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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0727100 |
| Transcript ID | LotjaGi1g1v0727100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT3G58030.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q8GUK7|RMA3_ARATH E3 ubiquitin-protein ligase RMA3; TrEMBL-Plants: tr|I3SAZ4|I3SAZ4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0727100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:129846404..129850455) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAGTAAAAACACATTTAGGTACCCTAAAGACTAATACAAAGTCTTAGTCTTATTTAAATTGATAATCACCCGATGAC ACCCATGAACGTTCCTGATAGCGCCGTGTTGGAACAGAAACCACTCATGGCTCACAAATGATCTCAGCCGTCAATCTCCA TCAGAGCAACGACGCCGCATTCCTCAGACCAGGTGCGTGCTTCTTCCTTAATCCCTCTCTCTCTCTTTCGATTCTGCGTT TTGTTCTCTAACTCTAAACCCTTTCTCTCTTCCTCACAGATCGACAACGATAATGGTCGAACCCACATAGCAACCTTAAC CAGCTCCAAGGTTTTCCCATCTTCTCAATTCTTCTTCCTTGTAATTTTCACGATTACAAATCTTTTTTTTTTTTTTGCGA AATCCTTGTTGGTGAAAACTTGAACCTTCAATCGAGGTCGTTTCTCATGAATCGCTTCAATTAGAGTTGAATTCTAGTAA TTCACCGCGTGTTCTTGTTGTATTATGCTTAATCTGGATCTGGGTCGGGTCGTTCATCTTTGAGATGAAATTAGGGTTTA TTTCCCCCAAATTTTAGCTATTTTCATTTCTGATTCTTCAGTTTTATCAATTAACATGTTTTTCTCGAACGAATCCCCTC CGTCTAACATGGGTTTCTTCGATTTGTATTAAAGATTATATTTTTCGGGAAAAAAAATCCTCTTTTTTTTCATTTGCCCC TTTTTTATTGTTTTTTTTTCTGTGGAATTTTTGTAATAAAGCAAGCTTCTTTCTAGCTTGGACATTCAAGCTGTGATGGG GGAAGAGAATTCTGATGCTATGAACCTAGATTTGAATCTGAGTCCAGGTCCTGAGCCAGCAACCAATGAAGCTATGAACT TGGATGCTTGGGTTGAGGAGCCAATTCATAGAATCAGTGAAGCTGTGAGGCTCAGGGCTCGGCAGAGATGGAGATGGCGG CAGCATCTTCATATCCCTCCACCTGAAGTTCATTTTCACATTCCACCTGAGGCAGTTCATGTTCATCTTCCTATCCCTCA TCTTCCTATCCCTCCTGAAGCGCACAATATCTCCATGGAATTGAACAATTTTTTGGTGAATTCTGGTCATGGAGGCGCAT TGCAGACTGGGGAAGGAAGTGTGGCGGCTGAGGGGAGACTGGAGGAGGTGCCGAAAGCGTGTGAGAATATCAATGGTGTC TCGGTTGATGAAACATCGCAGAAGAAGGATGATGTTGAAAGGGGTAGTGGGAATGATGGGGATTTTTTTGACTGTAATAT CTGCTTGGACCTGGCCAGGGAACCTGTTGTGACTTGTTGTGGCCATTTGTTTTGTTGGACATGTGTGTATCGATGGCTGC ATCTGCATTCGGATGCGAAGGAGTGTCCAGTTTGCAAGGGAGAGGTGACGCTTAAGAGTGTAACACCAATATATGGCCGT GGAAACAATGGTCGTAGCAGTGAGGAGGATTCCACTCTTAAAATCCCTCCTAGGCCTCAGGCAAGGCGTGTTGAAAGTCT AAGGCAAACCATTCAGAGAAATGCATTTGCACTCCCTGTGGAAGAGATGATTCGGCGTCTTGGAAGCAGAATAGATCTTA CTCGGGATTTAGTTCAGCCAAATGAACCGGACAATGCTCGTGAGCAAGCTGAGAGAACCACTTCTTTGCTGAGTAGGTTC TTGACATCTCGAGGTATGCGGAGAGAGCAGAATCCTGTGGCACCCCAACCCCAAGATGATGTAGTTGGTTTGCCACAGAA CAATGTTGGTAATGCTGCTGAGGTAGGGGATAACCGCAGGGTGCAATCCCTATTGCTTCGAAGGACTCAATCACATAGAG CAACACTTACTACTCTTTCATCAGCACTGACTTCTGCTGAAAGATTATTTGAAGCATATCTCCGTAGCAATCCATTAAAT AGAAACCAAGAACAGCCTCCTCCTGTTGAGGACAGAGATTCCTTTTCAAGCATTGGTGCTGTCATAAATTCTGAGAGTCA AGTGGACACTGCTGCAGAAATTGATTCCATGGTATCCTTATCAACATCCTCCTCTAGGAGGAGAAATGATGCTTCCAGAG TGTCTGATGTGGATAGTGGAGATTCTCGTCCTCCAAGGCGCCGGCGTCTGAACTGATTGCAGTCTTATAGATCAAGTTAT TACTATTCTGTCATGTAATCATGTCATAATAATTTCCCAACACCTATGTAAGTGCTTCTAGCTTTGATATGTTATGGCCT TATATGTATGAAGTTTTGGCAGATTAGAGATGATTTCAAAGTGCTTTTACTTACAGTATTGCAAGTGCCCGTCCCTAAAG GATTGAGTTATTTTAAGTCTTGTCATTGAGAAGAAAAAATTTGCTATAGAATAACCATGTTACTTTTAGTTTATAGAACT TATAACTTATTACCCATGTGCCTGTTTTATCCGATTGTATATTTGTATTACTCTACCTAATTGATTAAGCCTTATAGTCA AGGATGCAATTTATCTGCTAATTGAGGTAAGGTTGCATGATCTGACAGTTAGTACCCCACAATGACCGGAGCTTCTGTTT AATTTGTGTTGTAATTGAGCAATCATAAAGTCTTCATTTTATTCTTATTGTTATGTTATTATTCAAGCATGATCATAAGA CAATTAACATAATCTTTGCTGGCATTGTTTTTGTAAGACTGATATAATGGTTGTATCTTTGTTCCAGCTGAAATGAGTTT TTGTAAAACAGATAAATACTGAAGTTCATTGAAAGTGAGACTATCTAGTTCTCTCACCTTGTTTTGTTTGTCTTGTCTGG TCTCACCTTGTTTGCTGATGTGTTGGGATTTTTCTTGGTCTCCCACTCTAAATTCAATATAACAAGTAAAACACTTTTAA GGGCATTTATATTGGAATGAGACTATCTACAATTGACTCAAATTAAAGTGCATCACAATTTTAAGCTCGACAATTGAAGG GTAGATAGATATATTCTTACTTGCATAATACAAAAACAAAGTCACTTTAATGGAGCTTTTTCCTTGCTATTAAATCTCCT TACTACATACCTCAAAATCTTCATGTCATGCATTCTTAAATGCAGAATCCTAGTGAAAAATGGGCATATTAATGATGAAT CAATTTTTCCAGAACTAAACATCTTTATGGCACTATTATAATTTGTTTTCTTGGATCTAGCTTTGAAATTTTTAATCTTA TTTAGTTTTTAAAATTTCCCTTTATTATTTATATTATGATATCTGAAAATTAGTAATGCGTCTCCCCTTGTATATTAGGT TTTTATCCAAAAAAATTATTGATTTCATGATATGCTTTTCCTTTCTCTGAAAATAGGCTTACATTATGTGATTATGATAT TCAAAAGGCTTACATTATCTGCTTTAACTTTTGATACAATTTTGAAAGAGCTTAGAAATAGTTTATCTCAACACAACCTT TCTCTGATATTCAAAAGAAAGCAGACTTACATTATCTGCATCAATAATTTTCCTGATTGTGGCTTAATCGACCATAACAT ATTCCTTCATGGTTGTTTAAACCTGTTGTATAATCAAACCAAAACCAGGGCAGGGCACATGTATTATTACTCCTTATTCT GTGTTGATTGTGCTTCTTAATGTAGATTGAAATGAGATGTATAGTAATTGATCCTTGTTTGTTAAAATTAAAATTTACAT GAAACTTGGTTGACAGACGTAACAAACCAAAAGATTACATGGAATGGAAGGCACAAGCTGAGACTGATTATGGATATTAA GGGAAAATATTAGCTAATGCCATAATGTGACAGATTGGAGAAGAAATGCTAAATCATGACAGAATGACTTACGCTTACCA CTGTTGTCCTTATAAAGGTGCTAAATCAGATTAGCATATTTTTTAATATAAAACCATTCAGGTAGCTTAGTGTGTGTTTG GTTTTTAGTTCACACATGTTCCAAGATAGTTTCAACTGAAAAACACGAATTTCAATGTGCGAATGTGAAAGTAACTCTTA GGTTCTGTTGGGTTGAAAGTGCTTTTAAGTTGATCTCAACTAAAATCCAAAT
CDS sequence (LotjaGi1g1v0727100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGAAGAGAATTCTGATGCTATGAACCTAGATTTGAATCTGAGTCCAGGTCCTGAGCCAGCAACCAATGAAGCTAT GAACTTGGATGCTTGGGTTGAGGAGCCAATTCATAGAATCAGTGAAGCTGTGAGGCTCAGGGCTCGGCAGAGATGGAGAT GGCGGCAGCATCTTCATATCCCTCCACCTGAAGTTCATTTTCACATTCCACCTGAGGCAGTTCATGTTCATCTTCCTATC CCTCATCTTCCTATCCCTCCTGAAGCGCACAATATCTCCATGGAATTGAACAATTTTTTGGTGAATTCTGGTCATGGAGG CGCATTGCAGACTGGGGAAGGAAGTGTGGCGGCTGAGGGGAGACTGGAGGAGGTGCCGAAAGCGTGTGAGAATATCAATG GTGTCTCGGTTGATGAAACATCGCAGAAGAAGGATGATGTTGAAAGGGGTAGTGGGAATGATGGGGATTTTTTTGACTGT AATATCTGCTTGGACCTGGCCAGGGAACCTGTTGTGACTTGTTGTGGCCATTTGTTTTGTTGGACATGTGTGTATCGATG GCTGCATCTGCATTCGGATGCGAAGGAGTGTCCAGTTTGCAAGGGAGAGGTGACGCTTAAGAGTGTAACACCAATATATG GCCGTGGAAACAATGGTCGTAGCAGTGAGGAGGATTCCACTCTTAAAATCCCTCCTAGGCCTCAGGCAAGGCGTGTTGAA AGTCTAAGGCAAACCATTCAGAGAAATGCATTTGCACTCCCTGTGGAAGAGATGATTCGGCGTCTTGGAAGCAGAATAGA TCTTACTCGGGATTTAGTTCAGCCAAATGAACCGGACAATGCTCGTGAGCAAGCTGAGAGAACCACTTCTTTGCTGAGTA GGTTCTTGACATCTCGAGGTATGCGGAGAGAGCAGAATCCTGTGGCACCCCAACCCCAAGATGATGTAGTTGGTTTGCCA CAGAACAATGTTGGTAATGCTGCTGAGGTAGGGGATAACCGCAGGGTGCAATCCCTATTGCTTCGAAGGACTCAATCACA TAGAGCAACACTTACTACTCTTTCATCAGCACTGACTTCTGCTGAAAGATTATTTGAAGCATATCTCCGTAGCAATCCAT TAAATAGAAACCAAGAACAGCCTCCTCCTGTTGAGGACAGAGATTCCTTTTCAAGCATTGGTGCTGTCATAAATTCTGAG AGTCAAGTGGACACTGCTGCAGAAATTGATTCCATGGTATCCTTATCAACATCCTCCTCTAGGAGGAGAAATGATGCTTC CAGAGTGTCTGATGTGGATAGTGGAGATTCTCGTCCTCCAAGGCGCCGGCGTCTGAACTGA
Protein sequence (LotjaGi1g1v0727100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGEENSDAMNLDLNLSPGPEPATNEAMNLDAWVEEPIHRISEAVRLRARQRWRWRQHLHIPPPEVHFHIPPEAVHVHLPI PHLPIPPEAHNISMELNNFLVNSGHGGALQTGEGSVAAEGRLEEVPKACENINGVSVDETSQKKDDVERGSGNDGDFFDC NICLDLAREPVVTCCGHLFCWTCVYRWLHLHSDAKECPVCKGEVTLKSVTPIYGRGNNGRSSEEDSTLKIPPRPQARRVE SLRQTIQRNAFALPVEEMIRRLGSRIDLTRDLVQPNEPDNAREQAERTTSLLSRFLTSRGMRREQNPVAPQPQDDVVGLP QNNVGNAAEVGDNRRVQSLLLRRTQSHRATLTTLSSALTSAERLFEAYLRSNPLNRNQEQPPPVEDRDSFSSIGAVINSE SQVDTAAEIDSMVSLSTSSSRRRNDASRVSDVDSGDSRPPRRRRLN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 20 | 20 | - | – | |
| PANTHER | 12 | 446 | 435 | 1.9E-171 | – | |
| PANTHER | 12 | 446 | 435 | 1.9E-171 | – | |
| Gene3D | 138 | 226 | 89 | 4.3E-18 | ||
| SUPERFAMILY | 155 | 213 | 59 | 4.57E-17 | – | |
| CDD | 158 | 202 | 45 | 1.48744E-29 | – | |
| Pfam | 159 | 205 | 47 | 7.0E-8 | – | |
| SMART | 160 | 200 | 41 | 2.7E-8 | ||
| ProSiteProfiles | 160 | 201 | 42 | 13.537 | ||
| ProSitePatterns | 175 | 184 | 10 | - | ||
| MobiDBLite | 215 | 235 | 21 | - | – | |
| MobiDBLite | 404 | 446 | 43 | - | – | |
| MobiDBLite | 404 | 423 | 20 | - | – | |
| MobiDBLite | 424 | 446 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0727100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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