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IPR007719

Description

IPR007719 is a Phytochelatin synthase, N-terminal catalytic domain.

<p>Phytochelatins are well known as the heavy metal-detoxifying peptides in higher plants, eukaryotic algae, fungi, nematode and cyanobacteria. Phytochelatin synthase (PCS, also known as glutathione gamma-glutamylcysteinyltransferase; [ec:2.3.2.15]) is involved in the synthesis of phytochelatins (PC) and homophytochelatins (hPC). This enzyme is required for detoxification of heavy metals such as cadmium and arsenate. The N-terminal region of phytochelatin synthase contains the active site, as well as four highly conserved cysteine residues that appear to play an important role in heavy-metal-induced phytochelatin catalysis. The C-terminal region is rich in cysteines, and may act as a metal sensor, whereby the Cys residues bind cadmium ions to bring them into closer proximity and transferring them to the activation site in the N-terminal catalytic domain [[cite:PUB00044775]]. The C-terminal region displays homology to the functional domains of metallothionein and metallochaperone.</p> <p>This entry represents the N-terminal catalytic PCS domain, which belongs to the petidase family C83 of the papain superfamily of cysteine proteases, with a structurally conserved "catalytic triad" and oxyanion hole in the active site. It has an overall "crescent" shape with α/β fold containing eight α-helices and six β-strands [[cite:PUB00039759]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Biological process Response to metal ion Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a metal ion stimulus.
Molecular function Glutathione gamma-glutamylcysteinyltransferase activity Catalysis of the reaction: glutathione + Glu(-Cys)(n)-Gly = Gly + Glu(-Cys)(n+1)-Gly.
Molecular function Metal ion binding Interacting selectively and non-covalently with any metal ion.
Biological process Phytochelatin biosynthetic process The chemical reactions and pathways resulting in the formation of phytochelatins, any of a group of peptides that bind metals (Cd, Zn, Cu, Pb, Hg) in thiolate coordination complexes. The structure is of the type (gamma-glutamyl-cysteinyl)n-glycine, where n is 2 to 11.

Associated Lotus transcripts 13

Transcript Name Description Predicted domains Domain count
RecName: Full=Glutathione gamma-glutamylcysteinyltransferase 1; AltName: Full=LjPCS1-8R; AltName: Full=Phytochelatin synthase 1gi|33286859|gb|AAQ01752.1| phytochelatin synthase [Lotus japonicus] gi|122208907|sp|Q2TSC7.1|PCS1_LOTJA 13
RecName: Full=Glutathione gamma-glutamylcysteinyltransferase 2; AltName: Full=LjPCS2-7R; AltName: Full=Phytochelatin synthase 2] gi|147719992|sp|Q2TE74.2|PCS2_LOTJA 6
Phytochelatin synthase PCS2-7R [Lotus japonicus] gi|50659119|gb|AAT80341.1| 8
6
RecName: Full=Glutathione gamma-glutamylcysteinyltransferase 3; AltName: Full=LjPCS3-7N; AltName: Full=Phytochelatin synthase 3gi|67773366|gb|AAY81940.1| phytochelatin synthase [Lotus japonicus] gi|122202937|sp|Q2QKL5.1|PCS3_LOTJA 6
RecName: Full=Glutathione gamma-glutamylcysteinyltransferase 1; AltName: Full=LjPCS1-8R; AltName: Full=Phytochelatin synthase 1gi|33286859|gb|AAQ01752.1| phytochelatin synthase [Lotus japonicus] gi|122208907|sp|Q2TSC7.1|PCS1_LOTJA 8
Phytochelatin synthase; TAIR: AT5G44070.1 phytochelatin synthase 1 (PCS1); Swiss-Prot: sp|Q2QKL5|PCS3_LOTJA Glutathione gamma-glutamylcysteinyltransferase 3; TrEMBL-Plants: tr|I3S9J9|I3S9J9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0706800 12
Phytochelatin synthase; TAIR: AT5G44070.1 phytochelatin synthase 1 (PCS1); Swiss-Prot: sp|Q2QKL5|PCS3_LOTJA Glutathione gamma-glutamylcysteinyltransferase 3; TrEMBL-Plants: tr|I3S9J9|I3S9J9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0706800 12
Phytochelatin synthase; TAIR: AT5G44070.1 phytochelatin synthase 1 (PCS1); Swiss-Prot: sp|Q2QKL5|PCS3_LOTJA Glutathione gamma-glutamylcysteinyltransferase 3; TrEMBL-Plants: tr|I3S9J9|I3S9J9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0706800 12
Phytochelatin synthase; TAIR: AT5G44070.1 phytochelatin synthase 1 (PCS1); Swiss-Prot: sp|Q2TE74|PCS2_LOTJA Glutathione gamma-glutamylcysteinyltransferase 2; TrEMBL-Plants: tr|I3S9J9|I3S9J9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0706800 12
Phytochelatin synthase; TAIR: AT5G44070.1 phytochelatin synthase 1 (PCS1); Swiss-Prot: sp|Q2TSC7|PCS1_LOTJA Glutathione gamma-glutamylcysteinyltransferase 1; TrEMBL-Plants: tr|I3T4M3|I3T4M3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0706900 12
Phytochelatin synthase; TAIR: AT5G44070.1 phytochelatin synthase 1 (PCS1); Swiss-Prot: sp|Q2TSC7|PCS1_LOTJA Glutathione gamma-glutamylcysteinyltransferase 1; TrEMBL-Plants: tr|I3T4M3|I3T4M3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0706900 17
Phytochelatin synthase; TAIR: AT1G03980.3 phytochelatin synthase 2; Swiss-Prot: sp|Q2TSC7|PCS1_LOTJA Glutathione gamma-glutamylcysteinyltransferase 1; TrEMBL-Plants: tr|I3T4M3|I3T4M3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0173500 12

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
SSF54001 SUPERFAMILY 1 7.69