Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0724800 |
| Transcript ID | LotjaGi1g1v0724800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mitochondrial import inner membrane translocase subunit Tim22; TAIR: AT2G42210.1 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein; Swiss-Prot: sp|O48528|OP163_ARATH Outer envelope pore protein 16-3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|I3T3A7|I3T3A7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0724800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:129600987..129603404) extracted from Lotus japonicus Gifu genome v1.2.
AAAATTGACCCTGCGGAGCTTAGGTACTTGGAGAATGATGATTCATCACTCATGAAAACTATTAAGGGTGCAACGACTGG TTTAGTTGCCGGCACTATCTGGGGTACCGTCGTTGCCACATGGTATGATGTCCCTCGTGTTGAGAGAAATGTTGCTCTCC CGGGGCTAATTAGGACTTTCAAGATGATGGGCAACCATGGATTGACCTTTGCCGCCATAGGAGGAGTCTACATTGGTGTG GAGCAGTTGGTGCAGAACTTTAGGGGTAAGAGAGATCTGGTGAATGGAGCTGTTGGTGGATTTGTTGCTGGTGCAGCTAT TCTGGGTTACAAAGGTATCTCATTCCTCTAATAAATATTTGTCTGGGAATTTTCATGTTTTAATGTTTAGATTTTGAAAT ATTGTTACTGTTGTTGTTGATAATGGTGAACAAAATTCATTAAGTGCTTTTATGTTTGATCTCATAATCTAGTTCAGAGA TGGTAATGGAACATCGTATGAACAACGACTTGATCCATTTCATTCTGAAAATTAGTGTGCTTGATTGGTGTATTTTTTCT TCTTTTTGCCATGATTATGCTAGCTAGGTGGCCACTGGTGCTTTTGATGTCTATTAGAGTTGACACTTGTATGATGGGTT ACTTGAGTCCAATGTCAGACTCATGGTGAGTCAGCCATGCTGTTACATTGGTTAGGTAATTAAGTAGCTAGACATCTAGG ATTCCCAAGTCCCAACTACAAATGTATTTGTGTATTAAGCAACCTGCAAGAACAGAATTATCTTAGATTCTCTGATTCTC TCTCTGAATATCTTTGCTTGCATTCCTTCAATCGCTCCCCCCCCCCCCACCCACTGAACTCTGTCATTGTCTGCCAAGGA AAGCATTCTATCATTGCCTTTTTTGTGCTTCTCTGGCTTTGGAGAATTGATCTTGTGGTTGTGTGTGATTTACAGTGTGT ACTGGCAGGTGACCAATTCTTCGATCCATATATCCCTTGTGTCCGTGTTATTATTTCAGGAAGTAATTAAAAAGGCTTGT TTATTATATAGCAATCTCATATTTATATGGATATTTTATGCTCCTTTTCTGTCACTCTCGAGGATTATTATATCTGAAGA TTTTTTTGTCCCAAAAGAGAAGCTATGAATTATATGTTCTGAATTTCTTCCATTCAATTGTACTTGGTTCATTGTTTGGT GGCCTGATGTCTAAGTAATAACATGAAATGTAGTTTTTAGGAACTAGGGGGCTATACCCATGTTAGTATGCAGAGGCTCT CTTTTTTTTACTATTATTATTTCATTTCCTTATGTGACAAATTATAATGCTTCACATAAACGTTGAGAATGGTGATTTTT TTTCTTGCACTAAGCAACATTTTTCTTATTCCATGCATCCAATGATGCTTGTCCCCTAAATTGTTTCTGCTTTTGTGCTT CCTTTTGTTTTTCTAATCACACTGCTGCAAAATTCTTCAATCATTCGTATACAGTTAAACAGCGCAATATTCTTTAAAGA TTTACATCGGATAATTCTAGCTATTGAGGTTGAGGATGGATATGTGCCTGTAATCTCTGAAAGGGTCTACCTTATTAATA GTTGATTCTAACTACAACTCGTCATTTCCTCTTTGCTGCTAACTTTGTATGGAGTTATTAGTTATTACTAATTCTTAAAT GTAGCTAGTGTTGTTTTAGTTACAGTCCTATTTACCCGTGGGGAAGTAGCATATCTTCAAATATCTGTTCTTAATCTTAG CTTTTTAGACTTAACTAAAAATCCATTTATTTGAAGTTTTGACTTCTTATTAGTTGGTGACTTGGTGCTCTATTTGTTGC TTGTTTACATGAGGGTTTTGCAGTGAAAGGGTAAGACCTTAAGGGGGTAAAGTTTTCATTTTTTTGTTTTCAAATATCTG TTGCTTTAACCATTTCACCATATCGATATTTGAATGAACTCATCTTTTATAACCTTGATTACTAAGTTACCTCTTTAAAT CTGATATGAATTACTAAGATGCTTTTTAATCTAAGTATCTGCCATTGGATAAAATTATGTTTGATAAAATTAAGTTTGTC GAATAAGTTTAAAAAATCATTTTGTGTTTGTGAATCATGCGTAACACTAGTTTAAAACAATGGATGTGTTTGTGAATGAT GTGTAAACTTAAGTTTACAAAATGAATGTTGTTCGGATAGAATAAAATGAAATCACCTTGCATCAGACTGTTTTATAACA ATCTTTACGTGCTGTGGATTCTATTGTAGGAAGGAGCATCTCAACTGCACTTTCTGCTGGATCAGCATTGGCATTCACAT CTGCAGTTCTTGATTTCGGAGGTCAGACAATGAAACATGACGATGGGAAGGAGTACGCGGCATACACCACAAAGAAAAGA CCCAGCCCTGATGCATAA
CDS sequence (LotjaGi1g1v0724800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAACTATTAAGGGTGCAACGACTGGTTTAGTTGCCGGCACTATCTGGGGTACCGTCGTTGCCACATGGTATGATGT CCCTCGTGTTGAGAGAAATGTTGCTCTCCCGGGGCTAATTAGGACTTTCAAGATGATGGGCAACCATGGATTGACCTTTG CCGCCATAGGAGGAGTCTACATTGGTGTGGAGCAGTTGGTGCAGAACTTTAGGGGTAAGAGAGATCTGGTGAATGGAGCT GTTGGTGGATTTGTTGCTGGTGCAGCTATTCTGGGTTACAAAGGAAGGAGCATCTCAACTGCACTTTCTGCTGGATCAGC ATTGGCATTCACATCTGCAGTTCTTGATTTCGGAGGTCAGACAATGAAACATGACGATGGGAAGGAGTACGCGGCATACA CCACAAAGAAAAGACCCAGCCCTGATGCATAA
Protein sequence (LotjaGi1g1v0724800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKTIKGATTGLVAGTIWGTVVATWYDVPRVERNVALPGLIRTFKMMGNHGLTFAAIGGVYIGVEQLVQNFRGKRDLVNGA VGGFVAGAAILGYKGRSISTALSAGSALAFTSAVLDFGGQTMKHDDGKEYAAYTTKKRPSPDA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 141 | 141 | 1.4E-78 | ||
| Phobius | 1 | 22 | 22 | - | – | |
| PANTHER | 1 | 141 | 141 | 1.4E-78 | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| Pfam | 2 | 109 | 108 | 4.8E-15 | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| TMHMM | 7 | 25 | 19 | - | – | |
| Phobius | 18 | 22 | 5 | - | – | |
| Phobius | 23 | 45 | 23 | - | – | |
| TMHMM | 45 | 63 | 19 | - | – | |
| Phobius | 46 | 63 | 18 | - | – | |
| Phobius | 64 | 74 | 11 | - | – | |
| Phobius | 75 | 93 | 19 | - | – | |
| TMHMM | 76 | 93 | 18 | - | – | |
| Phobius | 94 | 98 | 5 | - | – | |
| TMHMM | 97 | 119 | 23 | - | – | |
| Phobius | 99 | 118 | 20 | - | – | |
| Phobius | 119 | 143 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | TIM22 mitochondrial import inner membrane insertion complex | A multi-subunit complex embedded in the mitochondrial inner membrane that mediates the inner membrane insertion of multi-transmembrane spanning proteins that contain internal targeting elements. In yeast cells, TIM22 is a 300-kDa complex, consisting of four membrane integral subunits, Tim22, Tim54, Tim18 and Sdh3, and a peripheral chaperone complex consisting of the small TIM proteins, Tim9-Tim10-Tim12. | ||
| Biological process | Protein import into mitochondrial inner membrane | The process comprising the import of proteins into the mitochondrion from outside the organelle and their insertion into the mitochondrial inner membrane. The translocase of the outer membrane complex mediates the passage of these proteins across the outer membrane, after which they are guided by either of two inner membrane translocase complexes into their final destination in the inner membrane. |
Expression pattern of LotjaGi1g1v0724800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…