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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0721100 |
| Transcript ID | LotjaGi1g1v0721100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT5G52630.1 mitochondrial RNAediting factor 1; Swiss-Prot: sp|Q9LTF4|PP429_ARATH Putative pentatricopeptide repeat-containing protein At5g52630; TrEMBL-Plants: tr|V7CY83|V7CY83_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0721100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:129179888..129181674) extracted from Lotus japonicus Gifu genome v1.2.
CTCCAATCCCCCTCCCACAACTACAACCTCTGCAACTCTCCCTCTCAGGGAACTACCGCGCCATCTGCAACCACCTCCTC GCTCTAACCCACTCTCGATCCCTCCGCAGAGGCCTCCAACTCCATGCCCACATCATCAAAACCGGCCTCGAAACCATCCC TCTCCTCTCCCACCACCTCATCAACTTCTACTCCAAAACTCAACTCCCCAACTCCTCCCTCCAAGTCTTCAACTCCTCCC CTCACCGCTCCGCCACCACCTGGAGCTCCCTCATCTCCTCCTTCGCCCAGAACGACCTCCCCCATCTCGCCCTCGACTTC TTCCGCCAAATGCTCCGCATTGGACTCCTCCCTGATGATCACATTCTCCCCACCGCCGCCAAGTCCTGCGCCGCGCTCTC ATCCATCCACGTCGGCCTATCCCTCCATGCCCTCGCCCTTAAAACCGCATACCACCTCGACGTATTCGTTGCCAGCTCGC TTGTTGATATGTATGCGAAATGCGGGGAAATCGGGTATGCCCGGAACGTGTTTGATGAAATGCCCCACAGAAATGTGGTG TCGTGGAGCGGGATGATATATGGGTATGTTCAATTGGGTGAGGATGAGGAGGCTCTGAGGCTGTTTAAGCAGGTGCTCGT GGAGGAAGACGTCGGGGTTAATGATTTCACATTGTCTAGTGTTTTGAGGGTGTGCGGTGCTTCCACGTTGCTCGAGCTCG GGAAGCAGATACACGGGTTGTGTTTCAAGACGAGCTTTGACTCGTCGTGTTTCGTGGCTAGTTCTTTGATTTCGTTGTAC TCCAAGTGCGGGGCTGTTGAAGGAGCTTACCAGGCTTTTGAGGAGCTGCAAGTTAGGAATCTTGGGATGTGGAATGCGAT GTTGATTGCGTGCGCTCAGCACGCGCATACGAATAGAACCTTTGAGCTGTTTGAGCAGATGAAGAGTGTTGGCGGGGTGA AGCCTAATTTCATCACGTTTTTGTGCGTGCTTTATGCTTGCAGCCATGCAGGGTTAGTGGAGAAAGGCCAGCATTACTTT GAGTTGATGAAGAAGGACTATGGTATTGAACCCGGGTCACAACATTACGCCACCATGGTGGATTTGCTTGGCCGTGCTGG GAAATTGCAGGATGCGGTTCAGGTGATCGAGGAAATGCCTATGGAACCCACAGAATCTGTTTGGGGGGCTTTGTTGACAG GGTGTAGAATACATGGGGATACTGAACTTGCATCCTATGTTGCTGATAGAGTTTTTGAGCAGGGTCATGTGAGTTCTGGC CTTAATGTCCTGCTTTCTAATGCTTATGCTGCTGCTGGGAGATGGGAGGAAGCAGCAAGAGCAAGAAAGATGTTGAGAGA CCAAGGAATAAAGAAGGAAACTGGTTTGAGTTGGGTGGAGGAAGGGAATAGAGTTCACACATTTGCTGCTGGGGACAGGT CTCATGCGAAAACAGTGGAAATTTATAACAAGTTAGAGGAGTTAGGAGATGAAATGGCCAAAGCTGGTTATGTTGCAGAC ACTTCGTTTGTGTTGAAAGAAGTGGGTGGCGAAGAGAAGAATCAAACCATTAGGTATCATAGTGAGAGGTTAGCCATAGC ATTTGGCCTCATTACTTTCCCTCAGGAACGACCAATCAGAGTGATGAAGAATTTGCGTGTTTGTGGTGATTGCCACACTG CGATTAAGTTTATTAGCAAAATTACTGGAAGGGTACTCATTGTGAGAGACAATAACCGGTTCCACCGATTTGAGGATGGA AAATGCACTTGTGGAGATTATTGGTGA
CDS sequence (LotjaGi1g1v0721100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCCGCATTGGACTCCTCCCTGATGATCACATTCTCCCCACCGCCGCCAAGTCCTGCGCCGCGCTCTCATCCATCCA CGTCGGCCTATCCCTCCATGCCCTCGCCCTTAAAACCGCATACCACCTCGACGTATTCGTTGCCAGCTCGCTTGTTGATA TGTATGCGAAATGCGGGGAAATCGGGTATGCCCGGAACGTGTTTGATGAAATGCCCCACAGAAATGTGGTGTCGTGGAGC GGGATGATATATGGGTATGTTCAATTGGGTGAGGATGAGGAGGCTCTGAGGCTGTTTAAGCAGGTGCTCGTGGAGGAAGA CGTCGGGGTTAATGATTTCACATTGTCTAGTGTTTTGAGGGTGTGCGGTGCTTCCACGTTGCTCGAGCTCGGGAAGCAGA TACACGGGTTGTGTTTCAAGACGAGCTTTGACTCGTCGTGTTTCGTGGCTAGTTCTTTGATTTCGTTGTACTCCAAGTGC GGGGCTGTTGAAGGAGCTTACCAGGCTTTTGAGGAGCTGCAAGTTAGGAATCTTGGGATGTGGAATGCGATGTTGATTGC GTGCGCTCAGCACGCGCATACGAATAGAACCTTTGAGCTGTTTGAGCAGATGAAGAGTGTTGGCGGGGTGAAGCCTAATT TCATCACGTTTTTGTGCGTGCTTTATGCTTGCAGCCATGCAGGGTTAGTGGAGAAAGGCCAGCATTACTTTGAGTTGATG AAGAAGGACTATGGTATTGAACCCGGGTCACAACATTACGCCACCATGGTGGATTTGCTTGGCCGTGCTGGGAAATTGCA GGATGCGGTTCAGGTGATCGAGGAAATGCCTATGGAACCCACAGAATCTGTTTGGGGGGCTTTGTTGACAGGGTGTAGAA TACATGGGGATACTGAACTTGCATCCTATGTTGCTGATAGAGTTTTTGAGCAGGGTCATGTGAGTTCTGGCCTTAATGTC CTGCTTTCTAATGCTTATGCTGCTGCTGGGAGATGGGAGGAAGCAGCAAGAGCAAGAAAGATGTTGAGAGACCAAGGAAT AAAGAAGGAAACTGGTTTGAGTTGGGTGGAGGAAGGGAATAGAGTTCACACATTTGCTGCTGGGGACAGGTCTCATGCGA AAACAGTGGAAATTTATAACAAGTTAGAGGAGTTAGGAGATGAAATGGCCAAAGCTGGTTATGTTGCAGACACTTCGTTT GTGTTGAAAGAAGTGGGTGGCGAAGAGAAGAATCAAACCATTAGGTATCATAGTGAGAGGTTAGCCATAGCATTTGGCCT CATTACTTTCCCTCAGGAACGACCAATCAGAGTGATGAAGAATTTGCGTGTTTGTGGTGATTGCCACACTGCGATTAAGT TTATTAGCAAAATTACTGGAAGGGTACTCATTGTGAGAGACAATAACCGGTTCCACCGATTTGAGGATGGAAAATGCACT TGTGGAGATTATTGGTGA
Protein sequence (LotjaGi1g1v0721100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLRIGLLPDDHILPTAAKSCAALSSIHVGLSLHALALKTAYHLDVFVASSLVDMYAKCGEIGYARNVFDEMPHRNVVSWS GMIYGYVQLGEDEEALRLFKQVLVEEDVGVNDFTLSSVLRVCGASTLLELGKQIHGLCFKTSFDSSCFVASSLISLYSKC GAVEGAYQAFEELQVRNLGMWNAMLIACAQHAHTNRTFELFEQMKSVGGVKPNFITFLCVLYACSHAGLVEKGQHYFELM KKDYGIEPGSQHYATMVDLLGRAGKLQDAVQVIEEMPMEPTESVWGALLTGCRIHGDTELASYVADRVFEQGHVSSGLNV LLSNAYAAAGRWEEAARARKMLRDQGIKKETGLSWVEEGNRVHTFAAGDRSHAKTVEIYNKLEELGDEMAKAGYVADTSF VLKEVGGEEKNQTIRYHSERLAIAFGLITFPQERPIRVMKNLRVCGDCHTAIKFISKITGRVLIVRDNNRFHRFEDGKCT CGDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 148 | 148 | 1.7E-20 | ||
| PANTHER | 13 | 134 | 122 | 6.2E-79 | – | |
| ProSiteProfiles | 44 | 78 | 35 | 9.405 | ||
| Pfam | 49 | 75 | 27 | 0.0097 | ||
| TIGRFAM | 77 | 102 | 26 | 7.2E-4 | ||
| Pfam | 77 | 101 | 25 | 3.9E-4 | ||
| ProSiteProfiles | 79 | 110 | 32 | 5.36 | ||
| PANTHER | 114 | 341 | 228 | 6.2E-79 | – | |
| ProSiteProfiles | 146 | 176 | 31 | 6.862 | ||
| Gene3D | 149 | 379 | 231 | 6.0E-41 | ||
| ProSiteProfiles | 177 | 211 | 35 | 8.495 | ||
| Pfam | 177 | 224 | 48 | 6.1E-4 | ||
| TIGRFAM | 180 | 213 | 34 | 0.0011 | ||
| ProSiteProfiles | 213 | 243 | 31 | 7.169 | ||
| ProSiteProfiles | 249 | 283 | 35 | 8.166 | ||
| Pfam | 253 | 277 | 25 | 0.011 | ||
| TIGRFAM | 253 | 276 | 24 | 0.0014 | ||
| ProSiteProfiles | 315 | 349 | 35 | 6.895 | ||
| Pfam | 352 | 475 | 124 | 1.8E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0721100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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