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LotjaGi1g1v0706900.1

Overview

Field Value
Gene ID LotjaGi1g1v0706900
Transcript ID LotjaGi1g1v0706900.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Phytochelatin synthase; TAIR: AT5G44070.1 phytochelatin synthase 1 (PCS1); Swiss-Prot: sp|Q2TSC7|PCS1_LOTJA Glutathione gamma-glutamylcysteinyltransferase 1; TrEMBL-Plants: tr|I3T4M3|I3T4M3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0706900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:127537792..127542096) extracted from Lotus japonicus Gifu genome v1.2.

AAAGAAAAGAAATCTGCGTCGTGGGTAAGAATCTGAAGTCATTCTTGGACTTAAAGCCCTGTTTGGTAGTCACCCCCTAA TCACTTTGAAAAAAATCACAAATTGTAGCTTCTGCGAATCCATTCCAATCCAAACAGGGCATAATAGGTTGGTTTTGAGT GCGATGGCGATGGCGATGGCGGGGTTGTATCGGCGCCTTCTTCCTTCACCCCCTGCCGTCGATTTCGCTTCCTCTCAGGG CAAGGTCAGTCCATAATAGCAGCCACCGTCTTTGCTTTACTTGCTTCGTTACAGCGAGCTTAATTATCAAATTATTAGTC AAATTAGTCCTCAAATTCACAATGTGCATGCAATGTAATCATGTATTAGTAAATACTAATTCTTATGCTTAAGGTCTTAA ATCTCTTGAGGACCAATTTAACTAGTATAATTCAAATTCAGTGGTTTTATTTATGCCTCGATTACATATGAGTTTAATGG ATATGCACGCGCACTGAGGAGAAATAATTACTTTCGTTTAAAATTTTAATTAAAATAAAAATATTTTTTCTAATTTGGCG GAACTCAATTGGATGACTGTCAACTTGACAGTCCATAAGCTACTGATATCTCGAGAATTGATTCGGGCTTTAGAATCAAA AGTTGCTGATATCTCGAGAATTGGTTCTGGCTTTAGAATCAAAAGGTTGAATGATTTCCAGGATATTTGTTGACTAAATT TGACTGGTTTGATTTCAGCAACTTTTTCTTGAAGCGGTTCAAAATGGAACCATGGAAAGCTTTTACAGGTTGGTTTCATA TTTCCAAACGCAATCAGAGCCTGCATTTTGTGGCCTCGCGAGCTTGTCCATGGTCCTCAATGCTCTTGCCATTGATCCTG GCAGAAAATGGAAAGGTATGCAGTATGCTGCCTTCATACATTTTACGATTGAAATGTTTACAAATCACTGCATTGCTCGC ATTTTGCTGTTTCCTTGTGAAGTACAGTTTTCTTATTGATATAGCTTAGTACAATATATGGTCTGCTGCAAAAATAGCTT AGTACATTGCAAATTTATAAGTACAGTTTAAATGGTTGAACCAAGTGCATGCAGATTTCTGCTTCTGTTGTGAAATTTAT TTGGGTTTGGGTGATTTATATACAGGACCTTGGAGATGGTTTGATGAATCTATGTTGGACTGTTGCGAACCTCTGGACAA GATCAAAGCTAGAGGCATCTCATTTGGAAAGCTTGTATGCTTGGCTCACTGTGCTGGAGCGAAAGTTGAAGCCTTTCATG CAAGCCATAGCAGTATCGATCATTTTCGTAAATATGTCATGAAATGTTCAACTTCTGATGATTGTCATGTTATCTCATCA TACCACAGAGAGGCTCTCAAACAAGTATGCCTTATGGTTTATGTAACTTTGACATAATAGGAATTGCAATAACTTTCTAG GACTATGAGCTTATTATCCTAGGTCGGAACTAGGTTGTAGGAGCTCTTTTTCTTCGCTCCCATGTATTACGTTTTACCAT CATGGCATGCATGCTAATTAGTTTATATAATTCCTCATTGTCGGATCCACTTTTTCCTATAAAATTTATTTTAATAGGCA GTATTGGTGCATGTATATTCATTCTGGCAAAAGTGGTTTGAATGTTTAGTTGAATTTATTTTTGTGACAGACAGGAACTG GTCACTTTTCTCCTATTGGTGGCTATCATGCTGGAAAGGACATGGCACTTATTTTGGATGTTGCACGTTTCAAGTATCCT CCCCATTGGATCCCACTTACACATCTTTGGGAAGGCATGAATTATGTTGATGAATCCACTGGAAAAACCAGAGGGTATAG TTTCTTGTTTATGCTAATTTCATTGACCTTATAGTATGATTAATCCAACTGTTAGAATGTTATTGAAGGTTGAGATAAAT TTCTTCAAATCTTGTTGCCCTAAGGTCAGCTTCTGACTAAAACAACAACAAAAGCCTTATCCCACTAACTACTAAGTAAG GTCGGTTATATGAATCATTAGACGCCACTGTGCTCGATAAAAAACCAAATTTTGTGGAACATTATTGACCCTAAGGTCAC CTCTAATAATATCTTCCAACGTCCTTTTTGACCTCCCTTTGCCCATCTTCACATGACTAAGAAGTAAGAACCATGTTACC AACCCTTCTCAACAGTGCCTCCAAAGGTCTTGGTACATGCCTGAACCACCTTAATCGATTTTCCATCATCTTCCCCTCAA TAGGTGTACATGTCTTAACCACCTTAATCGATTTTCCATTATCTTCCCCTCAATAGGTATCACACCAATATCTCCCCTTA TATGATCATTACATATCTTGTCCTTTCTAGTGTGACCACTCATCCATCCAGCTAATGAATAAAATAACTTATTTTTACAA AAGGAATAAAATAAATTTGATGGTTTCTCTTTTTTATGTGCAATTTGGCTTTATCCTCTTCAGGTTCATGCTTATATCAA GGCCTCACAGGGAACCTGGCATGCTTTATACTCTGGTATTTTTCATTCCTTTATGTGAGTCAGAATTTGACACTTAAGCA TACTGTAAATGACATTGATGTTTGTGTGGGTTGAATGTGTCACCTACTTCTGCTGATCTTGCAGAGCTGCAAACACGAGA GTTGGAATAGTATTGCCAAATTCCTAATTGATGATATCCCTTTTCTATTAACATCAGAGGATGTGAAAGACATTTGTAAG GTTCTTTCAGTTATCGTCACGTCGCTGCCATCTAATTTTGAAGAATTCATCAAATGGGTTGCAGAGATCAGGAGAGGAGA GGATGGTTCTCCAAGCTTAAGTGTAGAGGAGAAAGCACGACTTTCTGTCAAGGTCATAAATCTTTCCATCATTGTATAAA ATCTAAACCAGTTAGTTCATTTTACTAGTCTCATGTATAAACTGTTTTGTTATGCAGGAAGAGATATTGAAACAGGTGCA GAGGACAGGACTTTTCAAACATGTAGCCTCGTTTTTGTCACATTCTTGCAGCGGACACACACCAACTTCAGGCGATAGAG ACACCTTTCCTGTCATTGCGGCAAGTGTTTGTTGTCAAGGAGCGGAAATTTTAGGTGGGAAAATTAGCTCGTCAGCGGAG TATTGCTGTCGTGAAACATGCATGAAATGCTGGAAAGCGGAAGATGACAAGCCAATAAGAATGGTTTGTGGCACTGTGGT AAATGGCAATACTGAACAAGGGGTTGATGTGCTGATTCCTTCATCATGTGGGAAATTATCTTGCACTTGCTCTAGCACAA CCAAGTCCATAAGGAAGCACCCAGCAAGCACTGATGTGTTAACTGTGCTTCTATTGTCCTTACCAACTTCAACCTGGGCC GGTATCGCAGATGAGAAGCTTTTGAGCGAAATTCATGACCTTGTTTCAATTGAAAACCTTCCTGCTTTGCTTCAAGAAGA GGTAGTTATCTTTCATTTGTTGTTTTTAAAATAAAATAATTTTTATTTTCTGCCCCTTTGCCCTGGGATTTCTATAACCT TTTGATGCCTCTGAGCGGTGATAAAATCATATTGAAATCTTGTCCCAAATTGAAAACCTACTGGTTTCCGAACATGTACT TAGTCCATTTTTGGTTGCACTTCCTAAATTCACTTCATCCATAAATTACAATTTTTATTGCCATAGCTAATTTGGAATGT ATGTCCAACACATCCAAACTTGATGTTAGATTCGCGTGTGAGTGTTATAATGCGTTATAAACTGCTCCGCGAAAAATGCT TTGTTGGTCTTGGCATAGCAGCTCTTATGTTGCTAATTCTACTCCATTATAAAATTTTGCATTTCAGGTTTTGCACTTGA GACGTCAGCTACACATTCTCAAGAGATGTCAAGAGGGAAAGGTAGATGAGGATCTTGGTGTACCTTTGTCTTAGCAGCTC CTTCATTTTGATTCATCAGATAGGTTGAGTTTGAGAATCAGGGTCTAGCGCCAGAATGACAATCTAGCAAATTTGATGAC TTAGAAACTCGACAAGATAACCCATGATTTGCTAGATTGTGGTAGATTTTTTGCTCCTGGTGGAATGAGACAATGGCATG AACAGAGGCCATCTTTTGGCCTTAGGGAAAATTGTTATATTTCAACTTTAATTTATGTTCTCATTGTAATACACTAGGAT TATATACCCTTACTACTTAGGGAAGAAAATTTTGGTAGTTATTTATCAGTTGCAACACCAATTGTAAGAGCAGCAACATT GTACAACATTGTCTAATGGATGACCTTTTGCTTAGCTTTTGTTGCATTACCAATTTAATTCATGA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0706900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGATGGCGATGGCGGGGTTGTATCGGCGCCTTCTTCCTTCACCCCCTGCCGTCGATTTCGCTTCCTCTCAGGGCAA GCAACTTTTTCTTGAAGCGGTTCAAAATGGAACCATGGAAAGCTTTTACAGGTTGGTTTCATATTTCCAAACGCAATCAG AGCCTGCATTTTGTGGCCTCGCGAGCTTGTCCATGGTCCTCAATGCTCTTGCCATTGATCCTGGCAGAAAATGGAAAGGA CCTTGGAGATGGTTTGATGAATCTATGTTGGACTGTTGCGAACCTCTGGACAAGATCAAAGCTAGAGGCATCTCATTTGG AAAGCTTGTATGCTTGGCTCACTGTGCTGGAGCGAAAGTTGAAGCCTTTCATGCAAGCCATAGCAGTATCGATCATTTTC GTAAATATGTCATGAAATGTTCAACTTCTGATGATTGTCATGTTATCTCATCATACCACAGAGAGGCTCTCAAACAAACA GGAACTGGTCACTTTTCTCCTATTGGTGGCTATCATGCTGGAAAGGACATGGCACTTATTTTGGATGTTGCACGTTTCAA GTATCCTCCCCATTGGATCCCACTTACACATCTTTGGGAAGGCATGAATTATGTTGATGAATCCACTGGAAAAACCAGAG GGTTCATGCTTATATCAAGGCCTCACAGGGAACCTGGCATGCTTTATACTCTGAGCTGCAAACACGAGAGTTGGAATAGT ATTGCCAAATTCCTAATTGATGATATCCCTTTTCTATTAACATCAGAGGATGTGAAAGACATTTGTAAGGTTCTTTCAGT TATCGTCACGTCGCTGCCATCTAATTTTGAAGAATTCATCAAATGGGTTGCAGAGATCAGGAGAGGAGAGGATGGTTCTC CAAGCTTAAGTGTAGAGGAGAAAGCACGACTTTCTGTCAAGGAAGAGATATTGAAACAGGTGCAGAGGACAGGACTTTTC AAACATGTAGCCTCGTTTTTGTCACATTCTTGCAGCGGACACACACCAACTTCAGGCGATAGAGACACCTTTCCTGTCAT TGCGGCAAGTGTTTGTTGTCAAGGAGCGGAAATTTTAGGTGGGAAAATTAGCTCGTCAGCGGAGTATTGCTGTCGTGAAA CATGCATGAAATGCTGGAAAGCGGAAGATGACAAGCCAATAAGAATGGTTTGTGGCACTGTGGTAAATGGCAATACTGAA CAAGGGGTTGATGTGCTGATTCCTTCATCATGTGGGAAATTATCTTGCACTTGCTCTAGCACAACCAAGTCCATAAGGAA GCACCCAGCAAGCACTGATGTGTTAACTGTGCTTCTATTGTCCTTACCAACTTCAACCTGGGCCGGTATCGCAGATGAGA AGCTTTTGAGCGAAATTCATGACCTTGTTTCAATTGAAAACCTTCCTGCTTTGCTTCAAGAAGAGGTTTTGCACTTGAGA CGTCAGCTACACATTCTCAAGAGATGTCAAGAGGGAAAGGTAGATGAGGATCTTGGTGTACCTTTGTCTTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0706900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAMAMAGLYRRLLPSPPAVDFASSQGKQLFLEAVQNGTMESFYRLVSYFQTQSEPAFCGLASLSMVLNALAIDPGRKWKG PWRWFDESMLDCCEPLDKIKARGISFGKLVCLAHCAGAKVEAFHASHSSIDHFRKYVMKCSTSDDCHVISSYHREALKQT GTGHFSPIGGYHAGKDMALILDVARFKYPPHWIPLTHLWEGMNYVDESTGKTRGFMLISRPHREPGMLYTLSCKHESWNS IAKFLIDDIPFLLTSEDVKDICKVLSVIVTSLPSNFEEFIKWVAEIRRGEDGSPSLSVEEKARLSVKEEILKQVQRTGLF KHVASFLSHSCSGHTPTSGDRDTFPVIAASVCCQGAEILGGKISSSAEYCCRETCMKCWKAEDDKPIRMVCGTVVNGNTE QGVDVLIPSSCGKLSCTCSSTTKSIRKHPASTDVLTVLLLSLPTSTWAGIADEKLLSEIHDLVSIENLPALLQEEVLHLR RQLHILKRCQEGKVDEDLGVPLS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR33447:SF2
3 496 494 4.3E-222 –
ProSiteProfiles
PS51443
3 223 221 49.841
IPR007719
PANTHER
PTHR33447
3 496 494 4.3E-222
IPR040409
Pfam
PF05023
9 218 210 1.2E-87
IPR007719
SUPERFAMILY
SSF54001
15 219 205 2.35E-76
IPR038765
Gene3D
G3DSA:3.90.70.30
18 224 207 2.3E-81
IPR038156
Pfam
PF09328
223 483 261 3.1E-115
IPR015407

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0010038
Biological process Response to metal ion Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a metal ion stimulus.
Subterm of
GO:0016756
Molecular function Glutathione gamma-glutamylcysteinyltransferase activity Catalysis of the reaction: glutathione + Glu(-Cys)(n)-Gly = Gly + Glu(-Cys)(n+1)-Gly.
Subterm of
GO:0046872
Molecular function Metal ion binding Interacting selectively and non-covalently with any metal ion.
Subterm of
GO:0046938
Biological process Phytochelatin biosynthetic process The chemical reactions and pathways resulting in the formation of phytochelatins, any of a group of peptides that bind metals (Cd, Zn, Cu, Pb, Hg) in thiolate coordination complexes. The structure is of the type (gamma-glutamyl-cysteinyl)n-glycine, where n is 2 to 11.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0706900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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