Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0727400 |
| Transcript ID | LotjaGi1g1v0727400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ARM repeat protein interacting WITH ABF2 protein; TAIR: AT5G19330.1 ARM repeat protein interacting with ABF2; Swiss-Prot: sp|B9DHT4|ARIA_ARATH ARM REPEAT PROTEIN INTERACTING WITH ABF2; TrEMBL-Plants: tr|A0A072U240|A0A072U240_MEDTR ARM repeat protein interacting WITH ABF2 protein; Found in the gene: LotjaGi1g1v0727400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:129915166..129920511) extracted from Lotus japonicus Gifu genome v1.2.
TTGGTGGCAAATAAACGTTTTTGAGACAGTGAAAAAGTGTATCGGTCGGGGAAAAAATGGGCGGAATTTGGAGGTAAACA AAAGTGTATTTGAAAAAAACTGGCGGACCACTTGAAATTTTGCCGCTTATAAAATCATTTCCCTCTCTCAACCCACACTC CTTCCCTCCGTCTTCCGAATCCACACACACAACCCCATACTCTACTACCTTTGTCCGATCACCATGGATTGCGCCGCCGC AGTTCAAAACTTGAAGCGCAAACGATACCTGATCGGCGATGAAGATCGGAATACACTGTTTGACGATTCTAAACGAGATC AATCCATCAAGATTCGCCATCAGGTTTATCATCTCAATTCCGTCGTTTCGCCGTCTTTGAAACTCGCAGATCTTGTATCC GCATTGACTGCCCTCCACGCTCTTTCTGAGTATGCTAAAGACGGTACTGTATCTGCTCCACTCTCTCGCTTTTGTTTTAA TTTTGGCTGGACTTTTTCAATTTACACAATTTGTTTGGCATGCAGAGGAGCTCGTGGATAGTTTAGTGAATTCTGGAGTT GTGCCTATTATTATGAGGTTTCTTCTTGATCTGAGAGATGGAAATGACAGCGGCGAAGTTGTCACGGTTACCCTCAAGTA TGAGTTGCAGAGAGGATGTGTTTTGGTCCTCTCCCTTCTCGCAGTTAAAGTAATTGATTTATCCCTTTTCCTCTCATTTT TAGGGTTAATTGTTATTGATATTGTCTTGTTGATGAGGTTGTCTATTGTGTTCTAATTCCACAGTAAATAAGTGAAATTC AAGTCTTACCTGATCAATTTCAAATGTTTAAACTAGGTTTTATATGCCCTCGATCAGTGCAACGGGATGTGTCTATTTAT CTCTTGACTCGAAATGGGAGTAGGTTTGAAAAAGGATCTTAGAGTGTCTAGGGTTGGGTCATTGTTAGTGAAAATAATTT TCCATAATCACTTGTTGATTATTCTAAAAGTTTAGTTTTTAGTTGATAACAATTGAATTATAAGGATGATTAATTTGGTT TTTTGTCTTTGTCTTTTTCGTGCTGAGTGTGGATCATGTAAGGTTCCTGAAAATGCATTGAGTAGTGCAGTGCTTGTCAA TATTGTTTAGAATATGGGTGTATTGGATTTAATTGCACCAATCATAATATGTATATGTAGTGCCACTGTTGAATATGCAT ATCATTTGATCTTATCGAATTGTGTAGCATCGTGGCCATTGTTTTGAGGAAGATTATTTTATGGTTGAGTACCCATGTCA CTTTTTATTGATTTCAGATTTTTGTACATCATGAATTTGTATTAATTTTTTACTTTATTTCTGCTTATCTTTATCTTCAA ACAGCCAGAGTATCAACAACTCATTGTTGATGCTGGAGTCTTGTCATATCTTGTTGATTTCTTAAGGTTGCACAAGACTG GTCTCATGTCTCAAGAACTTGTTGGTCTTCTTAAGAAAGCAGCAGATGCAATAACCAATCTTGCTCATGAAAACACCAAC ATTAAGAACCATCTCAGGTTGTCCATTATTTCCATATGTTATAGATATATGGTGCAAATATTTTATTCTCTTCTCTTACA TGGATATGGTTTGCTTAGGAATGAGGGTGGTATTCCTCCTCTTGTTGAATTGCTTGAATTCAATGATTCAAAAGTACAAA GGGCGGCAGCAGGAGCCTTGAGAACTCTTGCATTTAAAAACGATGACAACAAAAATCAGGTAATTTACTTTGCAATGCAA ATTTTGCTGGATTCTTTTGTTATAGCTGTTTAAATGAATGGATTTCTTTTGCAGATTATTGGATGCAATGCATTGCCCAC TCTTGTACTAATGCTTCAATCAGAGGACCCTACAATTCATTTTGAGGCGGTCAGTCACTAACATGAATTTGTCAATTTAC ATAATCCCCTATATTTAATTTTGTTGGTTTCGTAATTATAAGATTTTAGCACTAGCTAAATTGGTGTTTTTTGCAGGTTG GTGTAATTGGAAATCTGGTCCACTCTTCACCGAATATTAAGGAAGTTGTTCTTGAAGCTGGTGCTTTACAACCTGTGATT TTGTTATTGAGGTAATGTTGATCATAGAAATTTGCTTTCTCAATATGTAATACATAGCAAAATGATGTGTTTATCAAACA GTTAGTTGCTTTCTGTAAGTGAGCAATACCTTTCATCCCTAATTAATCTTTGTATTCATGACTTTCATGATAGTTCCTCC TGTTCGGAGAGCCAAAGAGAAGCAGCTCTTTTAATTGGTCAATTTGCTGGATCAGACGAGTCAGATTCAAAGGTGGATCA AGTTTTTAGCTTCTACAAAATACTAAAAGTCTATCACTTGTAGGAGAATTTTCTTATTAATTTTTATAACTTGTGGTTCA TGCAGGCTCACATTGCCCAAAGAGGGGCTATAAGACCTTTGGTTGACTTGCTTATGTCGCCAGATGAAAACCTTAGAGAA ATGTCTACTTTTGCTCTTGGGAGGTTAGCACAGGTGATTATTTCTAACAATAAATATTTGGTCTCATGTCTGTTTATGTG AATATAAAATTGATGATTACAGATTGTAGTTTTGATGATCATAATCGTGATTGATCAGCTTGATATAGGATTGTCCAATG ATCTTCTATTTAAATTTATATGTGATGAGTCTTAATGGTACAAAGAAACTCTTTGTAGACATTGCCTGATATTGTCACTA CATTAAACAAGGACATATTAAAGACATTCTTTGGAGTTTAGATATTATATGCTTCTAATTTAACTTATTGATCCACACAA CTTTGCCTATGGTAGCCATAGCCTACCTAAGAACCTCCAATGCTACTTTGGGTAACTTTTTGGTTGTATGTGGGAATTGC TTTCTTTAACATATCTCTTATTGCTTATACATTCAAATTTTAGGACTCGCATAATCAAGCTGGTATCGCTTATAACGGAG GTATAAAGCCTCTGCTCAATCTTCTTGAATCAAAGAATGGGTACATCCAACACCATGCAGCATATGCTCTCTATGGTCTT GCTGACAATGAGGTGAAGTCAGTTTCCTTGATCTTTGCTTGGTCAAAACCATAGTGATATGCAGCCACTGATATTATATC ATTGTAATACAGGACAATGTTGCAGATATTATTAAGGCTGGTGGTTTTCAAAAACTTCTGGATGGACATTTTGAAGCTCA AGTATGCTCATTTAGTCTTCTTTGTAGCATAGTAATATTGCATTTGATTTACCGGTATTTCTTCTTAATGATACTTTATT ATTATTAATTCAGTTTTTGTTATCATTGTGGTTTGACTCACAGCCTACTAAAGAGTGTGTAGCCAAAACAAAAAAAAGAT TGGAGGAGAAGATGCATGGCCGAGTGAGTTCTCCAGCAAATTATTCATTTTCTATGGCCAGTGCTTGATTTTAGTCAAAT ATTAGATTTGTAACCTGTGTTGATACATATTTTTTGCATTATCTAATATGATTATTGTGTTGATTCCTCTTTGGCAGGTA CTCAAACATGTATTATATCTTATGCGCTTTGCAGACAAAGGTGTTCAAAGACATGTAGCTATTGCACTTGCTCATTTATG TTCCCCTGATGATCATAAAACTATTTTTGTTGACAATAATGGTAATAAATTTAATTTGACATATTTTGTTATTCTCACTC AATATTTAGAAACAAATTTCATTCATTATGCTGATAAATCTTCAGGACTAGAATTGCTGCTAGTTCTTCTTGAATCTTCA AACCTAAAGCAAAAGCGTGATGCTTCAGCAGCGCTTCACAAGTTGGCTTCCAAAGCCACATCTGTCTCTCTTGCTGATGC TGCTCCTCCATCATCACCATCTCCCCAGGTATTTTATTATCATGTGCTAAAGCACTTGTTCTGCGTTATCATAATTGCAT CACTCTTTTGAAACTAAGCTTCTAATATTCTGTTGTTAATGTTATAGGGATGGAAATGTAAAAAAAAGATATAGTTGTTT TTCACATTTCCTGTTAATTATTTTTGGTTGCATATTTTGTAGGTGTACTTGGGTGAACAATATGTGAATAATCCACAACT TTCTGATGTCACATTCTTAGTTGAAGGTGGAGACTCATTGCTTTCTATTATTTTGTTTTTATGGATATTGATTTAGATAT TTGGTCTAATTTACTAAGTTTTCCTTTCTTCAGGTAAGAGGTTTTATGCTCATAAAGTTTGTTTACTGGCTTCCTCTGAT CCATTCCGCGCGATGTTTGATGGGGGTTATAGGGTAAGTTTTAATTAATCTTGCAACTATGTTTTGAGCCTCATTTTCTT ATTATCTTTCATTCTGATGTGGCTGTGATGGTTGGTTCTTCACTTTGCAATTGAAATAAGAGTGATGGATCCATAATAAT GTCTTAAAATGTGTATTGCAGGAAAGTGAAGCCAAAGATATAGAGATTCCAAATATTAAATGGAATGTCTTTGAGTTGAT GATGAGGTATTGTGGTGCAATATCTACTATTCCTTTTCTATAACTTTTTTAATCCTTTTTCATAATTGGCCTCTATGTAT GACTTGATTTTCTGTTGGACTTCAGATTTATTTACACTGGAACAGTAGAGGTCAAATTGGATATTGTTGAGGACCTCCTC AGAGCTGCAGATCAATATCTTCTGGATGGTCTTAAGTGTCTTTGTGAAAAAGCTATTTCTCAGGTACCAAGAATTGAGTT TCACAGTTGTGTCTATGCTTGCGGAACTTTATAATTTGATCTAAATCCGGTGATTCTTGAAATTACTCTTATAGGTTATT TCTGTGGAAAATGTTACCATAATGTATGGTATGTCAGAGGTATATAATGCTACATCACTAAGAAATTCTTGCATTCTGTT TGTCCTGGAGCAATTTGATAAGCTTAGTGCCAAACCATGGTATGTACATTCTAAAACATAAAACAATACTTTCATAGTTC ACTGAGTTTTATTTTATCAATAATTTTTCCCTCTATTTGTTCAATATGCAGGTCTTCTCGCTTTCTTAGTTGCATTGCAC CCGAGATACGCGATTTTTTCTCAGCTTTACTTACCAAGCCATGTTCAACTGATTCTTGAGGATCTGTAGATTTTTAAACA TTAAATGAGGAAAGGTGAAAATGTATAAAGCTGTAAATGCCTTTCCTTGATATAGAAATGCAAATCATTTTTTGTTAAAC AAGCTTCTATAGTGGGGAAAGAGTCATTCCATTGTGACATTTATAAGACTAAAGATTGTGATATTTTGATATCAAGACCG GAGTGTCATTTTGTCCAAGTATAACTTAATTATTTTACATATCTGATTTGGGCTTTTTTTTGCAAG
CDS sequence (LotjaGi1g1v0727400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTGCGCCGCCGCAGTTCAAAACTTGAAGCGCAAACGATACCTGATCGGCGATGAAGATCGGAATACACTGTTTGA CGATTCTAAACGAGATCAATCCATCAAGATTCGCCATCAGGTTTATCATCTCAATTCCGTCGTTTCGCCGTCTTTGAAAC TCGCAGATCTTGTATCCGCATTGACTGCCCTCCACGCTCTTTCTGAGTATGCTAAAGACGAGGAGCTCGTGGATAGTTTA GTGAATTCTGGAGTTGTGCCTATTATTATGAGGTTTCTTCTTGATCTGAGAGATGGAAATGACAGCGGCGAAGTTGTCAC GGTTACCCTCAAGTATGAGTTGCAGAGAGGATGTGTTTTGGTCCTCTCCCTTCTCGCAGTTAAACCAGAGTATCAACAAC TCATTGTTGATGCTGGAGTCTTGTCATATCTTGTTGATTTCTTAAGGTTGCACAAGACTGGTCTCATGTCTCAAGAACTT GTTGGTCTTCTTAAGAAAGCAGCAGATGCAATAACCAATCTTGCTCATGAAAACACCAACATTAAGAACCATCTCAGGAA TGAGGGTGGTATTCCTCCTCTTGTTGAATTGCTTGAATTCAATGATTCAAAAGTACAAAGGGCGGCAGCAGGAGCCTTGA GAACTCTTGCATTTAAAAACGATGACAACAAAAATCAGATTATTGGATGCAATGCATTGCCCACTCTTGTACTAATGCTT CAATCAGAGGACCCTACAATTCATTTTGAGGCGGTTGGTGTAATTGGAAATCTGGTCCACTCTTCACCGAATATTAAGGA AGTTGTTCTTGAAGCTGGTGCTTTACAACCTGTGATTTTGTTATTGAGTTCCTCCTGTTCGGAGAGCCAAAGAGAAGCAG CTCTTTTAATTGGTCAATTTGCTGGATCAGACGAGTCAGATTCAAAGGCTCACATTGCCCAAAGAGGGGCTATAAGACCT TTGGTTGACTTGCTTATGTCGCCAGATGAAAACCTTAGAGAAATGTCTACTTTTGCTCTTGGGAGGTTAGCACAGGACTC GCATAATCAAGCTGGTATCGCTTATAACGGAGGTATAAAGCCTCTGCTCAATCTTCTTGAATCAAAGAATGGGTACATCC AACACCATGCAGCATATGCTCTCTATGGTCTTGCTGACAATGAGGACAATGTTGCAGATATTATTAAGGCTGGTGGTTTT CAAAAACTTCTGGATGGACATTTTGAAGCTCAACCTACTAAAGAGTGTGTAGCCAAAACAAAAAAAAGATTGGAGGAGAA GATGCATGGCCGAGTACTCAAACATGTATTATATCTTATGCGCTTTGCAGACAAAGGTGTTCAAAGACATGTAGCTATTG CACTTGCTCATTTATGTTCCCCTGATGATCATAAAACTATTTTTGTTGACAATAATGGACTAGAATTGCTGCTAGTTCTT CTTGAATCTTCAAACCTAAAGCAAAAGCGTGATGCTTCAGCAGCGCTTCACAAGTTGGCTTCCAAAGCCACATCTGTCTC TCTTGCTGATGCTGCTCCTCCATCATCACCATCTCCCCAGGTGTACTTGGGTGAACAATATGTGAATAATCCACAACTTT CTGATGTCACATTCTTAGTTGAAGGTAAGAGGTTTTATGCTCATAAAGTTTGTTTACTGGCTTCCTCTGATCCATTCCGC GCGATGTTTGATGGGGGTTATAGGGAAAGTGAAGCCAAAGATATAGAGATTCCAAATATTAAATGGAATGTCTTTGAGTT GATGATGAGATTTATTTACACTGGAACAGTAGAGGTCAAATTGGATATTGTTGAGGACCTCCTCAGAGCTGCAGATCAAT ATCTTCTGGATGGTCTTAAGTGTCTTTGTGAAAAAGCTATTTCTCAGGTTATTTCTGTGGAAAATGTTACCATAATGTAT GGTATGTCAGAGGTATATAATGCTACATCACTAAGAAATTCTTGCATTCTGTTTGTCCTGGAGCAATTTGATAAGCTTAG TGCCAAACCATGGTCTTCTCGCTTTCTTAGTTGCATTGCACCCGAGATACGCGATTTTTTCTCAGCTTTACTTACCAAGC CATGTTCAACTGATTCTTGA
Protein sequence (LotjaGi1g1v0727400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDCAAAVQNLKRKRYLIGDEDRNTLFDDSKRDQSIKIRHQVYHLNSVVSPSLKLADLVSALTALHALSEYAKDEELVDSL VNSGVVPIIMRFLLDLRDGNDSGEVVTVTLKYELQRGCVLVLSLLAVKPEYQQLIVDAGVLSYLVDFLRLHKTGLMSQEL VGLLKKAADAITNLAHENTNIKNHLRNEGGIPPLVELLEFNDSKVQRAAAGALRTLAFKNDDNKNQIIGCNALPTLVLML QSEDPTIHFEAVGVIGNLVHSSPNIKEVVLEAGALQPVILLLSSSCSESQREAALLIGQFAGSDESDSKAHIAQRGAIRP LVDLLMSPDENLREMSTFALGRLAQDSHNQAGIAYNGGIKPLLNLLESKNGYIQHHAAYALYGLADNEDNVADIIKAGGF QKLLDGHFEAQPTKECVAKTKKRLEEKMHGRVLKHVLYLMRFADKGVQRHVAIALAHLCSPDDHKTIFVDNNGLELLLVL LESSNLKQKRDASAALHKLASKATSVSLADAAPPSSPSPQVYLGEQYVNNPQLSDVTFLVEGKRFYAHKVCLLASSDPFR AMFDGGYRESEAKDIEIPNIKWNVFELMMRFIYTGTVEVKLDIVEDLLRAADQYLLDGLKCLCEKAISQVISVENVTIMY GMSEVYNATSLRNSCILFVLEQFDKLSAKPWSSRFLSCIAPEIRDFFSALLTKPCSTDS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 24 | 694 | 671 | 0.0 | – | |
| PANTHER | 24 | 694 | 671 | 0.0 | – | |
| Gene3D | 49 | 223 | 175 | 1.5E-26 | ||
| SUPERFAMILY | 61 | 149 | 89 | 8.34E-7 | ||
| SMART | 73 | 127 | 55 | 6.6 | ||
| SMART | 128 | 176 | 49 | 0.066 | ||
| SUPERFAMILY | 164 | 502 | 339 | 4.16E-55 | ||
| SMART | 178 | 218 | 41 | 4.2E-8 | ||
| Pfam | 182 | 217 | 36 | 1.0E-7 | ||
| ProSiteProfiles | 189 | 224 | 36 | 13.037 | ||
| Pfam | 220 | 259 | 40 | 3.6E-8 | ||
| SMART | 220 | 260 | 41 | 2.1E-6 | ||
| Gene3D | 224 | 426 | 203 | 2.7E-43 | ||
| ProSiteProfiles | 231 | 273 | 43 | 11.882 | ||
| SMART | 262 | 302 | 41 | 2.1 | ||
| SMART | 305 | 345 | 41 | 0.0066 | ||
| ProSiteProfiles | 316 | 358 | 43 | 11.287 | ||
| SMART | 346 | 386 | 41 | 24.0 | ||
| ProSiteProfiles | 357 | 399 | 43 | 11.882 | ||
| Gene3D | 428 | 512 | 85 | 5.3E-8 | ||
| SMART | 461 | 501 | 41 | 0.38 | ||
| CDD | 521 | 636 | 116 | 1.31195E-67 | – | |
| SUPERFAMILY | 525 | 627 | 103 | 3.53E-30 | ||
| Gene3D | 525 | 669 | 145 | 3.9E-42 | – | |
| Pfam | 526 | 629 | 104 | 8.9E-27 | ||
| ProSiteProfiles | 534 | 601 | 68 | 18.265 | ||
| SMART | 534 | 631 | 98 | 4.7E-24 | ||
| CDD | 631 | 693 | 63 | 1.30264E-22 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0727400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…