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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0711200 |
| Transcript ID | LotjaGi1g1v0711200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT2G01390.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9ZU29|PP139_ARATH Pentatricopeptide repeat-containing protein At2g01390; TrEMBL-Plants: tr|V7CT34|V7CT34_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0711200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:127953205..127957327) extracted from Lotus japonicus Gifu genome v1.2.
AGTCCATATTTTCTAAAATAACACCATATTAGTCTTTCATGTTGTTTCTCCACTATTACAGTTCAGGAATCTTAATTTTG TCGAAACCTCTTTTGTTGAATTAGGTTTTCTCTGTTACCGATGTGGAGAACTAGATTTTCCAAGCTTCATGGATTTCTCA GAAACCTCGTTCCTGCTCCTTCCGTCAAACGAATGCATTCCCTTCAACAACATCAACACAAACAACACAAAAACAAAGCC ATCACTCCAATTCATAGCAGCAACAACAACAACAACAACAACAACAATGTTGTCAAATCAAAGAAGAAGAAGAAGAAAAA CAATGGTTCTTCTTCTGATCCTAAAGAGTACATGAGGAACATAATTGGCAAAATTTACAGAATTTTGAAGTTTTCAACAT GGGATTCAGCTCAGCAAGAGCTTGATAGTCTCCCTTTGAAATGGGACTCTTACACTGTCAACCAGGTTCTCAAATCACAC CCTCCAATGGAGAAAGCATGGTTGTTCTTCAACTGGGCTTCTCGCCTCAAAGGCTTCAAGCATGACCAGTTCACTTACAC GACAATGCTGGATATTTTTGGAGAAGCTGGTCGGATTTCCTCCATGAAACATTGTTTCCAGCAGATGCAGGAGAAGGGGG TCAAGGTTGATTCTGTTGTATATACTTCCATGATGCATTGGCTGTCGAGTTATGGGAATGTGGATGAGGCTGTTGCGCTT TGGGAAGAAATGAAATCCAAGGGATGTTGCCCTACTGTTGTTTCTTACACTGCTTATATCAAGATTCTGTTTGATGATCA AAGAGTCATGGAGGCCACTGGTGTTTACAAGGAGATGCTTCGCGCGGGATGTGTTCCGAATTGCCATACTTACACGGTTC TTATGGACTATCTAATTGGGTCTGGTTAGTGTGCTTCCAACCTGTTTGTTATATTGTCTAGGAGGGTATTAAGTCCTTCT CTTTGCTAGTTAAAAGATTATGCATGTATATGTATGTGCCACACATGTATGTATGATATTGCTAACGTATTCACATTGTC CTTTTTTTGTACCTAGATCTTAGGTGTACATTAACAAATTTGAAGTTGTAACTTGTTAACATACTCTTTCTAAAAATTAA GCTGGTGGTTCTTAGAAATGACATACAAGTAATATTTGTTGTTGTTTCTTTTTTAGATTTTAGTGATGATACTGTTTTAT AACTAAATGAACTCAAAACTCCAGCTGAACTTGCAATGATTCCTTGCTTTAGAGTTTGTTGACTGAAGGATTATTTTCCT TTCAGAAAAAGCTAAGTATCTTATTGACATTTACATTCATTAATCCCTTAGGGCTTATTGAGAATCATATAATGTTAGTC TTAAAAAAGTATTAAAATGGTGTACTTTGCTTGCATCATTTATAACATGAAAAATATGTTGCTTGTGTTTATAATGTTCA GCAGATAAAATGGTAGCTTCTATGCAGTATACTTTTGGTTCTATTTCATTTAGAAACTTCTAAGTTCCAACTGCTACACT TGTCTCCTATCCTGAGTTGGTGAGTTGTGTAGTTTTACTTTCTTATAAAATTTGTAGGCAGTAAGGGTTATTCTTGTTTT TGTGTATTTTAGGAAAATGCAAAGAAGCCCTTGAAATTTTTGAAAAGATGCAAGAGGCTGCGGTGCAACCTGATAAAGCT GCATGCAATATTTTGATTGAGAAGTGTTCTAAAGTTGGTGGGACTTTGTTCATGACCCACATCCTTGAGTATATGAAAGA AAACCGTCTTGTTCTTCGTTATCCTGTTTTCATGAAAGCATTGGAAGCTTTAAGAGTTGCTGGTGAGAGTGATACCCTTC TAAGGCAAGTCCATCCACACCTTGATATGAATTGTAGCATACGAAAGAAAGCAAATGACAGCATCCAAGTTGCTGCAGAT TCTCCTGCTAATTTAGATAAAAAACTTATATCTGTTCTCTTGAAAAATAGAAATGTTGTTGCTATTGACCATTTACTCAA GGGGATGATGGATAAGAAAATACCTTTGGATAATAAGGTTGTCTCAGCCATTTTAGAGGTAAATAGTAGTCATTGTCGAC CTGATGGTGCTTTGTTGGCATTCAAGTACTGTGTAGCAATGGGAATAAGTATTGAGAGAACAGGATATCTTTCCTTAATA GGCTTGTTGATCAGATCAAATATGTATCCTAAGCTGGTGGAAATTGTTAGGGAAATGACTAGAGCTGGGCATTCTCTTGG AGTGTATCTGGCTTCACTTATAATTTATAGGCTTGGTTGCGCTAGGCAGCCAGCATTGGCCTTGAAGATTTTCATCTTAT TACCCGATAATCATAAGTGCACTGCTACCTATACTGCTTTGATTAGCGCTTACTTTTCTGCTAGAAGTGTTAATAAGGCA CTTGAGTTTTACAAAATCATGTGCAGAAAAGGATTTCGTCCGATGTTAGGCACGTACAATGTACTAATAGCCGGTTTGGA AAGAAATGGTAGATGTCCTGAAGCAGAACTTTATAAGAAACAAAAGAAGAACCTGCATACTAATTGTTGTTCTCAGGAAA GTATTGGCATCGAGGGAAAGATATGCGACCTTCTCTTTGCTGTGAATGTCATACTTTGATATTGATGTGTTGAGATTCTC ATTGTTGATTCATATTGAGGGCATGATGAGTAGATGCCTATTGGAAACTGGAAATGTACCTTATGCTGCAAGCATGGCAC CTGCTGCTTATGTGTCAAGAAAAGATGGAAATTTTGACCCTAGATGCGGTTCATTAGAGATTCCAACAAGGTTTAACTGT CAATTTTATCTATCTGCATTTGCTTACGTGTTGAATTTCCATGTATCCCATGTGAATGACGTGTATGCACAGCACAGCAG ACCCATTTGAGGAACATAATTACGAGTTCCATGTCCAAAGGAGTTTCAAACCTTCCATCTCTCCCAACACTATCACTTGA AACATTTGAAGCCATTAAGCCCAAAATACAGCAACCTTTTCTTCATTACAGTTTCACTTTTTGTTCATTTCTATTATCAA ACCATCGCATCCCGTCTTCTCCAGATTCTTGCGATGAAGAACAGGGTCTTCTTTGTCACGCCTTCTTCTTCATGCAGTTG GGTGGAAATATTTGTCAGCTTGGAAGCACAAGTTCACAATAAGTGGTTAGTTATGCTATATAATTGAGCTTATTATTGAA AAGTGTAGTGATTCCTTCTACTATGGCTGCGTGCTTTACACTAGGGACTCCCTCTTTCCACCGTTGGTTTGTTCTGGGTT TGATGATTTGAATCAATATATTGTTATGATTTTAGATTGATTTCAATTCTGATTTTTTTCTTTAATTTCTTTTTTGAGTT CTGCTCTGCATAGGAGGAAAAGAAACATAGGGAGAAAAACCAGAGGAACCCAAGAATGAAGAAGTGAAGAAACAGGAAGC TAAGAAAGTGGAAGAACCTGCAGCAGAGAACAAAGAGGAGGAATCAAACAATGAATCCATCAAGGATCAAGTTGCGCCCT CAGAAACTGTGCTTGAAATGTTCATGCATTGTGAGGATCGTGGGTGCAAGGTTCGTCGCTCCTTCGATGGAATGCTTACA ATGTCATCACCAAGAACTGCAATTTCTCCTTTACTCTAGCTGGGTCCGAATTTTTTGTGAGTCAGTTTTATGTTTCCATT GAACTGAGGTTTTTTTTGTGTGTGTGTATTCTTTGCAGTGTTTGATGATTGAAGCAGCTTACTAAGGTGTCTGAACGGGA AGGAAATTCAGGGTATTCCATGGGAGCATTTTTTTATAAGCCTCCCATGGGAGCTTGAACATAACAGACTGTGATGGAAG AATGTGCATATGAAGAGGATATTGTTGTGTTTATTTATAAGTTACTTGCAATATTAGTATACAAAACTTTTTGATTGTAC TTGTGTCAGTCAAATTATATTATTTGATTTATTATAATATTATTTGTTAACTATAATAGAGCACCTATAATAGAGCAAGC TAGTTAATGAAAGAATTCTCTATTCTCTATCACGGTTCATTGGAGGGTGGATGATTTTGTCGTCTCGTTCTCATTACAAT GAAAATGGAAGTTTAACCTTCTCCTTCTTCAATCCAATCACTA
CDS sequence (LotjaGi1g1v0711200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGAGAACTAGATTTTCCAAGCTTCATGGATTTCTCAGAAACCTCGTTCCTGCTCCTTCCGTCAAACGAATGCATTC CCTTCAACAACATCAACACAAACAACACAAAAACAAAGCCATCACTCCAATTCATAGCAGCAACAACAACAACAACAACA ACAACAATGTTGTCAAATCAAAGAAGAAGAAGAAGAAAAACAATGGTTCTTCTTCTGATCCTAAAGAGTACATGAGGAAC ATAATTGGCAAAATTTACAGAATTTTGAAGTTTTCAACATGGGATTCAGCTCAGCAAGAGCTTGATAGTCTCCCTTTGAA ATGGGACTCTTACACTGTCAACCAGGTTCTCAAATCACACCCTCCAATGGAGAAAGCATGGTTGTTCTTCAACTGGGCTT CTCGCCTCAAAGGCTTCAAGCATGACCAGTTCACTTACACGACAATGCTGGATATTTTTGGAGAAGCTGGTCGGATTTCC TCCATGAAACATTGTTTCCAGCAGATGCAGGAGAAGGGGGTCAAGGTTGATTCTGTTGTATATACTTCCATGATGCATTG GCTGTCGAGTTATGGGAATGTGGATGAGGCTGTTGCGCTTTGGGAAGAAATGAAATCCAAGGGATGTTGCCCTACTGTTG TTTCTTACACTGCTTATATCAAGATTCTGTTTGATGATCAAAGAGTCATGGAGGCCACTGGTGTTTACAAGGAGATGCTT CGCGCGGGATGTGTTCCGAATTGCCATACTTACACGGTTCTTATGGACTATCTAATTGGGTCTGGAAAATGCAAAGAAGC CCTTGAAATTTTTGAAAAGATGCAAGAGGCTGCGGTGCAACCTGATAAAGCTGCATGCAATATTTTGATTGAGAAGTGTT CTAAAGTTGGTGGGACTTTGTTCATGACCCACATCCTTGAGTATATGAAAGAAAACCGTCTTGTTCTTCGTTATCCTGTT TTCATGAAAGCATTGGAAGCTTTAAGAGTTGCTGGTGAGAGTGATACCCTTCTAAGGCAAGTCCATCCACACCTTGATAT GAATTGTAGCATACGAAAGAAAGCAAATGACAGCATCCAAGTTGCTGCAGATTCTCCTGCTAATTTAGATAAAAAACTTA TATCTGTTCTCTTGAAAAATAGAAATGTTGTTGCTATTGACCATTTACTCAAGGGGATGATGGATAAGAAAATACCTTTG GATAATAAGGTTGTCTCAGCCATTTTAGAGGTAAATAGTAGTCATTGTCGACCTGATGGTGCTTTGTTGGCATTCAAGTA CTGTGTAGCAATGGGAATAAGTATTGAGAGAACAGGATATCTTTCCTTAATAGGCTTGTTGATCAGATCAAATATGTATC CTAAGCTGGTGGAAATTGTTAGGGAAATGACTAGAGCTGGGCATTCTCTTGGAGTGTATCTGGCTTCACTTATAATTTAT AGGCTTGGTTGCGCTAGGCAGCCAGCATTGGCCTTGAAGATTTTCATCTTATTACCCGATAATCATAAGTGCACTGCTAC CTATACTGCTTTGATTAGCGCTTACTTTTCTGCTAGAAGTGTTAATAAGGCACTTGAGTTTTACAAAATCATGTGCAGAA AAGGATTTCGTCCGATGTTAGGCACGTACAATGTACTAATAGCCGGTTTGGAAAGAAATGGTAGATGTCCTGAAGCAGAA CTTTATAAGAAACAAAAGAAGAACCTGCATACTAATTGTTGTTCTCAGGAAAGTATTGGCATCGAGGGAAAGATATGCGA CCTTCTCTTTGCTGTGAATGTCATACTTTGA
Protein sequence (LotjaGi1g1v0711200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWRTRFSKLHGFLRNLVPAPSVKRMHSLQQHQHKQHKNKAITPIHSSNNNNNNNNNVVKSKKKKKKNNGSSSDPKEYMRN IIGKIYRILKFSTWDSAQQELDSLPLKWDSYTVNQVLKSHPPMEKAWLFFNWASRLKGFKHDQFTYTTMLDIFGEAGRIS SMKHCFQQMQEKGVKVDSVVYTSMMHWLSSYGNVDEAVALWEEMKSKGCCPTVVSYTAYIKILFDDQRVMEATGVYKEML RAGCVPNCHTYTVLMDYLIGSGKCKEALEIFEKMQEAAVQPDKAACNILIEKCSKVGGTLFMTHILEYMKENRLVLRYPV FMKALEALRVAGESDTLLRQVHPHLDMNCSIRKKANDSIQVAADSPANLDKKLISVLLKNRNVVAIDHLLKGMMDKKIPL DNKVVSAILEVNSSHCRPDGALLAFKYCVAMGISIERTGYLSLIGLLIRSNMYPKLVEIVREMTRAGHSLGVYLASLIIY RLGCARQPALALKIFILLPDNHKCTATYTALISAYFSARSVNKALEFYKIMCRKGFRPMLGTYNVLIAGLERNGRCPEAE LYKKQKKNLHTNCCSQESIGIEGKICDLLFAVNVIL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 23 | 75 | 53 | - | – | |
| MobiDBLite | 41 | 57 | 17 | - | – | |
| Gene3D | 88 | 228 | 141 | 1.2E-29 | ||
| PANTHER | 113 | 335 | 223 | 6.4E-53 | – | |
| ProSiteProfiles | 142 | 176 | 35 | 10.775 | ||
| TIGRFAM | 144 | 177 | 34 | 1.5E-7 | ||
| Pfam | 144 | 174 | 31 | 1.9E-4 | ||
| ProSiteProfiles | 177 | 211 | 35 | 12.682 | ||
| TIGRFAM | 179 | 213 | 35 | 3.4E-10 | ||
| Pfam | 179 | 209 | 31 | 2.3E-7 | ||
| Pfam | 211 | 256 | 46 | 1.4E-11 | ||
| ProSiteProfiles | 212 | 246 | 35 | 9.613 | ||
| TIGRFAM | 214 | 248 | 35 | 2.4E-5 | ||
| Gene3D | 229 | 366 | 138 | 1.9E-18 | ||
| ProSiteProfiles | 247 | 281 | 35 | 10.961 | ||
| TIGRFAM | 249 | 282 | 34 | 4.2E-5 | ||
| Pfam | 270 | 314 | 45 | 0.0012 | ||
| ProSiteProfiles | 282 | 316 | 35 | 6.774 | ||
| Gene3D | 367 | 502 | 136 | 1.3E-7 | ||
| PANTHER | 373 | 560 | 188 | 6.4E-53 | – | |
| ProSiteProfiles | 436 | 470 | 35 | 6.862 | ||
| Gene3D | 503 | 569 | 67 | 4.4E-12 | ||
| ProSiteProfiles | 504 | 538 | 35 | 10.961 | ||
| Pfam | 504 | 550 | 47 | 3.3E-9 | ||
| TIGRFAM | 507 | 538 | 32 | 3.1E-7 | ||
| ProSiteProfiles | 539 | 569 | 31 | 5.448 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0711200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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