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LotjaGi1g1v0714100.1

Overview

Field Value
Gene ID LotjaGi1g1v0714100
Transcript ID LotjaGi1g1v0714100.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description TRYPTOPHAN SYNTHASE ALPHA CHAIN family protein; TAIR: AT4G02610.1 Aldolase-type TIM barrel family protein; Swiss-Prot: sp|O22765|TRPA1_ARATH Tryptophan synthase alpha chain; TrEMBL-Plants: tr|I3S0A7|I3S0A7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0714100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:128230882..128235558) extracted from Lotus japonicus Gifu genome v1.2.

CAAGAAACGCCCACAGAGAGAGAGGTGAATTCAACGGATTGGAGCAGATAGAGACAGAAAGAGGAAAAACACACTACAGA GGAGAAGTAAGCAAGTGCTCTCTCTTTCGAATCTCTCTTCTCCATTTTTGCAGAGGAAACCGCTTTCACTCTCCCACAAA GACACACTTTTGGTATGTTATCTCATTCATTCTGCATTCACTGGTGCATATTTACAAACACCTTATGTGCTTAACTATGA AAATGCAACTGGGGTATTTATCTGATTCATTGCTTTACCCATTATTGAATGGATAATCTATTTCGTAAAAACATTCGTTT TTGTTCAATGGGTACCTGGAAAGTCTCATACTTGTCAAGCCAAAACAGTGGCCTAGTTTACTCATGTTACCATGTCGTAA TTTTTAAGGATGTTGATGGGTTGTGTACACTGTTTTCCTGGTCGGTGTGACTGCATAGAACACACTGACACTTGATTCAT TCAATAGTAGAACACATTTCAGCCCTGCAAATGGGGTTTAGGTTGCAGCTAGTGTTGGTATTGAATATATTGATGTTAGG AAATCTTCTTTTAACTGTTGAGCATTCAAGGTTGCTGAATGCTGTCTTGTTGGTTAGGCATGTGGTTTAGTTAGGCACCT TTTAATTAATTGGGTATTGGTTTGGCACCCTGAAGAAGATGTATTCTGAATGTGATGTTGATTCATCTTCTAATTCTTAG TGATATTGTGATGTTGTGCTCTTCTTCATTTAACTACACTTATGCTTAATCCAGAAATCTAGAAGGTAACTCATTTTTAT GGCCATTGCACTGAAATCATCTTGCTTCTTCCAAGTGAAGAAACCTGAGGCTGGTTTCCCGGTTTATTTTTCCTCCAAGA AAGCTATAATCTCGGTGAAGAGAAACACTCCAGTGGCCGCTATCAGGACCATGGAAACAGTTGGGCTCTCTGAAACTTTC AGCAGGTTGAAAAAACAAGGCAAAGTAAGGGCTTATTCCATGTTTTCTATTGTGTCACATGTCAACTTGAATAGTATGGA ATATGGATTACCTACTTGTTTTTTCAACTATAATTAATCTAATTTTTGCTGGTTCCATTTTCTATTATTTGCCAAATCAA TGACTTTTCTCTGGCTAGTCATAATGGATTAGAAACTATCTTTATTTGTGGGTTGAATATTTTTGACACCACTGCTACAT TAACTTTATTGCAAAGAGATGAGTTAGAGTGCTATTCTTGGCTGCCTATTGCCAAATGATTATTTTCTGACGAGTATATT TGTGTCTAGGTGGCTTTCATCCCATACATTACAGCTGGGGATCCTGACCTTTCAACCACAGCAGAAGCACTAAAAGTGCT TGATTCATGTGGATCTGACATAATCGAGTTAGGGGTTCCATACTCTGATCCTTTGGCAGATGGTCCTGTTATCCAGGTCG GTTGCTTTCTTCTTTTTCTAGTGATATTTACTTATTTAGTAATACTGCCTGATTCTGATTCTCAAACTGATTTATCTTTC TATTCAGGCTGCTGCCACACGATCTTTAGCAAGGGGGACCAATTTTAATGCGATTATTTCTATGCTGAAGGAGGTAGATT TTTGTGCAACTACTTGCCATTTATTAAATAATACTGTCAAAAGCTGCCGAAAGGAAGCTCTGCTGCAATAATAAATTTTC ACTCACAAATCATTTTATTATTGTATGATTTCTTGCGGCTTGTCTTCTTTGTTTACAAATTATGTGTACAATTATCGAAA GTTTCCAATTTGTTAATGCCGTTTGAATCATTGATATCTATGCACCCTTGTTCTTGAAGTTGAAACAGATGCTATCAGAC CCCTAATCCTTTAATCCCTTAACCCTTATTATCATTGCCTATTGTCATGTTGTTAGACTTTGTTAGGGAAAATATAACTT GAATCAAGTACTTTTGTAATTAGTGATGCACTTATATCTCGTACACCTACATAAATCGTGTTGGCTTTTGTATAAGATAT GCTATAGCGGATGTATAGCTAATTTCTGATGCTATTGTTCATAATGAACGACACACTGCAAACCTTTTTTTAATGATACT TTCTACTGTCTCAGTTTCATTTGTTCATCACACTCCATTCATCTTATTTGAACTCGTCAAGCCATGATATGATGTATTCC ACCAATTTTAGCCTTTGGCAGGATATCTTTTATGTGCATTCTTATCTAGTTAAACCTACTATTCTAAGGAGAGGGTGTTC AGAAATCTTATGGCTTTGTCGAATGCATCTTCTCTTAGATTTATGGACTTATGATCTTTTTCAATGGTTAACTTCACAGG TTACTCCACAATTATCTTGTCCAGTTGCACTTTTTTCATATTACAATCCAATACTGAAACGTGGTACTGATAAATTTATG TCCACCATAAGAGACAGTGGCGTACATGGTGAGACTCAACTCAAATAACATTTTTCCCAATATCATAGCATTACATTGTC ATATACCGCTATTGGGCCAATTTTCTAATTAACTGCTCTCTCCTCCCATGTCCTGGTTAAGGTTCTATATGAGCTCTGTT TACATGAAATTTGCTTGTGTTTTCCCCCTTTTTCTCTAGTTTGGTTATCAGGATAATCTTTTCTTTCCCATGTGTGCAGG GCTTGTAGTCCCAGATGTTCCCCTAGAGGAGACAGAAATTTTAAGGACAGAAGCTAAGAAGAATGGAATTGAACTGGTTT GCTTAACTTTGAAATGTTCTCTTACTGCATTTCTGGATTTCAAATGGATATCCTTATAATGTTGCTCATAATGATAGAGA AATAGTGGTTAACTTCATTTTATTTCCTTTGTAATATGAGTCTATAAATATGAAATCCACAAGTTAAACATGACAAAAGA AGATTGGTAGTGAATGTGGACCAATGAAATTTTTTATGATTAAAAACACTGTATTCTATCTCATTATGTTTTGATTCAGT TTGTATAAATTTGTTGGTGGTATATATCGTTTAACATTTTCTGGTATGTTTAATTTTAATTTTAATTGTAAGATATATGT ACACGCATTGATATATTTGCTTTTTTTTATGTCATTCAGGTACTCCTAACAACACCCACTACTCCAATAGACCGAATGAA AGCCATTGTTGATGCTGCAGAAGGATTTGTGTATCTTGTAAGAGCTTCTTTCAACCATGATAGCTTCTTTCTTTGAGTTC CTCTCTTGTCCCAAATTTTGGGAAACGAGATATAATAATAGTCAAAATGGAAAATATCTTGCATAACTTTCTCAGGTCGA GATGTTGAGCCATTTGTTGATTTAAACTGTAGGTAAGCTCAGTGGGGGTCACCGGAGCCCGAGCATCTGTTAGTGATAAA GTTCAGGCTCTTTTGCAAGAAATTAAAGAGGTTTGCCTATTTAATCTTGGTCTGCATTCCTGTTGTATAATATTCTAGTT ATCTTATCAATAGCATTTCTGTTTTAGTGTTTTCAACTTGAGCATCGCAAAAGTCTTTTAAAAGCTACACCTTGTAGCTT ATTATTTTACACGATTCGAGTGAAAACATGGTAACCTGACTCATAACCAAAAATACCGCAATTCTGAAAAGTTTGAAATC TCTTTCCCTCCTTTTTTAGCCTTCCCCTTGTCCTCTCTTTACTCTTTAGTTGCAAAGCTCATCAATTGAGATTGATATGA TAGTCCAACATGGAACTTGGTGAATCTTATATATTTATGCTCTTTCTTAATTTTTTTTTTGTTCAAATTAAGGCAACATC AAAGCCTGTGGCAGTTGGTTTTGGAATATCAAAACCAGAGCATGTGGAACAGGTTAGTTCTTTGTCTACTTTATAACATG CTTCAACTTCATGTTCAATGTGGTTAATATAATCAACCATATACTTTTTGGTTACAGGTAGCAGGATGGGGAGCTGATGG TGTGATTGTTGGCAGTGCTATGGTGAAGATACTTGGTGATGCCAAATCTCCTCAAGAGGGATTGAAAGAACTGGAAAACT TCACTCGCTCCTTAAAATCAGCACTTCCTTGAAATTCAACCTCAGAGGGCGCGAACTTCTAATAGTTGTTTTCTTCATAC AGATTATGGATTGAATAAGGATATGATAGTTTTTATTTTTTTTATGCTCATCATGTACTAATACTATGATCAAGTTTTGT TCCTTTTGGATTATGGTGGGAACTGATCTTCTTTACTTAATTAAATGTCCATTATGAGATTCTTCTTATTTCTCTAATGA GCTATGCCAACTAGTTCCCTTATGGTCTGATTGATTCAATGTTTATTAGTCTTCTAATCCTTCTTTCCCTTGGCTGGGTA GCCAGGGCTTGGCTGCCTGTTACCCATCAAGCAGTTATGCTTGGGTCACGGATAGTGATAAGTTGCCCTCCCGGGGAGGG AGTATAGTTCCTTTGCTGCCTTCTTGTATTTGCTTGCCACAAGATAGATGGACACTCATATGCTCAAGTTAGCAAAGCTA AGGAGAAATAAGGATTATTGGTTGATTCCAAGCTATTCTCATACTCGACAATCATGAGACTAATTTTATTTTTTAATTTG ATCTTGTGTATTTATTACGTTTTCTTAATTTAAAATGATACTACATTCTCATATCATACTCGGGAGTATCCATCTTTAGG TTTTTTTTTTTAAAATTGTATCTTTAGTTAATAATAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0714100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCATTGCACTGAAATCATCTTGCTTCTTCCAAGTGAAGAAACCTGAGGCTGGTTTCCCGGTTTATTTTTCCTCCAA GAAAGCTATAATCTCGGTGAAGAGAAACACTCCAGTGGCCGCTATCAGGACCATGGAAACAGTTGGGCTCTCTGAAACTT TCAGCAGGTTGAAAAAACAAGGCAAAGTGGCTTTCATCCCATACATTACAGCTGGGGATCCTGACCTTTCAACCACAGCA GAAGCACTAAAAGTGCTTGATTCATGTGGATCTGACATAATCGAGTTAGGGGTTCCATACTCTGATCCTTTGGCAGATGG TCCTGTTATCCAGGCTGCTGCCACACGATCTTTAGCAAGGGGGACCAATTTTAATGCGATTATTTCTATGCTGAAGGAGG TTACTCCACAATTATCTTGTCCAGTTGCACTTTTTTCATATTACAATCCAATACTGAAACGTGGTACTGATAAATTTATG TCCACCATAAGAGACAGTGGCGTACATGGGCTTGTAGTCCCAGATGTTCCCCTAGAGGAGACAGAAATTTTAAGGACAGA AGCTAAGAAGAATGGAATTGAACTGGTACTCCTAACAACACCCACTACTCCAATAGACCGAATGAAAGCCATTGTTGATG CTGCAGAAGGATTTGTGTATCTTGTAAGCTCAGTGGGGGTCACCGGAGCCCGAGCATCTGTTAGTGATAAAGTTCAGGCT CTTTTGCAAGAAATTAAAGAGGCAACATCAAAGCCTGTGGCAGTTGGTTTTGGAATATCAAAACCAGAGCATGTGGAACA GGTAGCAGGATGGGGAGCTGATGGTGTGATTGTTGGCAGTGCTATGGTGAAGATACTTGGTGATGCCAAATCTCCTCAAG AGGGATTGAAAGAACTGGAAAACTTCACTCGCTCCTTAAAATCAGCACTTCCTTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0714100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAIALKSSCFFQVKKPEAGFPVYFSSKKAIISVKRNTPVAAIRTMETVGLSETFSRLKKQGKVAFIPYITAGDPDLSTTA EALKVLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAIISMLKEVTPQLSCPVALFSYYNPILKRGTDKFM STIRDSGVHGLVVPDVPLEETEILRTEAKKNGIELVLLTTPTTPIDRMKAIVDAAEGFVYLVSSVGVTGARASVSDKVQA LLQEIKEATSKPVAVGFGISKPEHVEQVAGWGADGVIVGSAMVKILGDAKSPQEGLKELENFTRSLKSALP
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43406
1 310 310 1.7E-164 –
PANTHER
PTHR43406:SF4
1 310 310 1.7E-164 –
Gene3D
G3DSA:3.20.20.70
48 311 264 7.8E-110
IPR013785
SUPERFAMILY
SSF51366
50 290 241 3.2E-89
IPR011060
Pfam
PF00290
54 309 256 2.0E-96
IPR002028
TIGRFAM
TIGR00262
54 307 254 4.7E-93
IPR002028
Hamap
MF_00131
60 309 250 36.671
IPR002028
CDD
cd04724
64 307 244 1.47673E-117
IPR002028
ProSitePatterns
PS00167
94 107 14 -
IPR018204
Coils
Coil
231 251 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0004834
Molecular function Tryptophan synthase activity Catalysis of the reaction: L-serine + (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O.
Subterm of
GO:0006568
Biological process Tryptophan metabolic process The chemical reactions and pathways involving tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0714100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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