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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0726200 |
| Transcript ID | LotjaGi1g1v0726200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Fatty acid desaturase; TAIR: AT3G12120.1 fatty acid desaturase 2; Swiss-Prot: sp|P48631|FD6E2_SOYBN Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2; TrEMBL-Plants: tr|I3S3W4|I3S3W4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0726200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:129723834..129729459) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAGAGGTAAATGAGTGATATGATAGTTGATGTAACAGAAAATGCAGAAAGTAAAAAGAAGAAAACAGAATGAGAAT AATATGTAAAAGTAAGGGAGGTGTGAGTATATCACAACTCTTTAATGAAATGCCTGTTGATTTTGTTTCTACATGGGTGC AATAATAAACTAGTGGTGACTACGCATTGAGCCATAGGGAAGAGAGGAAAAACAAAACTGACATATCGTAGGCAGATTCA CAGTCACAGAGTCCCAATCTCTCTCAAGTGGTGTAGCTGGCTAAGTGGCAAGAGAGAGAAAGAGTCAAAAGACAAAAGTG GGGGCATTGCGATTTGCAAACAAGTTAAAAAAATAAAAAAAATACCTCGCGGGCCCCACTCCCCTCGTGATTTCGGAAAG TGAGGGTGTGAAAGCAGTTTCGTTCCTCTTCCTCCAATAATAAATACCCCCACTCTCCCCACTCACGAGCCTCGCCTTCT CCCTCTTCTGCGCCGTCACACCTCTCAACAAACCACCTGCTTCATTCACACCTTCAGGTACCCCCTCCCCTCTCTCATTG AATGTGATGATTCTGATTAGTGATTTTCTGTTATAGATTTCTCTAGATCTATCATCACCTGTGTTAATGTTAATTTTCTC TCGTGTATTCATTCTCTGTAGATCTCTGTCATTCTATTAATTTATTCATCATCTCCATTTCATTTTCTCGTGATTTTGCA ATTTCTCTTCATCTCTCACCATTCGCGCACCTTCTCAATCGGATCTAATGAGGAATCTCCTATTTTCCGTTTTTTTTTTG TGGAAATTCTTTGGGGAGTTTGCTTAGTCTTCCACGAAACGTCAAATGTTGTTGTTGTTGTTGTTGTTCCTTTAATTTAT CGGTGGTTTATTAATTGATGATCTTATCTCTTCTCATCAATGGAGATAACATGTTTATGTTGGTTGCGTATGTGCGTTTC GTGAATCTGGATGAGATTACATGTTTATGTTGGTTGCTTATGTGTCTTCTATTCATTGAACGCAGGACTGATTAGAATGA TAAAATTAGAGAAGGAAAAGAGAGATAGGAAGATTTACTCAAATTATGAAATCAAATTTTAGTCATTATTCACTGTACTT AGAGAAAAATAAATAAGAACTAAGGGGTATAATATGAAAATAAATAATATTTTAAAAAAATTTAAAAATTTATTGTTCTT GTAAAAAAATGTGTGTTTTTACATAAGCAAAATATGATTTAGCTTTTTACTTATCACATGTTCCATGTTTATTCATGTGT ACCTCACTATCGTATATCTCTCACCTACCCTCACATTCATATTTTAATCTATTGTAATTTTTATCGATTACTACTTTCTC ATAAAGATTTTTTGTTTTAGCTTCCTTTAATTTTCCTTAAATGTTCTTGTTTTAGATGCATTTTTCATCTTTTTTTCGTC TACCGTCTCATTAATTGATTTTTATCACATTTTATATCAATCAACACAACTTTTCTCTATAACATTCTTTAAAAAAAATG CATTCTTCTCTATAACATTTATTATTTCTTGTTATTTAAAAAAACCTTTTAGTCAAATATACTGATGTTGATTTTTGTGT CATATGGAAGTAAGTATAGTTTTTACTACTTTCTAGTTGATGAATATCAAACATTTTGTTCTCTGAAATCCTCATTTATT TTCTCAGCGTATATAGTGATATTAATGAGCAGACATTCTTGAGAAATAGTCTTTGGACCACTTTGCTTGGAAAGTTAAGG ATATTTGTATTCTTTCCCATACGAGCTTTAATATCCTCTGCCGGACGACTCACCTCTAATTGTTTATTAAAGTTGATTTC CAATATTGTATACATTAGTTGTCACGCGCTACTTTTAATCCAAGCCCAAATGTATGATTATTGAAGTCTTATTCTTGGCA CACAAGTTGATATTGTATTTATTCATTTATTATTCTTCGTAATTGGAGTGTGGAGATAGACAAAATAGTTCAATTGATAT TTTTATATGTTACAATTGTTATTCATGGAAAAATTGTTTGATAACTATAGTGTTTTTTTTTTAATCAAAAATTAATTAAT GTAACATGATTTAAGTTTATTATTATAAAAAAGATCGTACTTACTAGTATATGTTTGATTTGGTTCTTATGTACTTTGAT ACCCTTGCTTGGTGGAAAAATCAATGGAATCTATGCATTTTGAACGGATATGTAGGATTTTGGTTTATGTTGTGAGCGGT TTTGCCAAATCCTTTGCCAAAATGGGTAATAAATAAATCTATTCTTATCACGAGGAGTTGATTTGAACTGAAATAAATAA GTTTTATATCAGGAACATGTTGCCTTTCGCTATTCATGCGGAGGAAAAGGAGGAAGGGATATATATTAAATATTTCTTTT TACTTAACTTTACTTTATTTTTGTTTAAATGATTCATAATTATGTATTTTTTCATCCTTACTGTGAGTCTTTACTCTTTA GAAAAAAGTTACTTTGAAAATTGTAAAGAGTAAAAGATTTAATTTAAAAGAAATCATTTTTTTTGAATAATATTGTATAG TAGAAGATATATTTAAATACTTTCTTTGACAAAAAAATTATTATATTTTTTAGTAGTGTGGAACAGCTAATGGTTTTTGT TGTATCCGAGCCTGCGAGTCATATGAAGAAATAATACATGTCGGGATCAGATGACCTATCATTGTGTCCCAGTAAGGACT GAAAATTAAATTCGATGCACCGTCCACCAGATTAACGTTACCTGTGTTTGTCACCACTTATTTTGCTTTTTCAAGTGCTA TACTTCATCTATTCTAGTTTTTTTGAAGTTATTCACTAGTCGGTAGTCATAAAACTAATTTATTGAGACTTTGAGATCAT ATTAAATGTATAGATTTTTTTCTAACAAACTCTTCGTCATATGCACTGTCCAAGGATAGAACCATGAACTAGAGGCTTTA GGTCAGTTATCTATCAAATGTGCTAGAGCTTATTATCTATTTTAGATTTCTATTTGACAATAAGTGTTCATGTTGAACTC GTGGTGTCGGTGTTCTGAACTGGTCTTAGATTAGCTGTAGGTGAGATAATAAATAATAATAATAACAAAGTAACTTACAC TTGTAGGTTATAATGAGATGGCAATTGTACCCTCTAGGCTCTATCACTTTTTCTTCCGGCTTCAGCTATGGTCCTTTACT TGGGGGTGAAAGGGAGAGAATGAATTTTCTATTTATAAAAAGGTCTTAAAATGGAGTTAGAAAAGAAGTTTAAAAACAAA ATTATTGTTGTAGAAAGTAAAAAATAGAAATTGCCTATAGGATGTGGAGTTCAATATGAGGTGTCAAATCATTCTTTGGA GCTGTATGATATTTTTATGCATTTCAACATGAATTGTAAATGGAACTTTTTCTCTGGATTAAGATGAAAGTTCTTTCATA TTTCAATTAAGTGGTATTTCAACACTATTGATTCTTTGAAGACCCTGCCTCATAGGAGGTATAGTAGGTGAAGCTCTTGT TTTTATAACTGGCAAATTCTGCAACTTGTTTCTTATTGTAAATAGCTTCCCTCTGTTTACGGATATGGATAATGTAGGAT GTTTGTTCTTGTAATTGTGAATTTATTTTACATATTTTTTAGCGAATGGGGTGATAATTTTGAAAGAGGAAAAACATCAC CCTTGAGAGTTTGGTCTTGTTCCTGAAAATTCTACAACTGCATATATACTTGTACTTAATTACTTCTTACAGGAGCATTG TAACTAAATGCATTGCTGTGTCTTGACAGGTTGCTGGAAGATGGGGGCTGGTGGCCGAACCTCTGTTCCTCAACCCAACA GGAAGTCAGAGACTGACGCTGTGAAGCGGGTGCCGTTTGAAAAACCTCCTTTCAGCCTCAGCCAGGTGAAGAAGGCCATT CCACCTCACTGTTTTAAGCGCTCCATTCTCCGTTCATTCTCTTATGTTGTCTATGACCTCACAATAGCCTTTTTCCTCTA CTATGTTGCCACCCATTATTTCCACCTCCTTCCTCGCCCTCTTGCTTTCCTAGCCTGGCCAACTTACTGGGCCATCCAAG GTTGCATCCTCACCGGAGTTTGGGTCATTGCACATGAGTGTGGCCACCATGCATTCAGTGACTATCAATGGCTTGATGAC ACTGTTGGCCTCATTCTCCACTCCTCTCTCCTTGTCCCTTACTTTTCATGGAAATACAGCCATCGCCGCCACCATTCCAA TACTGGTTCCCTTGACCGGGATGAAGTCTTTGTGCCCAAGCAGAAATCTTCTATAGGGTGGTACTCCAAATACCTCAACA ACCCACTTGGCAGATTCCTCACAATCACTATCACCCTCACTCTAGGCTGGCCCTTGTACTTGACTTTCAATGTTTCAGGC AGGCCTTATGAAAGGTTTGCTTGCCACTTTGACCCATATGGCCCCATTTACTCCGATCGTGAACGCCTTCAAATTTATAT CTCAGATGTAGGAGTACTTGCAGTGTGCTTTGGGCTTTACCATCTTGCTGTGGCGAAAGGGCTTGCCTGGGTTGTGTGTG TTTATGGAGTTCCACTGCTAGTGGTCAATGGATTCTTGGTCCTGATCACATACTTGCAGCACACTCACCCTGCATTGCCG CACTATGATTCCTCCGAGTGGGACTGGTTCAGAGGAGCTTTGGCAACAGTGGACAGGGATTATGGCATCCTGAACAAGGT CTTCCATAACATTACAGACACTCATATAGCACATCACTTGTTCTCCACAATGCCACATTATCATGCAATGGAGGCTACAA AGGCAATAAAGCCAATTCTGGGAGAGTATTATCGGTTTGATTCAACTCCATTTTACAAGGCAATATGGAGAGAGGCAACA GAGTGTGTTTATGTTGAGCCAGATCAAGGTACTGAGACCAAAGGTGTATTCTGGTACAACAAAAAGTTGGAATGACTGCT GCAGCTTGTTGTCCATTAGGGTGGGAAGGTTTGTTAAACTTTCTTACAACTTAGGATGTTTGGTAAAGGGAAATAATTTT ATTTCAATCCTGATATTTGTACTGGTAATTAGTAGTAAGAGGACAATAGCTTGATTTCAGAATAAGATATGGCATCTCTG AACTGTTAGATTATTGATTTATGGTTTGAAATCAGTGTATGTCGACCTAGTTTCTCCAGGTAGTACCAATGTAATCTATC TGATGGGAACCTTATTCTTGTTCTTTATTACAACTCATTTGGGAATTCCGTGATTGGCTCAATTATGAGTTTTGTTTATC TGTAACTTTCTGTTGTCAACGTCCACTGCTTGGATACCTGCTATAGAAATGAACGGAACTCTTATCAATTGAGTTGATAG AATCATAGAAAGATCATTATGTTACAGTTAATTGGTATTCAAATTAAATGAACTATATCAAATTTGGGTGTTTGGTTCAA TATGATTCATGTTGGTATTAGAGTCGGGGACAGCCAAGGTACATGCTTGCCTTGGGATTGCTCACCGCAGGGCGTCATAT TTAGCCACTTTATTACCTCACTTTTAATCCTAGGTTTAAATTTGCATTCACTTCCAAAAATTTGTTTATGTACTCCGTCT TTTCCTCTCAATGAGACTCAAATTAT
CDS sequence (LotjaGi1g1v0726200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGCTGGTGGCCGAACCTCTGTTCCTCAACCCAACAGGAAGTCAGAGACTGACGCTGTGAAGCGGGTGCCGTTTGA AAAACCTCCTTTCAGCCTCAGCCAGGTGAAGAAGGCCATTCCACCTCACTGTTTTAAGCGCTCCATTCTCCGTTCATTCT CTTATGTTGTCTATGACCTCACAATAGCCTTTTTCCTCTACTATGTTGCCACCCATTATTTCCACCTCCTTCCTCGCCCT CTTGCTTTCCTAGCCTGGCCAACTTACTGGGCCATCCAAGGTTGCATCCTCACCGGAGTTTGGGTCATTGCACATGAGTG TGGCCACCATGCATTCAGTGACTATCAATGGCTTGATGACACTGTTGGCCTCATTCTCCACTCCTCTCTCCTTGTCCCTT ACTTTTCATGGAAATACAGCCATCGCCGCCACCATTCCAATACTGGTTCCCTTGACCGGGATGAAGTCTTTGTGCCCAAG CAGAAATCTTCTATAGGGTGGTACTCCAAATACCTCAACAACCCACTTGGCAGATTCCTCACAATCACTATCACCCTCAC TCTAGGCTGGCCCTTGTACTTGACTTTCAATGTTTCAGGCAGGCCTTATGAAAGGTTTGCTTGCCACTTTGACCCATATG GCCCCATTTACTCCGATCGTGAACGCCTTCAAATTTATATCTCAGATGTAGGAGTACTTGCAGTGTGCTTTGGGCTTTAC CATCTTGCTGTGGCGAAAGGGCTTGCCTGGGTTGTGTGTGTTTATGGAGTTCCACTGCTAGTGGTCAATGGATTCTTGGT CCTGATCACATACTTGCAGCACACTCACCCTGCATTGCCGCACTATGATTCCTCCGAGTGGGACTGGTTCAGAGGAGCTT TGGCAACAGTGGACAGGGATTATGGCATCCTGAACAAGGTCTTCCATAACATTACAGACACTCATATAGCACATCACTTG TTCTCCACAATGCCACATTATCATGCAATGGAGGCTACAAAGGCAATAAAGCCAATTCTGGGAGAGTATTATCGGTTTGA TTCAACTCCATTTTACAAGGCAATATGGAGAGAGGCAACAGAGTGTGTTTATGTTGAGCCAGATCAAGGTACTGAGACCA AAGGTGTATTCTGGTACAACAAAAAGTTGGAATGA
Protein sequence (LotjaGi1g1v0726200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGAGGRTSVPQPNRKSETDAVKRVPFEKPPFSLSQVKKAIPPHCFKRSILRSFSYVVYDLTIAFFLYYVATHYFHLLPRP LAFLAWPTYWAIQGCILTGVWVIAHECGHHAFSDYQWLDDTVGLILHSSLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPK QKSSIGWYSKYLNNPLGRFLTITITLTLGWPLYLTFNVSGRPYERFACHFDPYGPIYSDRERLQIYISDVGVLAVCFGLY HLAVAKGLAWVVCVYGVPLLVVNGFLVLITYLQHTHPALPHYDSSEWDWFRGALATVDRDYGILNKVFHNITDTHIAHHL FSTMPHYHAMEATKAIKPILGEYYRFDSTPFYKAIWREATECVYVEPDQGTETKGVFWYNKKLE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 54 | 54 | - | – | |
| PANTHER | 1 | 382 | 382 | 2.6E-219 | – | |
| PANTHER | 1 | 382 | 382 | 2.6E-219 | – | |
| Pfam | 26 | 65 | 40 | 5.1E-8 | ||
| CDD | 47 | 329 | 283 | 4.62946E-79 | – | |
| TMHMM | 55 | 77 | 23 | - | – | |
| Phobius | 55 | 74 | 20 | - | – | |
| Phobius | 75 | 85 | 11 | - | – | |
| TMHMM | 82 | 104 | 23 | - | – | |
| Pfam | 85 | 345 | 261 | 3.6E-33 | ||
| Phobius | 86 | 105 | 20 | - | – | |
| Phobius | 106 | 116 | 11 | - | – | |
| Phobius | 117 | 137 | 21 | - | – | |
| Phobius | 138 | 175 | 38 | - | – | |
| Phobius | 176 | 196 | 21 | - | – | |
| TMHMM | 176 | 198 | 23 | - | – | |
| Phobius | 197 | 222 | 26 | - | – | |
| Phobius | 223 | 242 | 20 | - | – | |
| TMHMM | 223 | 245 | 23 | - | – | |
| Phobius | 243 | 247 | 5 | - | – | |
| Phobius | 248 | 272 | 25 | - | – | |
| TMHMM | 250 | 272 | 23 | - | – | |
| Phobius | 273 | 384 | 112 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Lipid metabolic process | The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. | ||
| Molecular function | Oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced to two molecules of water. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi1g1v0726200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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