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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0716700 |
| Transcript ID | LotjaGi1g1v0716700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT1G03100.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9SA60|PPR6_ARATH Pentatricopeptide repeat-containing protein At1g03100, mitochondrial; TrEMBL-Plants: tr|K7MU73|K7MU73_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0716700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:128515007..128517337) extracted from Lotus japonicus Gifu genome v1.2.
ATGCTTGCAATACGGAAGGTCAAAACAGGTCCAGATCTTGCTTTTGTTTTACGTTTCATGGTTGCTACTTGCAATTATGG CAATGCCCGAGTTTCAAATAACAGAAGTCTCCAGTCTGTTGTTAAGTCTGTTAGCCCTTCTTTAGCCAACTCGCGTGCAC ATGCACTTCTACAAGGACTATATTTCTCAAGTATGGCCGAAAGAATCCTGGTCCAGGCTCAAGACCCAGCCAAAGTTAGT TTGGAAATAGAAAATGCTATCGATGAGAATCAATTAGATTATTCATGGAAGTTATTTGAGCAGCATATGCACATGGATGG ATTTCCCAGAAAATCTGTCTTCAACAAGCTTGTAACAAGTTATGTCGAAAGCCTTGATACGCAATGGTTGCGAAAAGCTT ATGAGTTGGAAGAACGTGCTATTGAGGAAGGTAAACACGACTTGTTAGAGAAGGAGGTGCTTATCTATCTTAGCCTTGGC CTTGCAAAAGCCGGACTACCTGTTCTAGCATCAACTATTTTAAGAAAGATGATTGGTATGGGCCATTTTCCTCGTGTCAC TGCTTGGTCTGCAGTTTTGGCGAACATGTCACAAACAGCTGATGGAAGTTACCTTGCTGCTGAGTTGATCCTTGAAATAG GTTATATGTTCCAAAACAACAGAGTTGATCCGCGTAAAAAGAGCAATGCACCTTTGATAGCTATGAAGCCAAACACGGCT GCTTTTAACATTGCGTTGGCAGGTTGTCTCTTATTTGATACATCTAGAAAGGCAGAGCAACTTCTTGATATGATGCCTCG AATCGGCGTCAAAGCGGATTCAAACTTACTAGTAACAATGGCACGCATATATGAGAGAAATGGGCGAAGAGAAGAGCTTA AGAAGCTGCAAAGGCACATAGAGGACGCTCCAAATCTAACTGATATACAGTTCCGACAGTTCTACAATTGTTTGCTCACA TGCCATTTGAAATTTGGGGATCTAGATTCTGCATCGAACATGGTTTTAGAAATGCTTGGGAAAGCAAAGCAAGCAAGAAA TTCACTTGCCGCTGCCAAATTTATTAATGGTGCAGCAAAACTTGATCATAACTATTTTCCTGGACCAGCTTCTGTGCATA GTTTGAGCAACAGTGAGGTTATGGGTAGTTTAGAAAATAACCAGCCAATAAGATCTGCTTTTTCATCTTATGAGGAGTTC TTGAAAGATCGAAACTTCTTACAGCTTGAAGCAGAGTCAAATGCTGTGCTTGGTTCTTTATTAGCTAAGCTGCAGAAACA TGTTGATTTGATTACAACCAAACATGGTATTCTGCAACCCACTGAAACAATATATGTAAAATTAGTTAAAGCTTTTCTAG AGGCCAACAAGACCAAGGATTTGGCAGTGTTTCTTCTCAAGGCAGAGAGAGAAGATTCCCCATTTTCCAATGACAATTCA GCCTTGGTTCATGTTATTAATTCGTGCATCTCACTTGGATGGTTGGATCAAGCACATGATCTCCTTGACGAGATGCGTCT AGCTGGAGTTAGAACTGGCTCATCTGTATATGCTTCTCTCTTGAAAGCATATTGTCAAGCAAACAGGGCTGCGGATGTCG CATCGCTTTTGAGAGACGCTAGGAAGGCCGGTATCCAGCTTGACTCAAGCTCTTATGAGGCAATGATCCAATCCAGGGTG CTCCAGGAAGATACAAAGGGAGCACTCAAACTATTTCAAGAGATGAAAGAGGCAAAGATTCCGAAAGTTAGTCGACAGAA CCCTGGCATGCTAACTAAAAGTGGTGCTGAAACAGATGAAGCCACCCTGATGACAAAGCTATTGCATGAAATCAAGGAAG GACAGAGTGTGGATTGTGGGGTTCATGATTGGAATAACGTGATCCACTTTTTTTGTAAGAAGAGACTAATGCAAGATGCA GAAAAGGCTCTGAAGAAGATGAGAAGCTTAGGCCACTCACCCAATGCACAAACTTTCCATTCGATGGTCACTGGGTATGC TGCCATTGGAGGCAAATATCTGGAGGTAACCGAGCTGTGGGGTGAGATGAAATCTCTTGCTTCTTCGTCATCCTCCATGA AGTTTGATCAGGAACTTCTAGATTCTGTGCTGTATACATTTGTGAGGGGTGGATTCTTCACTCGAGCCAATGAAGTCGTG TCCATGATGGAAAAGGGGAAAATGTTCATTGACAAGTACAAGTACAGAATGCTATTCTTGAAATATCATAAAACACTTTA CAAAGGCAAGGCTCCCAAATTTCAGACAGAATCTCAGCTAAACAAAAGGGAAGCAGCCATTGCTTTTAAAAGGTGGATAG GCTTGACTTGA
CDS sequence (LotjaGi1g1v0716700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTGCAATACGGAAGGTCAAAACAGGTCCAGATCTTGCTTTTGTTTTACGTTTCATGGTTGCTACTTGCAATTATGG CAATGCCCGAGTTTCAAATAACAGAAGTCTCCAGTCTGTTGTTAAGTCTGTTAGCCCTTCTTTAGCCAACTCGCGTGCAC ATGCACTTCTACAAGGACTATATTTCTCAAGTATGGCCGAAAGAATCCTGGTCCAGGCTCAAGACCCAGCCAAAGTTAGT TTGGAAATAGAAAATGCTATCGATGAGAATCAATTAGATTATTCATGGAAGTTATTTGAGCAGCATATGCACATGGATGG ATTTCCCAGAAAATCTGTCTTCAACAAGCTTGTAACAAGTTATGTCGAAAGCCTTGATACGCAATGGTTGCGAAAAGCTT ATGAGTTGGAAGAACGTGCTATTGAGGAAGGTAAACACGACTTGTTAGAGAAGGAGGTGCTTATCTATCTTAGCCTTGGC CTTGCAAAAGCCGGACTACCTGTTCTAGCATCAACTATTTTAAGAAAGATGATTGGTATGGGCCATTTTCCTCGTGTCAC TGCTTGGTCTGCAGTTTTGGCGAACATGTCACAAACAGCTGATGGAAGTTACCTTGCTGCTGAGTTGATCCTTGAAATAG GTTATATGTTCCAAAACAACAGAGTTGATCCGCGTAAAAAGAGCAATGCACCTTTGATAGCTATGAAGCCAAACACGGCT GCTTTTAACATTGCGTTGGCAGGTTGTCTCTTATTTGATACATCTAGAAAGGCAGAGCAACTTCTTGATATGATGCCTCG AATCGGCGTCAAAGCGGATTCAAACTTACTAGTAACAATGGCACGCATATATGAGAGAAATGGGCGAAGAGAAGAGCTTA AGAAGCTGCAAAGGCACATAGAGGACGCTCCAAATCTAACTGATATACAGTTCCGACAGTTCTACAATTGTTTGCTCACA TGCCATTTGAAATTTGGGGATCTAGATTCTGCATCGAACATGGTTTTAGAAATGCTTGGGAAAGCAAAGCAAGCAAGAAA TTCACTTGCCGCTGCCAAATTTATTAATGGTGCAGCAAAACTTGATCATAACTATTTTCCTGGACCAGCTTCTGTGCATA GTTTGAGCAACAGTGAGGTTATGGGTAGTTTAGAAAATAACCAGCCAATAAGATCTGCTTTTTCATCTTATGAGGAGTTC TTGAAAGATCGAAACTTCTTACAGCTTGAAGCAGAGTCAAATGCTGTGCTTGGTTCTTTATTAGCTAAGCTGCAGAAACA TGTTGATTTGATTACAACCAAACATGGTATTCTGCAACCCACTGAAACAATATATGTAAAATTAGTTAAAGCTTTTCTAG AGGCCAACAAGACCAAGGATTTGGCAGTGTTTCTTCTCAAGGCAGAGAGAGAAGATTCCCCATTTTCCAATGACAATTCA GCCTTGGTTCATGTTATTAATTCGTGCATCTCACTTGGATGGTTGGATCAAGCACATGATCTCCTTGACGAGATGCGTCT AGCTGGAGTTAGAACTGGCTCATCTGTATATGCTTCTCTCTTGAAAGCATATTGTCAAGCAAACAGGGCTGCGGATGTCG CATCGCTTTTGAGAGACGCTAGGAAGGCCGGTATCCAGCTTGACTCAAGCTCTTATGAGGCAATGATCCAATCCAGGGTG CTCCAGGAAGATACAAAGGGAGCACTCAAACTATTTCAAGAGATGAAAGAGGCAAAGATTCCGAAAGTTAGTCGACAGAA CCCTGGCATGCTAACTAAAAGTGGTGCTGAAACAGATGAAGCCACCCTGATGACAAAGCTATTGCATGAAATCAAGGAAG GACAGAGTGTGGATTGTGGGGTTCATGATTGGAATAACGTGATCCACTTTTTTTGTAAGAAGAGACTAATGCAAGATGCA GAAAAGGCTCTGAAGAAGATGAGAAGCTTAGGCCACTCACCCAATGCACAAACTTTCCATTCGATGGTCACTGGGTATGC TGCCATTGGAGGCAAATATCTGGAGGTAACCGAGCTGTGGGGTGAGATGAAATCTCTTGCTTCTTCGTCATCCTCCATGA AGTTTGATCAGGAACTTCTAGATTCTGTGCTGTATACATTTGTGAGGGGTGGATTCTTCACTCGAGCCAATGAAGTCGTG TCCATGATGGAAAAGGGGAAAATGTTCATTGACAAGTACAAGTACAGAATGCTATTCTTGAAATATCATAAAACACTTTA CAAAGGCAAGGCTCCCAAATTTCAGACAGAATCTCAGCTAAACAAAAGGGAAGCAGCCATTGCTTTTAAAAGGTGGATAG GCTTGACTTGA
Protein sequence (LotjaGi1g1v0716700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLAIRKVKTGPDLAFVLRFMVATCNYGNARVSNNRSLQSVVKSVSPSLANSRAHALLQGLYFSSMAERILVQAQDPAKVS LEIENAIDENQLDYSWKLFEQHMHMDGFPRKSVFNKLVTSYVESLDTQWLRKAYELEERAIEEGKHDLLEKEVLIYLSLG LAKAGLPVLASTILRKMIGMGHFPRVTAWSAVLANMSQTADGSYLAAELILEIGYMFQNNRVDPRKKSNAPLIAMKPNTA AFNIALAGCLLFDTSRKAEQLLDMMPRIGVKADSNLLVTMARIYERNGRREELKKLQRHIEDAPNLTDIQFRQFYNCLLT CHLKFGDLDSASNMVLEMLGKAKQARNSLAAAKFINGAAKLDHNYFPGPASVHSLSNSEVMGSLENNQPIRSAFSSYEEF LKDRNFLQLEAESNAVLGSLLAKLQKHVDLITTKHGILQPTETIYVKLVKAFLEANKTKDLAVFLLKAEREDSPFSNDNS ALVHVINSCISLGWLDQAHDLLDEMRLAGVRTGSSVYASLLKAYCQANRAADVASLLRDARKAGIQLDSSSYEAMIQSRV LQEDTKGALKLFQEMKEAKIPKVSRQNPGMLTKSGAETDEATLMTKLLHEIKEGQSVDCGVHDWNNVIHFFCKKRLMQDA EKALKKMRSLGHSPNAQTFHSMVTGYAAIGGKYLEVTELWGEMKSLASSSSSMKFDQELLDSVLYTFVRGGFFTRANEVV SMMEKGKMFIDKYKYRMLFLKYHKTLYKGKAPKFQTESQLNKREAAIAFKRWIGLT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 11 | 776 | 766 | 0.0 | – | |
| PANTHER | 11 | 776 | 766 | 0.0 | – | |
| Gene3D | 78 | 364 | 287 | 3.0E-13 | ||
| ProSiteProfiles | 150 | 184 | 35 | 5.853 | ||
| ProSiteProfiles | 238 | 272 | 35 | 7.41 | ||
| ProSiteProfiles | 311 | 345 | 35 | 6.303 | ||
| Pfam | 315 | 340 | 26 | 0.21 | ||
| Gene3D | 447 | 590 | 144 | 3.4E-17 | ||
| ProSiteProfiles | 478 | 512 | 35 | 8.243 | ||
| Pfam | 485 | 510 | 26 | 0.039 | ||
| ProSiteProfiles | 513 | 547 | 35 | 8.89 | ||
| TIGRFAM | 516 | 548 | 33 | 0.0029 | ||
| Pfam | 535 | 580 | 46 | 4.5E-5 | ||
| ProSiteProfiles | 548 | 582 | 35 | 8.484 | ||
| Gene3D | 591 | 765 | 175 | 1.4E-14 | ||
| ProSiteProfiles | 620 | 654 | 35 | 9.92 | ||
| Pfam | 622 | 667 | 46 | 1.6E-8 | ||
| TIGRFAM | 624 | 656 | 33 | 8.8E-6 | ||
| ProSiteProfiles | 655 | 690 | 36 | 7.848 | ||
| ProSiteProfiles | 696 | 730 | 35 | 6.062 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0716700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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