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LotjaGi1g1v0714800.1

Overview

Field Value
Gene ID LotjaGi1g1v0714800
Transcript ID LotjaGi1g1v0714800.1
Lotus japonicus genome version Gifu v1.2
Description Histone H2A; TAIR: AT3G54560.1 histone H2A 11; Swiss-Prot: sp|O23628|H2AV1_ARATH Histone H2A variant 1; TrEMBL-Plants: tr|I3SM38|I3SM38_LOTJA Histone H2A; Found in the gene: LotjaGi1g1v0714800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:128275184..128281645) extracted from Lotus japonicus Gifu genome v1.2.

GGGAAAAACACTTTAGCTTTCATTCTTGTGGTTAATGCACCTATTCAGTTTATTCTTTTAACCCTCTCATTTGTATATTT TATATATTAAAAATTATGACATTAGTTGAAATATATTTTTCTATTATTAGTTTATTCATTATGCTGTTATTATACTTTCT AACCTCCTCTCTGTTTATTCTTTAAACTCTCTAAGTAGCCCAATTTTCTTTTTCAGCTCCCCAATTGAGATAAAATCAGA ATTTTAATAGCATCGCTCACCACTGTATAAAAGAGATACTACACTTCAACATTCAACCTTTATCATGTTCCTAACATGGG GTGAATAATTCATTCAGTTTTCATTTTATATAGTTGTCCTCCTTTTTTATACCATGGAACCCACAAAAGTCTCATACTTC AATCAAGGCTCCCACTATAAAATCTGCATCAGTGAGAATATTTCAAGCCAATTACTCAGCAATGTCATTGCACTATAAGA TAATTACCTCCTAAATATATGAGTTAACTTTTCATGATCCAAAGAGTTCCACTATAAATTTGTAGAAGTTATGAACACAT CTAATAAAGTGTTTGAGTTTTCCTATTGCCAAGTTTCCTGACAATATATCAATAATGATAACAATGAAACCTGATTAGGA GGCTAGAGTAATGAAAACTCAATCCTCCGAACTCTAAAGATCATGGTGACATCGAATATTTCATCATTGGTCCTTTAAAA TTGTCATCAATTCATCATATCAAAGTGTCACCTCAATAACCTGCCTCAGAATTATTTATCGCATTAGTATCTATGATAGT TCTAAATCTTCATAGTCCATTTCAGTGACAGCTAACATTCTTGATAAACTTCATTAGCTAATTTCACTTAACATAATGAG TCTATTGTTCTTGCATATTTGGATGTAATGTTGTAACATCTCTTCCTCGAAAAGCCAGAAAGTATGGCATTCGACGACCA ATTCCCAAACTTCTTACATTGCTCTATGGACTAAGCATTCATCTTTCCAATGACAACCTGAACAATAAATTAAACATGAT TATCATCATTCGAATTCTGATATGAAATGTTAAAGAACAATTATAAAATAAAAGCTCAAACATTAGATAGAAATGACTTG GTCATAGAAATAACTCATCATCAAAATCCACAAAGACCTCTCACAAATGTTTTCATAAACTAAATGTAAATAATTACACG CTTTCAAGTTGTTGGAGAAGGTCACTACAACACTTCTTATTAGAATTGAAACTTATTCATTAATATTTGCAAACTTCAAC TAAATTGGCTCACCATCTGTTCACCAAAAATGCCAAGAAAAAAAGAGGATTGAAGAGAAAGAGGAAAAGTTTAGGAAAAT AAATAAAAAAAGGTACACTTAGTTGTTTCTCCCTCGAGTTCCAAGAGTGAATTGAAATGATGAAGAAAAAAAAATCCACT CGTTTAACCGACTCGCTATATTACAAAGAATTGAATAAGATAATGAGAATAAGAATGCAGAACAAATGGATTTTGGGGTT GGGATGACTTTAAGGTCTTCTGCAACCAACCAACATGCATTGATACACTTTAAAACTTAATACCACTGTAGTTAAAATTA GAATTATAATATAGTTATATTAAGAACTAACTTGAAGATCAATGATAAAAGAGAAAATCCTCTTTTCTAACGCAACCAAT ATAGGCACCCATAGATTAAATTAGGATAGAGGAGCAAGCATTAAAGGAAAATGAAACCTGTGGAAGGAAGGCAGAAGCAT TCTAATTTTCTCCATCAAACTCATCATTATATGTACCAGAAAGTTGACTTAGTAAGTCCTACAAATAAAAAAGATAGATA TAAGTCCCAAAACTAATCAGCAATAAGGCTAGGGAAAATGCAGATATTTGAGTTTGAATTACAGCAGCAGTGTGCATGAT ATGAGTACTTAGAAAAGTTCATAAAGGCTCTAGAAAATCTAGCTCTATTTGACTCTAAACAACATATAACTGAGTTAGCA AATATCCTTCATAAAATAAAATTGTAAGAGATTCCAATTTCTGAAACTTCCAACTAATCCATTGATTTTTAACCAATCCC ATTTATTTTAGAGATATGCTTGCTCAATAAACTTATGTTCAATAAACTACTGATGCCAACAAAACTAAGGTATACCTGTA CAGATTTTGTTTCCTTTCCTCTGCTCACGGGCCTGCATCCTGTTCAGAATCATTGATTTTAATTAGATGCAACACTTCTG AATAGCAGACTGGAGATTAGAGAAAAATAATGAAGTTAGCTTACTTAACATTGATAAAATTAAATGTTATTGAATTGAAA TCTTTGGACCTTGACAGCAGAAACAATATTGAATGTCATCTCCAAAATCTTACCTAGGAAACAAAAGGAATGCCACGACA TTGAGCTAATAAATCAAACATTGAGCTCGAAGTCGTAAGATTTTTTAAAGAGATACACTTCAAACTATTGCTAAGAGTTG TGAACAAACCCATCAAGAACTTTAACATAAAATTACCATAGTATAAAACTTGGTAGCAAATGATTTATGCATATACCTTG AAATTTAAAGCTTCTGCCACCATTAACACATGATCTGAGAAATAGAACAAAAGTTCCAAAAATTAATCACTGAAAGTAAC GCATTGTTCTTCATAATCTCATAGCAGAATGAATAATCGAAATGAAACCTAACACACCAAATTCATCTCAGTATATTATA GGTCATCAAACTAAGATTCTTTATTTTGAGGAAAGGACCTCTTGTTTCTTCACCCTAAAAAACACCAATAAAGAACAAAT TCTTTACTGATCAAAACTTTGGTTCTCTTGCAAATCCAAAAAAAAAACTTTTCTTATAAATCTACCATTGTCAGATTAGG TTCAAAAAATTAAAAGGTATTGAAATAATTTAAACTCAATGTCATTTTCTCACCTCCAATTGGCCATATGTCCAGTAATG CTACAAATGTATTGATTTGCCAAATCTGTAGTTCCTGAAACAAAACATCAAAGAACATGAGTTTTCCATGAAGATGATCT TAGCTCATCAGGGGTAAACTTCAGAACTCAAGAAACCAAAATAGCTCCCCAACTCGGAATAAATAAAAATACCTCTGAAA ATCGTCCTTGCCAGTGAAGCAGCGGAGTAACGGGAAAGAAAATTTCAACTGTGGACAACATGAAAAGGAAAAGTTAATTA GAAAGCATAATGCGGTTGGTTAAGTTCAGAACGTGGAAGAAAGGAGAAAAGGACTCACCCAAAGAAACCTGAGAGGATGC AGGCATGGAAAATGGAGATAGAAGAAGAAGGAAAAGAGGTAGATGAGGAGATGAATTGGGAATCTGAGTTCTTTCAAATT CAGAATTTAAAAAATTAGCATTTGTATTGGGGAACTGAGGAGGAAATGAATTTACCATGATGTAAATATGAGAGCCTCAA TTAATTTAGTAGTGGGAATGCACACATGTAATTGGCCAAAATAAAGATAGTGGGGGCGGTGGTATTGGAAAAGAGGAGTA ACTGGGGAAACATCTAGAGAAGAAATTTGATTGGTGGAGTGAAAGGTGGAAGGGGGGAGGTTAATTAGTAACAGAATTAA TAAATTTAATGCTCAAAATTTAAATTCAAAATGGCACTAAAGGAAGACAGAAGACGGATTGGGGTGCTAGTGGGAATGAA CATTGTTTATTGGACAATGAGGGGTAGACCAAATTGAAAAAGAAATGGATACAAACAGTCTGGAAAATATTTGATGAGGT TGGGGGAGGAGAAAGATTAATGAGTTAGTGGGAGAGAGAGAGAGGATAGGAAGGATGAAGGGAATAAACTCTAATAAAAT AATGGGTGAGTGAATAAAATATTGTAGTTTATTCAGATGGGGGAATAAAATATTGCCAAAAATTTGTGGAGTTGACACAT CAGCTAACAACTTCTTATAATGATTCTGTTTTAATATATGTATATATGTATTGATTGATGATTGATTGATGATTGATTGA TTGGGGTGGGTGAGACAATAAAATCATGACCTTATGAAGAATGGGCCGGGGTTGTTGTTTTAGCCCAGGCCAGATATTGG GAATGAAAATGTTTGTTTGACCCCTCCAAAAAATTGAAAATGTTTGAAATGAAATGAAAATGCAAATTCCCTCCCACACA CGCGCGCCATTTTGTTTGTAAATTCAAAACGAAAACAAGTTGATTTCACTTTCACTTTCCCTCTCAATTTAATGCCATTC ATATGACACATCACACTCCACACACTCATTCCATTTCTCTCATTCGTTCGTTTTCACTGCATCGGTGAGTTTCTTCTCTC TCTCTCTCTCTCTCTCTCCAAACCCTAACTTTTTCTCCATCGATGCTTCGAAAATTGCTTCGAATGACAGTTTTCATGTG AAAAACTCTTCAATTCGATTTCAATTTTGTTTCTGTGTATAGATCTGGAATTCGAATAATCTCTGATTTTGGTTTCACTG ATTTTGTGTTGCTTCAGGTAAGGTAAGGAATGGCGGGAAAAGGAGGAAAGGGGCTTCTGGCTGCCAAAACCACCAAGGAC AAAGCCAAGGAAAGCGATAAGAAGAGGCCTGTTTCTCGCTCATCCCGTGCTGGGATTCAGGTAACCCTAATTAATTTCCC CTCTTTCATGTCAGATTTTGTTACAAAGACTATGAACAGACCCTGATCTGACATGGATAGGAGTTATACTTCACATGAGA TGCTAAGTTAGAAATCAATAATCTTTTTTTGTTTCTGTTAGAAATTGTCACTGTTTTAGAAGATGAATTTGATTTTGTGG TTTTGAAAACCCTAATTTTGCTGTTTATGTGTGTTTACCTCCTGATTTGCCCCTTTTTGTTTGTTTTGCCATATGTGGGT GGTTGTCGTTTCCTGTGGGTAACCCTTTTTGTTTCATTTTTCCCTCTTTCATGTCAGATTTTGTTGTTGTTGACTATGAT AATGTTACATAACTATGAACAGCACAAGATCTAACTAGGATAGTAGTCATGCCCCTCATGAGATGCCAAACTATAAAGCA AGATTGATTTTGTCTTTGTTATAACATAATTGGACACACATTCATATCTTTCAGAATTAATTCTGCTACCACAATCAATT AGGGGTAGCTTCTTCAAAAATCAATTCTCCTTTCAATGTGAAGACTCACTGTGTATCCAAACATGTACTATGTAATAGTG ACTTTATGAGATGAATAATGAATTTGCTGCATATGTTTGTTTACCTCCTTAATTTGCACTTAGTAATAGTGACTTTATGA GGTGAATAACGAATTTGCTGCATATGTTTGTCTACCTCCTCACTTTCCTTTTCTTTTGCCTCTTTTGGTTTGTTTTGGCA TGTGGGTTGGTTGTAGTTTCCAGTGGGTAGAATCCACAGGCAACTGAAGCAAAGGGCACATGCACATGGCCGTGTTGGGG GTACTGCTGCTGTTTACTTGGCCTCCATTCTGGAATATCTGACTGCTGAGGTGCTGGAGCTGGCTGGGAATGCAAGCAAG GATCTGAAGGTGAAGAGGATCACACCGCGTCACTTGCAGCTCGCTATCAGGGGAGATGAAGAGCTTGACACCCTCATCAA AGGAACCATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCTTGATCAACAAAACCTCCAAAGAGTGAATGGATT CTTAACTTGTTTCTGGTTTTATTATGTTGCCTGGTTATCTCAGTGGCCCCTAGTGTAGTTTTGGCCAGTCTAATTTACTG TTTCTTTACAATTCAGGTGTTAGAATGTAAATGCTCATTCTTAATTATGTGATTGCTTAACTAGTTTGACTTGGCTCTCA TACTCCTATTCTGGGATTGTAATGCTGTTGGATCCTTGACAGTGCTTTGTTTTTAGCTTCAATATGCAAATTAGTCGTTA TTTGTATTATTAGTAATTTCTGTCACTGGTATTAGCTTCTTTACTTTTAGCGTTTGCAATATATAAGTGCTTTTTTAGCA TCATTGTTAATGCAATTGCCAATGAGCAATATGAATATCAAATTTTAATTTTACTTGTGCCAAAATGCTTAACAAGTTCC CCTGTAATTGCCTCAGTTCCTGATAACATGACATGCCATGTTTTGGTCACTTCGTGTAGTAACTTACATGTTTAATTTCT TAGGGACAATTAGGTGCACTTTAACATTTCTTGGTATAAAATTTGTTCGTGACAGTACAAGTAACGCTTTCAGTTCTTTG AGCCATTCAACGTTTTGGCCACGGATTTCCACATCTTTAAAATTTAATCGACAGTTTGGTATACGATATACCTTCAAATG TGTGTTTACAATGTAAACGATTTACTAATTTGTCAATTAATTTTAAAGTGATATCTATCAACGATAATCATGTTCTTTTC TATTCTGAGACTGTGTTGGTTACATAATCAAATGTGATAATATTTTTTATCATGAGTTGTAC
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0714800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGGGAAAAGGAGGAAAGGGGCTTCTGGCTGCCAAAACCACCAAGGACAAAGCCAAGGAAAGCGATAAGAAGAGGCC TGTTTCTCGCTCATCCCGTGCTGGGATTCAGTTTCCAGTGGGTAGAATCCACAGGCAACTGAAGCAAAGGGCACATGCAC ATGGCCGTGTTGGGGGTACTGCTGCTGTTTACTTGGCCTCCATTCTGGAATATCTGACTGCTGAGGTGCTGGAGCTGGCT GGGAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCGCGTCACTTGCAGCTCGCTATCAGGGGAGATGAAGAGCT TGACACCCTCATCAAAGGAACCATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCTTGATCAACAAAACCTCCA AAGAGTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0714800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAGKGGKGLLAAKTTKDKAKESDKKRPVSRSSRAGIQFPVGRIHRQLKQRAHAHGRVGGTAAVYLASILEYLTAEVLELA GNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 35 35 - –
PANTHER
PTHR23430:SF247
11 135 125 2.0E-77 –
MobiDBLite
mobidb-lite
11 30 20 - –
PANTHER
PTHR23430
11 135 125 2.0E-77 –
Gene3D
G3DSA:1.10.20.10
13 135 123 6.7E-52
IPR009072
Pfam
PF00125
14 104 91 4.5E-21
IPR007125
SUPERFAMILY
SSF47113
14 112 99 6.06E-40
IPR009072
SMART
SM00414
15 135 121 2.2E-67
IPR002119
CDD
cd00074
18 131 114 3.04754E-56
IPR002119
PRINTS
PR00620
26 48 23 1.9E-41
IPR002119
PRINTS
PR00620
56 71 16 1.9E-41
IPR002119
PRINTS
PR00620
71 84 14 1.9E-41
IPR002119
PRINTS
PR00620
85 99 15 1.9E-41
IPR002119
Pfam
PF16211
105 134 30 1.1E-10
IPR032454
PRINTS
PR00620
112 130 19 1.9E-41
IPR002119

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000786
Cellular component Nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
Subterm of
Part of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0046982
Molecular function Protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0714800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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