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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0724000 |
| Transcript ID | LotjaGi1g1v0724000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Leucine-rich repeat protein kinase family protein; TAIR: AT5G06860.1 polygalacturonase inhibiting protein 1; Swiss-Prot: sp|Q05091|PGIP_PYRCO Polygalacturonase inhibitor; TrEMBL-Plants: tr|A0A0R0EYN3|A0A0R0EYN3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0724000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:129522624..129525421) extracted from Lotus japonicus Gifu genome v1.2.
GTACGTTTAGCTTCACAATATTCTATAAATTTGGACAATTCTCATACGTTCTTATCAAACCAAAAAATGGGAATCATGTT TGGAAATGCATTGCACTTCCTGTTGTTCATGCTGTTGTTCTCCCCTGTTGCATTCTCAGGTCGGTGCCATCCACAAGACA AGAAAGTGCTGCTTCAAATCAAGAAGGACTTCAACAGCCCTTACCTCCTAGCTTCATGGGACCCTAAAACAGCTTGCTGC GACTGGTATTGTGTCGAATGCGACCCCAAAACTCACCGCATCACGTCACTCATCATATCCTCCTCTATCCCAGACACAAA TCTCTCAGGCCCAATACCACCTTCTGTGGGTGACCTCCCTTACCTCGAGTACCTCGACTTCCACAAGCTTCCCAAGCTCA CCGGCCCAATCCAGCCCGCCATCGCCAAGCTCACCAAGCTCAAGTCCCTCTCCATCACCTGGACCAATGTCTCCGGCCCA ATACCTGATTTCTTGGCCCAACTCAAGAACCTCGACTCACTCTACCTGTCCTTTAACAACCTCTCGGGTCACATACCAGC CTCACTCTCCCGCTTGCCTAACCTATTGTCCTTAAATTTGGACCGGAACAAGCTCACAGGCCCAATCCCGGCCTCATTCG GGTTCTTCAAGAAGCCTGGGCCAAATCTTTTCCTATCCCATAACCAACTTTCAGGGCCCATTCCTTCTTCCTTGGGCCAG TTGGACCCAGAAAGGATAGACTTCTCAAGGAACAAGCTGACAGGTGATGCCTCCTTGCTTTTTGCGCACAACAAAAAGAC ACAACTACTTGACCTTTCAAGGAACTTGCTTTCATTTGATTTATCCAAAGTGGAGTTTCCGAAAAGCTTGACATGGTTGG ATCTTAATCACAATAAGATTCATGGCAGCATTCCTGTTGGACTCTCTGCGGTTCAAAATTTGCAGCAATTCAATGTGAGC TATAATCTACTTTCTGGTAAGATACCGCAGGGTGGGGAATTAGGAAAGTTTGATAAGTTTTCCTATTTTCACAACAAGAA CTTGTGTGGAACCCCACTTCCTAATTGCAAGTGATTAAGAAATTAAAGCTAGCTAAGTGGTCTTGTATCGACTTGTTCTG ACTTGAATTAATGTAAGACTATTTGAATAACCGTTTATATCTATTTACAACTTATTTTAAGTTTATTTCAATAATATTAT AAAAAGCACTTATAAACAAGTGCTAATGCGATAAATACTTACTTAATTAAGTTATATACCTTTGACAAAAAAAATTAAGT TATTCACCTAACCACATTTTAATCTATGTTTAGATAATATTTCCACGGTTCAATCAGAAGCAATCTCAACACTCATTTAT TTTTATTCACGTAATTATAATTCGAGATTTTATTTTAGAGAAAAAAAATCAAAAAACTATTCTCTCTCTTACCATATGAA TGAAAGTTTATTCGGATAAAACTTTTAAAATGAGTTTATCTGTAGAATAGATGCATAAGAGTATTTCTATTTAGTTTTAA ATATATTATATCTTAATCATTAAAATGCAAGAGTGAATAAATCACCACTTAGTACTTAATGTAAATAAAAAATTATTTGA AGATATTTGCATAGTACATACATTCAATAAATACTTAGAGTGAGAAAAAATATAAGATAAATAACTTGTTAATTTGTTAT ATATAAAGAGAATGATAGAGAAAAAAAATGAAATGTTTGTTGGATGTCTGCAACAATCAGTATCATTGCTGAAAAAGCCT TTTCAATTTTGTTGTTTGTTTGTTGTTTCAATCTTCATCTCTTAAGAGTGATAGTTATTTCACTTAAAACATACTTGATC TGATATTCTTTTAACATTATTGGCTAAAAACACTCTAACACTCAAGTTATAACATGTGTGAGAAGCGAGTGCCCGAATGA TAGCTCAAGTAGTAAGAGCTAGGCCGCTAGGGACATAAGGGTTGAGTGGGATGAAGGGTGAAAGGTCCCGAATTCGAATC CGGAGGAGGGATTAATTTACTAACATTTCTAACAACTAACATTTATCTATAAAAAAATGTGAGAAGCGGAGAAGAAGGTG ATGATGTGTGTACATTACATCTTGCACCTTGTATAGAGTTGGGTTTTGAGGACTCCGAGGTAAGGAAGTCTAGGGAAGTC TGAGGTTGGATCATTGGAATTTTTGACATGCTGTTTAATTGAACAGATAGGAGCAAGCTTGCATACTCTGTGAGAAATTT GAATGTCGCGCTCGTACCTCAAGTAAAGAGTCGTTGACTTCGAAAATGATGGGGTAAATTGTGACACAAGTTGTCGTGGA AAAGCAACCGATCATGGGAAGACCCCAATTACCATGATCTTTGTAGAGGTTAGTAGTGGCTTAGGGTAATTGACATTTGT CGTTGGATTTCTGAGGGGTGGGAAACCATGTTGAGTGGGGAATGCTCGTCAAGTGTTAATCGAATTTGGAGGACTAGCTG TTTTTACAGGCCTTCTATCATGGCCTATGGCCTGTCCTTATCGCTTTGCCTAAACTGTTCGTCAAGGTGATGGCTTGTAG ATGCGGTTCGTATGGTACCAGTTACTGAGTATCCAAACAATATTTTCTTGTCATTGATCGTGAGATAGAGGCCGGAAGGA TAGTGTACTTGTTCTTAGCCGATTGGTGAAAAAGCAAAATCTTATTCAAGTGCAATAACTCTTATCACAAATTCACAATG GGAGAGACATTCCATGGTAATAAATTAAGGGATGAGGATATTATGTTTATTCTTCTTATTACACTAATTAAATTTAAC
CDS sequence (LotjaGi1g1v0724000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAATCATGTTTGGAAATGCATTGCACTTCCTGTTGTTCATGCTGTTGTTCTCCCCTGTTGCATTCTCAGGTCGGTG CCATCCACAAGACAAGAAAGTGCTGCTTCAAATCAAGAAGGACTTCAACAGCCCTTACCTCCTAGCTTCATGGGACCCTA AAACAGCTTGCTGCGACTGGTATTGTGTCGAATGCGACCCCAAAACTCACCGCATCACGTCACTCATCATATCCTCCTCT ATCCCAGACACAAATCTCTCAGGCCCAATACCACCTTCTGTGGGTGACCTCCCTTACCTCGAGTACCTCGACTTCCACAA GCTTCCCAAGCTCACCGGCCCAATCCAGCCCGCCATCGCCAAGCTCACCAAGCTCAAGTCCCTCTCCATCACCTGGACCA ATGTCTCCGGCCCAATACCTGATTTCTTGGCCCAACTCAAGAACCTCGACTCACTCTACCTGTCCTTTAACAACCTCTCG GGTCACATACCAGCCTCACTCTCCCGCTTGCCTAACCTATTGTCCTTAAATTTGGACCGGAACAAGCTCACAGGCCCAAT CCCGGCCTCATTCGGGTTCTTCAAGAAGCCTGGGCCAAATCTTTTCCTATCCCATAACCAACTTTCAGGGCCCATTCCTT CTTCCTTGGGCCAGTTGGACCCAGAAAGGATAGACTTCTCAAGGAACAAGCTGACAGGTGATGCCTCCTTGCTTTTTGCG CACAACAAAAAGACACAACTACTTGACCTTTCAAGGAACTTGCTTTCATTTGATTTATCCAAAGTGGAGTTTCCGAAAAG CTTGACATGGTTGGATCTTAATCACAATAAGATTCATGGCAGCATTCCTGTTGGACTCTCTGCGGTTCAAAATTTGCAGC AATTCAATGTGAGCTATAATCTACTTTCTGGTAAGATACCGCAGGGTGGGGAATTAGGAAAGTTTGATAAGTTTTCCTAT TTTCACAACAAGAACTTGTGTGGAACCCCACTTCCTAATTGCAAGTGA
Protein sequence (LotjaGi1g1v0724000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGIMFGNALHFLLFMLLFSPVAFSGRCHPQDKKVLLQIKKDFNSPYLLASWDPKTACCDWYCVECDPKTHRITSLIISSS IPDTNLSGPIPPSVGDLPYLEYLDFHKLPKLTGPIQPAIAKLTKLKSLSITWTNVSGPIPDFLAQLKNLDSLYLSFNNLS GHIPASLSRLPNLLSLNLDRNKLTGPIPASFGFFKKPGPNLFLSHNQLSGPIPSSLGQLDPERIDFSRNKLTGDASLLFA HNKKTQLLDLSRNLLSFDLSKVEFPKSLTWLDLNHNKIHGSIPVGLSAVQNLQQFNVSYNLLSGKIPQGGELGKFDKFSY FHNKNLCGTPLPNCK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 24 | 24 | - | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| Phobius | 20 | 24 | 5 | - | – | |
| Phobius | 25 | 335 | 311 | - | – | |
| SUPERFAMILY | 26 | 334 | 309 | 1.16E-60 | – | |
| Gene3D | 26 | 335 | 310 | 3.9E-86 | ||
| Pfam | 29 | 66 | 38 | 1.4E-10 | ||
| PANTHER | 35 | 334 | 300 | 4.9E-103 | – | |
| PANTHER | 35 | 334 | 300 | 4.9E-103 | – | |
| Pfam | 124 | 183 | 60 | 5.4E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0724000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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