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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0709300 |
| Transcript ID | LotjaGi1g1v0709300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 11S globulin seed storage protein; TAIR: AT1G03890.1 RmlC-like cupins superfamily protein; Swiss-Prot: sp|P02858|GLYG4_SOYBN Glycinin G4; TrEMBL-Plants: tr|A0A072U489|A0A072U489_MEDTR Glycinin G4; Found in the gene: LotjaGi1g1v0709300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:127738791..127741492) extracted from Lotus japonicus Gifu genome v1.2.
CAGATACATCACTAGCTATATATATTTACATTTACATGTGAAACAAGAACGATGTACACAATATAATACACATGGCCAAA TCACCAAATGCATAGGACTGGAATCGAAAGCGACACTAATTAACACTTTGTTTAGTAAAGAATAGAGGAATTAGAGAAGA GACCAAATGAGTAGAGAGAACAAGATTAGAGCATCACAAAACATATAGCAGCTGACACATGAATATTTAATATCACTCGG TGCGTTTTTTTCTGATTTGTTTTATATCGATCGATCGGTGAATTTTGTTTCCCTAACAAAACAAATTGATAAGACGAATT GAAGGAAGGAAGCGTAGGGTGCCACTACTGTAAACTCTAAATATTGCTGCTTATTAGGCATGATGATCAGAAGCGGAGAA TCAGAAGTGATAGAGGGTCCCATAGCACCGCAAGCAAGGGCAATAAACTTCGATGAGGTGTAAGAAATCAGAGTTGGATA TGCATGCATGGTGAAAAATGTCTCCATCTCAGCAACTCACATTCGTAACGTGTCACTCCTTCAAGCTTCTCTCTAGTCTA TAAAATAAACCACCACTTAGTAGCATCGATCCCTCATCAGTTAAGTGTGTCTATCAGTATCATGATCCATTGTCTATTAT GATACTAATGGCCAAGCCTCATTCTGTTTGCTTTCTTTTCTTTCTGCTTTTCTTCACCTGTTGCTTAGCACGCCACGTGC CAACTCAGTCTCAGCAGCAGAGCCAGAGCCAGAGCCAGTTCAAAGAATGCCAGCTCGATAGCATCGATGCGTTGGAACCT GATAACAGCATAGAATCAGAAGCAGGTCTCACTGAGACATGGAACGCTGCCAACCACCCTGAGCTCCGCTGCGCCGGTGT CGCTATCCTCCGCCGCACCATCAACCCTAGTGGCCTCCACTTACCATCCTACACTACCTATCCCGAACTACATTTCGTTG ACCAAGGTCAGTCAAACTTCTCCCACACTCCATCCCCATTTTTAAATTAACAATTAATCTCTCTAAATGCAATTAATTAA TCCAATATTTAATATATTTCAGGAAAGGGAGTGATTGGAATGGTGATCCCGGGTTGTGCGGAGACGTATGAAGAGCCACA AGTGCAGCGGCCGCAGCAGCAGCACGAACGCGACCGCCACCAGAAAGTTCGTTACCTCCGCCATGGTGACGTTATCGCCG TTCCTCCTGGCGTTCCTTACTGGACCTACAACTACGGCAAAAACCCTCTCGTCATCATCACTCTCCAAGATACCACCAAC AACCTCAACCAACTAGATCCAACTCCTACAGTAATTAATCAAAATTAACTAATTCATTACACACATAATTTTTGTTGATA ATCATAATTAATTAACTTGTCAATTTTGCAGAGATTCTACATTGCTGGAAAACCAGAAAAAGAACACTCTGAGTCAGAAT CAGAATCAGAATCAGAGAGTGGGAAACGCAAGGAGAAGAAGAAGGAAGGAGGAGTTAACAACATGTTCGGTGGATTCGAT TCAGCGTTCTTATCACGAGTGTTGAAAGTGAAGGAAGATCTCATCAGTAAGCTCCAGTCTCCGAAAGATGATCGCAAGAA ACAAATCATACATGTCAAAGGTGGACTCAGCATCATCAGACCACCATTAGAGCAAGAAATCAGAGAAACAGAACAAAGAG AAGAAGAAGAAGATGAACCTAGAGAAGGTGAACACCGTGAATGGCGTAGAGAAAGAACACGCAGAAAAGAACGTGAAGGA GAAGAAGGAGAAGAGGAAGTGGTAGAAGAGAAAGAAACCGAAACCAAAACCAAAACGAAAACGCGGGAGAAACATGAAAG AAGAGGTGAAGGTGAAGAAGGAGAAGAGGAAGAGGAACGAACCAGGACTAGAACACGAGAAAGGCGTGAGCGGCGTGAAG GGCAAAAGGGTCAAAGCAATGCTCTAGAGGAAACGGTTTGCACGATGAAGCTACACGAGAATCTCGCGGATCCTTCACGC GCGGATATATTCAACCCACGCGCAGGGCGCGTGAGCACGGTCAACAGTTTGACCTTACCCGTTCTGAAGAAGCTGAACCT AGGTGCGGAGTGGGTGAACCTGTATAAGAACGGTGTGTACGTGCCACACTGGAACATAAACGCGAACAGTGTGATGTACG TGACGAGGGGGAAGGGGAGGGTGCAGGTGGTGAATTGCGAGGGGGAGTCGGTGTTTGACGGGGAGGTGAAGAGGGGACAG GTGGTGGTTGTGCCGCAGGGGTTTGGGGTGGCGAAGCAGGCGGGGAGTGAGGGGTTGGAGTATATAGCTTTTAAGACGAA TGATATGGCGATGATTAGTCCGTTGGTGGGGATGAACTCGGCGATTAGTGGGACTCCGGCGGAGGTGCTTGGCCATGCTT TTGGGCTGAGTCCGGAGGAGGTGAGGGAACTGAAGAATAATAGGAAGGAGAGTATTTTGGCTAGTCCTCATGACTCTCGT GAGGATGCCTACATTTCCATGGTGTAACTGTAACATACTGTGTTATATAATAAGAATAATAAAATAATATGGTGTACCCC ATCTGGATGCAGACTTTATGGTGGTTGTATAATAGTCGTCATTAATAAAATTGCAATCCCATTCTTGAGAATAAAGTGTT AACTATTTTCATAGTTTTCTACTATGAGATTTGTCTAAATAAACCTAAAGTTTCACTTAAAT
CDS sequence (LotjaGi1g1v0709300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATACTAATGGCCAAGCCTCATTCTGTTTGCTTTCTTTTCTTTCTGCTTTTCTTCACCTGTTGCTTAGCACGCCACGT GCCAACTCAGTCTCAGCAGCAGAGCCAGAGCCAGAGCCAGTTCAAAGAATGCCAGCTCGATAGCATCGATGCGTTGGAAC CTGATAACAGCATAGAATCAGAAGCAGGTCTCACTGAGACATGGAACGCTGCCAACCACCCTGAGCTCCGCTGCGCCGGT GTCGCTATCCTCCGCCGCACCATCAACCCTAGTGGCCTCCACTTACCATCCTACACTACCTATCCCGAACTACATTTCGT TGACCAAGGAAAGGGAGTGATTGGAATGGTGATCCCGGGTTGTGCGGAGACGTATGAAGAGCCACAAGTGCAGCGGCCGC AGCAGCAGCACGAACGCGACCGCCACCAGAAAGTTCGTTACCTCCGCCATGGTGACGTTATCGCCGTTCCTCCTGGCGTT CCTTACTGGACCTACAACTACGGCAAAAACCCTCTCGTCATCATCACTCTCCAAGATACCACCAACAACCTCAACCAACT AGATCCAACTCCTACAAGATTCTACATTGCTGGAAAACCAGAAAAAGAACACTCTGAGTCAGAATCAGAATCAGAATCAG AGAGTGGGAAACGCAAGGAGAAGAAGAAGGAAGGAGGAGTTAACAACATGTTCGGTGGATTCGATTCAGCGTTCTTATCA CGAGTGTTGAAAGTGAAGGAAGATCTCATCAGTAAGCTCCAGTCTCCGAAAGATGATCGCAAGAAACAAATCATACATGT CAAAGGTGGACTCAGCATCATCAGACCACCATTAGAGCAAGAAATCAGAGAAACAGAACAAAGAGAAGAAGAAGAAGATG AACCTAGAGAAGGTGAACACCGTGAATGGCGTAGAGAAAGAACACGCAGAAAAGAACGTGAAGGAGAAGAAGGAGAAGAG GAAGTGGTAGAAGAGAAAGAAACCGAAACCAAAACCAAAACGAAAACGCGGGAGAAACATGAAAGAAGAGGTGAAGGTGA AGAAGGAGAAGAGGAAGAGGAACGAACCAGGACTAGAACACGAGAAAGGCGTGAGCGGCGTGAAGGGCAAAAGGGTCAAA GCAATGCTCTAGAGGAAACGGTTTGCACGATGAAGCTACACGAGAATCTCGCGGATCCTTCACGCGCGGATATATTCAAC CCACGCGCAGGGCGCGTGAGCACGGTCAACAGTTTGACCTTACCCGTTCTGAAGAAGCTGAACCTAGGTGCGGAGTGGGT GAACCTGTATAAGAACGGTGTGTACGTGCCACACTGGAACATAAACGCGAACAGTGTGATGTACGTGACGAGGGGGAAGG GGAGGGTGCAGGTGGTGAATTGCGAGGGGGAGTCGGTGTTTGACGGGGAGGTGAAGAGGGGACAGGTGGTGGTTGTGCCG CAGGGGTTTGGGGTGGCGAAGCAGGCGGGGAGTGAGGGGTTGGAGTATATAGCTTTTAAGACGAATGATATGGCGATGAT TAGTCCGTTGGTGGGGATGAACTCGGCGATTAGTGGGACTCCGGCGGAGGTGCTTGGCCATGCTTTTGGGCTGAGTCCGG AGGAGGTGAGGGAACTGAAGAATAATAGGAAGGAGAGTATTTTGGCTAGTCCTCATGACTCTCGTGAGGATGCCTACATT TCCATGGTGTAA
Protein sequence (LotjaGi1g1v0709300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MILMAKPHSVCFLFFLLFFTCCLARHVPTQSQQQSQSQSQFKECQLDSIDALEPDNSIESEAGLTETWNAANHPELRCAG VAILRRTINPSGLHLPSYTTYPELHFVDQGKGVIGMVIPGCAETYEEPQVQRPQQQHERDRHQKVRYLRHGDVIAVPPGV PYWTYNYGKNPLVIITLQDTTNNLNQLDPTPTRFYIAGKPEKEHSESESESESESGKRKEKKKEGGVNNMFGGFDSAFLS RVLKVKEDLISKLQSPKDDRKKQIIHVKGGLSIIRPPLEQEIRETEQREEEEDEPREGEHREWRRERTRRKEREGEEGEE EVVEEKETETKTKTKTREKHERRGEGEEGEEEEERTRTRTRERRERREGQKGQSNALEETVCTMKLHENLADPSRADIFN PRAGRVSTVNSLTLPVLKKLNLGAEWVNLYKNGVYVPHWNINANSVMYVTRGKGRVQVVNCEGESVFDGEVKRGQVVVVP QGFGVAKQAGSEGLEYIAFKTNDMAMISPLVGMNSAISGTPAEVLGHAFGLSPEEVRELKNNRKESILASPHDSREDAYI SMV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 24 | 24 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 31 | 31 | - | – | |
| Phobius | 1 | 8 | 8 | - | – | |
| SUPERFAMILY | 9 | 546 | 538 | 3.87E-87 | ||
| Phobius | 9 | 19 | 11 | - | – | |
| PANTHER | 9 | 556 | 548 | 1.6E-206 | – | |
| PANTHER | 9 | 556 | 548 | 1.6E-206 | – | |
| Phobius | 20 | 24 | 5 | - | – | |
| Phobius | 25 | 563 | 539 | - | – | |
| Gene3D | 35 | 293 | 259 | 3.9E-93 | ||
| SMART | 49 | 251 | 203 | 7.9E-29 | ||
| Pfam | 51 | 201 | 151 | 5.3E-33 | ||
| MobiDBLite | 200 | 231 | 32 | - | – | |
| MobiDBLite | 200 | 226 | 27 | - | – | |
| MobiDBLite | 276 | 374 | 99 | - | – | |
| MobiDBLite | 294 | 317 | 24 | - | – | |
| MobiDBLite | 325 | 373 | 49 | - | – | |
| PRINTS | 387 | 404 | 18 | 1.8E-44 | ||
| SMART | 388 | 537 | 150 | 2.8E-57 | ||
| Pfam | 389 | 536 | 148 | 5.5E-37 | ||
| Gene3D | 391 | 557 | 167 | 1.3E-51 | ||
| PRINTS | 410 | 430 | 21 | 1.8E-44 | ||
| PRINTS | 456 | 472 | 17 | 1.8E-44 | ||
| PRINTS | 474 | 489 | 16 | 1.8E-44 | ||
| PRINTS | 492 | 510 | 19 | 1.8E-44 | ||
| PRINTS | 514 | 531 | 18 | 1.8E-44 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nutrient reservoir activity | Functions in the storage of nutritious substrates. |
Expression pattern of LotjaGi1g1v0709300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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