAGTCCTCCCTTCTCCGCCTGCCATCGATTTCGCTTCGCCGGAAGGCAAGAAGAT CTTTGTTGAAGCTCTTGGTCAAGGAACAATGGAGGGTTTCTTCAAGCTAGTATCATACTACCAGACACAATCAGAACCTG CCTATTGTGGTCTTGCTACACTTACTGTTGTCCTCAATGCTCTTTCTATTGACCCTGGTAGGAAATGGAAAGGGCCTTGG AGATGGTTTGATGATTCCATGTTGGATTGCTGTGAGCCCTTGGAGAAGATTAAAGTTCAAGGCATTACTTTCGGAAAAGT TGCGTGCTTGGCTCGATGTAATGGAGCTCATGTTGAGGCTTTTCGATCCAATGAGAGCACTGTCAGTGATTTTCGTGACC GTGTGATTTCGTGTTGTTCTTCTGAGGATCGTCATTTGATTGTGTCTTACCACAGGTCAGGGTTAAAGCAGACTGGAGAG GGCCATTTTTCACCTATTGGAGGATATCATGCTGAGAGGGATATGGTACTCATATTGGATGTCACTCGTTACAAATATCC ACCTCACTGGGTTCCCCTTACCCTTCTCTGGGATGCCATGAATACCATTGATCGAGCTACTGGACTTCAGAGGGGGTACA TGATTATTTCAAAGCTTAAGAGGGCTCCATCGATACTTTATACTGTGAGTTGTAGACATGAAGGTTGGAGCAGTGTGGCC AAATTTCTAACTGAGAATGTGCCTCTCCTTCTAAAGTCAGAGGATCTAAAAGACATTCAGGAAGTACTCTCTGTTGTCTT TAAATCCCCTCCTAGTGAATTGAGAGAGTTCATCACATGGATTGCTGAAGTTCGCAGACAAGAAGATGGGAATCTCACAT TGAGTGAGGAGGAGAAAGGAAGGCTAGCTATCAAGGCAGACATACTGGAACAGATTCGGACAACTACGCTCTTCAAACAC GTGACCAGTTGGTTGGATTCACAACGGTCACGTTGCAGAACTATTGCAAAACTTCAAGATAGAGATATGCTACCAGAACT CGCTGCAGGTGTTTGCTGCCAAGGGGCGTGTCTTTTAACTGGTTGTTGTTTGCCAGGTGGAAAATGCTGTAGCCAAATAG ATGTGAAACATCTGAATGTTGATCATAAAAATATAGTAACATTGGTTTCTGGAACTGTTGCCTCTGGTAGCAGTAGTGAA CAAGGAGTTGATGTGTTGGTCCCCTTGTGTCAAATGGGGCCAGAAGGTCACTGCATTGGAATGCATCCATCTACTGCTGA TGTCTTAACGGTGCTTTTGCTAGCCTTGCCCTTGCACACATGGTCAGGCATTAAAGAAGAGAAGCTGTGTGCGGAAGTTA CCAGCCTTCTAACAACTGAAAATCTCCCTCCCTTACTTCAGGAAGAGGTTTTGTTCTTGCGAGAGCAACTCCATTTTCTC ATGACGGATATTGGTGCTCCTCCTCACTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0706800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASAGLYRRVLPSPPAIDFASPEGKKIFVEALGQGTMEGFFKLVSYYQTQSEPAYCGLATLTVVLNALSIDPGRKWKGPW RWFDDSMLDCCEPLEKIKVQGITFGKVACLARCNGAHVEAFRSNESTVSDFRDRVISCCSSEDRHLIVSYHRSGLKQTGE GHFSPIGGYHAERDMVLILDVTRYKYPPHWVPLTLLWDAMNTIDRATGLQRGYMIISKLKRAPSILYTVSCRHEGWSSVA KFLTENVPLLLKSEDLKDIQEVLSVVFKSPPSELREFITWIAEVRRQEDGNLTLSEEEKGRLAIKADILEQIRTTTLFKH VTSWLDSQRSRCRTIAKLQDRDMLPELAAGVCCQGACLLTGCCLPGGKCCSQIDVKHLNVDHKNIVTLVSGTVASGSSSE QGVDVLVPLCQMGPEGHCIGMHPSTADVLTVLLLALPLHTWSGIKEEKLCAEVTSLLTTENLPPLLQEEVLFLREQLHFL MTDIGAPPH
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR33447:SF10
1 486 486 3.6E-235 –
ProSiteProfiles
PS51443
1 221 221 49.25
IPR007719
PANTHER
PTHR33447
1 486 486 3.6E-235
IPR040409
Pfam
PF05023
7 216 210 3.5E-90
IPR007719
SUPERFAMILY
SSF54001
13 217 205 8.63E-79
IPR038765
Gene3D
G3DSA:3.90.70.30
16 222 207 1.2E-84
IPR038156
Pfam
PF09328
221 477 257 4.0E-105
IPR015407

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0010038
Biological process Response to metal ion Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a metal ion stimulus.
Subterm of
GO:0016756
Molecular function Glutathione gamma-glutamylcysteinyltransferase activity Catalysis of the reaction: glutathione + Glu(-Cys)(n)-Gly = Gly + Glu(-Cys)(n+1)-Gly.
Subterm of
GO:0046872
Molecular function Metal ion binding Interacting selectively and non-covalently with any metal ion.
Subterm of
GO:0046938
Biological process Phytochelatin biosynthetic process The chemical reactions and pathways resulting in the formation of phytochelatins, any of a group of peptides that bind metals (Cd, Zn, Cu, Pb, Hg) in thiolate coordination complexes. The structure is of the type (gamma-glutamyl-cysteinyl)n-glycine, where n is 2 to 11.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0706800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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