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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0733100 |
| Transcript ID | LotjaGi1g1v0733100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT2G22410.1 SLOW GROWTH 1; Swiss-Prot: sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410, mitochondrial; TrEMBL-Plants: tr|A0A0R0KJI4|A0A0R0KJI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0733100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:130492927..130495283) extracted from Lotus japonicus Gifu genome v1.2.
GGGCGAACAGGCACTGCTGATTTATACTTGCTGAGCTCTGATTTCCCTTCTTGTTCATGGAAAATATTTATATCACAGTG ATTATTCAGCTCAAATCCAAGTGATATTCTCTTTCTTGAACTCAGCTCTTGTTGCTGGCATATGAAAAATTTGCTGATCG TTGTTCCTCGCTCACTACGCGGAACCCCTAAGCAACCCAAATCACTGCATCATCTCCAACAGCGTCAACCACTGTCCTCT GCATCCAAATGGAACTCCACAACCAACGTCGTAATCACCAACCCAATCCTCGTGATCATGGAATCATGTTCCACCATGCG GCAACTGAAGCAGATTCATGCCCGCATGACCCGGACCGGTCTCATCACCCACACGTTCCCGGCGAGCAGGCTCCTCGCCT TCTGCGCGCTCGCCGATGCCGGAGACATTCGCTACGCCCACCTTCTCTTCCACCGCGTCATCGACGAGCCCAACACTTTC ATGTGGAACACCATGATCAGAGGATATCGGAAAGCCAGGAACCCCAACATTGCCTTCTCCTACTTCCTCCGAATGCTGCG GCACCGCGTTGAAATGGACTGCAGAAGCTTCGTTTTCGCGCTAAAGGCGTGTGAGGAGCTATCTGGGGATTTTGAGGGGG AATCAGTGCATTGCGTTGTGAGGAAACTGGGGTTTGATTCGGAGTTGCTTGTGAGGAATGGGTTGATCCATTTTTATGCT GATCGTGGTTGGTTGAAACATGCGCGCGAGGTGTTTGATGAAAGTTCTCTAAAGGATGTTGTTACTTGGACCACGATGAT TGATGGGTATGCGAGCCGTAATTGTTCGGAATTGGCTATGGAGCTGTTCAATTTGATGTTGCGCGGTGATGTTGAGCCGA ATGAGGTGACGCTGATTGCGGTGCTTTCGGCGTGCTCTCAGATGGGTGACATTGAAATGGGGAGAAGAGTTCATGAAAAC ATGGAAAAGAAGAATATGAGGTGTAGTTTAAATTTGCACAATGCCTTATTGGACATGTATGTGAAATGTGGCAGTTTGGT GGCTGCTAGAGAGCTTTTTGATAGAATGGAAACTAGGGATGTGTTCTCGTGGACTAGCATGGTTAACGGGTATGCCAAAT GTGGTGACTTGGAAAATGCAAGGAGGTTTCTCGATCAAACTCCTCACAAAAATGTCGTCTCCTGGAGTGCAATGCTTGCA GGATATTCTCAGAATAACAAACCCAAGGAATCGTTGAAGTTGTTTCATGAAATGATGGGGGCAGGTGTTGTTCCGGAGGA GCACGCCTTAGTGAGTGTGCTCTCTGCTTGTGGCCAGCTGAGTTGCTTGAATTTAGGTCATTGGATTCATCAACATTTTG TCATTGAAAAAGGGATGCACCCTAGTGTCACTCTGGCAAATGCAATTCTTGACATGTATGCCAAATGTGGAAGCATAGAG GCTGCAGCGGAAGTCTTCAATGCAATTTCAGAGAGGAACCTGGTTTCATGGAATTCTATGATTGCAGGGTATGCTGCTAA CGGTCAAGCAAAGCAAGCTGTCAACGTATTTGACCAGATGAGGTGCATGGGATTTAAGCCGGACGACATTACATTTGTGA ATTTGTTGACAGCCTGCAGTCATGGTGGCTTAATCTCAGAAGGCCAAGAATATTTTTACACCATGGAAAGAAACTATGGG ATAAAACCCAAAAGGGAACATTATTCATGCATGATTGATCTTCTGGGCCGAACTGGGCTCCTGAAAGAAGCTTACGAGTT GATAACGAGTATGCCAATGCAACCTTGTGAGGCTGCATGGGGTGCCCTTCTAAATGCTTGTAGAATGCATGGCAATGTTG AGCTGGCCAGGTTGTCGGCTTGTAATCTTCTAAGCTTGGATCCAGAAGATAGTGGAATATATGTTCTGCTGGCGAATATT TGTGCTAATGAGAGAAAATGGGGTGATGTGAAGAGGGTGCGAAGTTTGATGAGAGACAAGGGTGTGAAGAAGATTCCTGG TCATAGCTTAGTAGAGGTAGATGGTGAATTTAAAGAGTTTTTAGTGGCAGATGAATCACACCCTCAATCTGAGGAGATAT ATAAAGTACTAGATGAAATATTTTTGTCGTCAGAATTGGAAGACTATGACACTGACATATTTGTATAACCTTTATGTAAA CATATTCTTTAGTTTTAGTACTGAGATTTTTTCCTTTACACAAATATTTTTATAGGGCTTTAACCCTTAACAATATAAAC CCCATGAGAGGAACTATCATATTCATTGCATTATCTTTCTTACCACTTCTACCAGCTTTTTTATTTTAGGACGAAGTGGG AAAGAAAATGCTGAGTTTATGTGTGGAGTAGACGTGC
CDS sequence (LotjaGi1g1v0733100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAAATTTGCTGATCGTTGTTCCTCGCTCACTACGCGGAACCCCTAAGCAACCCAAATCACTGCATCATCTCCAACA GCGTCAACCACTGTCCTCTGCATCCAAATGGAACTCCACAACCAACGTCGTAATCACCAACCCAATCCTCGTGATCATGG AATCATGTTCCACCATGCGGCAACTGAAGCAGATTCATGCCCGCATGACCCGGACCGGTCTCATCACCCACACGTTCCCG GCGAGCAGGCTCCTCGCCTTCTGCGCGCTCGCCGATGCCGGAGACATTCGCTACGCCCACCTTCTCTTCCACCGCGTCAT CGACGAGCCCAACACTTTCATGTGGAACACCATGATCAGAGGATATCGGAAAGCCAGGAACCCCAACATTGCCTTCTCCT ACTTCCTCCGAATGCTGCGGCACCGCGTTGAAATGGACTGCAGAAGCTTCGTTTTCGCGCTAAAGGCGTGTGAGGAGCTA TCTGGGGATTTTGAGGGGGAATCAGTGCATTGCGTTGTGAGGAAACTGGGGTTTGATTCGGAGTTGCTTGTGAGGAATGG GTTGATCCATTTTTATGCTGATCGTGGTTGGTTGAAACATGCGCGCGAGGTGTTTGATGAAAGTTCTCTAAAGGATGTTG TTACTTGGACCACGATGATTGATGGGTATGCGAGCCGTAATTGTTCGGAATTGGCTATGGAGCTGTTCAATTTGATGTTG CGCGGTGATGTTGAGCCGAATGAGGTGACGCTGATTGCGGTGCTTTCGGCGTGCTCTCAGATGGGTGACATTGAAATGGG GAGAAGAGTTCATGAAAACATGGAAAAGAAGAATATGAGGTGTAGTTTAAATTTGCACAATGCCTTATTGGACATGTATG TGAAATGTGGCAGTTTGGTGGCTGCTAGAGAGCTTTTTGATAGAATGGAAACTAGGGATGTGTTCTCGTGGACTAGCATG GTTAACGGGTATGCCAAATGTGGTGACTTGGAAAATGCAAGGAGGTTTCTCGATCAAACTCCTCACAAAAATGTCGTCTC CTGGAGTGCAATGCTTGCAGGATATTCTCAGAATAACAAACCCAAGGAATCGTTGAAGTTGTTTCATGAAATGATGGGGG CAGGTGTTGTTCCGGAGGAGCACGCCTTAGTGAGTGTGCTCTCTGCTTGTGGCCAGCTGAGTTGCTTGAATTTAGGTCAT TGGATTCATCAACATTTTGTCATTGAAAAAGGGATGCACCCTAGTGTCACTCTGGCAAATGCAATTCTTGACATGTATGC CAAATGTGGAAGCATAGAGGCTGCAGCGGAAGTCTTCAATGCAATTTCAGAGAGGAACCTGGTTTCATGGAATTCTATGA TTGCAGGGTATGCTGCTAACGGTCAAGCAAAGCAAGCTGTCAACGTATTTGACCAGATGAGGTGCATGGGATTTAAGCCG GACGACATTACATTTGTGAATTTGTTGACAGCCTGCAGTCATGGTGGCTTAATCTCAGAAGGCCAAGAATATTTTTACAC CATGGAAAGAAACTATGGGATAAAACCCAAAAGGGAACATTATTCATGCATGATTGATCTTCTGGGCCGAACTGGGCTCC TGAAAGAAGCTTACGAGTTGATAACGAGTATGCCAATGCAACCTTGTGAGGCTGCATGGGGTGCCCTTCTAAATGCTTGT AGAATGCATGGCAATGTTGAGCTGGCCAGGTTGTCGGCTTGTAATCTTCTAAGCTTGGATCCAGAAGATAGTGGAATATA TGTTCTGCTGGCGAATATTTGTGCTAATGAGAGAAAATGGGGTGATGTGAAGAGGGTGCGAAGTTTGATGAGAGACAAGG GTGTGAAGAAGATTCCTGGTCATAGCTTAGTAGAGGTAGATGGTGAATTTAAAGAGTTTTTAGTGGCAGATGAATCACAC CCTCAATCTGAGGAGATATATAAAGTACTAGATGAAATATTTTTGTCGTCAGAATTGGAAGACTATGACACTGACATATT TGTATAA
Protein sequence (LotjaGi1g1v0733100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKNLLIVVPRSLRGTPKQPKSLHHLQQRQPLSSASKWNSTTNVVITNPILVIMESCSTMRQLKQIHARMTRTGLITHTFP ASRLLAFCALADAGDIRYAHLLFHRVIDEPNTFMWNTMIRGYRKARNPNIAFSYFLRMLRHRVEMDCRSFVFALKACEEL SGDFEGESVHCVVRKLGFDSELLVRNGLIHFYADRGWLKHAREVFDESSLKDVVTWTTMIDGYASRNCSELAMELFNLML RGDVEPNEVTLIAVLSACSQMGDIEMGRRVHENMEKKNMRCSLNLHNALLDMYVKCGSLVAARELFDRMETRDVFSWTSM VNGYAKCGDLENARRFLDQTPHKNVVSWSAMLAGYSQNNKPKESLKLFHEMMGAGVVPEEHALVSVLSACGQLSCLNLGH WIHQHFVIEKGMHPSVTLANAILDMYAKCGSIEAAAEVFNAISERNLVSWNSMIAGYAANGQAKQAVNVFDQMRCMGFKP DDITFVNLLTACSHGGLISEGQEYFYTMERNYGIKPKREHYSCMIDLLGRTGLLKEAYELITSMPMQPCEAAWGALLNAC RMHGNVELARLSACNLLSLDPEDSGIYVLLANICANERKWGDVKRVRSLMRDKGVKKIPGHSLVEVDGEFKEFLVADESH PQSEEIYKVLDEIFLSSELEDYDTDIFV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 32 | 209 | 178 | 6.2E-17 | ||
| PANTHER | 49 | 158 | 110 | 4.0E-125 | – | |
| ProSiteProfiles | 111 | 145 | 35 | 9.953 | ||
| Pfam | 113 | 142 | 30 | 2.1E-5 | ||
| TIGRFAM | 114 | 147 | 34 | 7.0E-6 | ||
| PANTHER | 150 | 278 | 129 | 4.0E-125 | – | |
| ProSiteProfiles | 181 | 211 | 31 | 5.283 | ||
| SUPERFAMILY | 184 | 338 | 155 | 2.24E-6 | ||
| Gene3D | 210 | 281 | 72 | 2.1E-11 | ||
| Pfam | 211 | 258 | 48 | 2.8E-11 | ||
| ProSiteProfiles | 212 | 246 | 35 | 11.367 | ||
| TIGRFAM | 214 | 248 | 35 | 4.3E-8 | ||
| ProSiteProfiles | 247 | 281 | 35 | 9.021 | ||
| ProSiteProfiles | 282 | 312 | 31 | 8.374 | ||
| Gene3D | 282 | 394 | 113 | 1.5E-28 | ||
| PANTHER | 285 | 325 | 41 | 4.0E-125 | – | |
| TIGRFAM | 286 | 314 | 29 | 1.4E-4 | ||
| Pfam | 287 | 313 | 27 | 8.3E-4 | ||
| ProSiteProfiles | 313 | 343 | 31 | 9.514 | ||
| TIGRFAM | 315 | 339 | 25 | 0.003 | ||
| Pfam | 315 | 339 | 25 | 1.7E-4 | ||
| PANTHER | 322 | 399 | 78 | 4.0E-125 | – | |
| Pfam | 343 | 390 | 48 | 1.5E-7 | ||
| ProSiteProfiles | 344 | 378 | 35 | 12.408 | ||
| TIGRFAM | 346 | 378 | 33 | 4.0E-7 | ||
| ProSiteProfiles | 379 | 414 | 36 | 5.174 | ||
| PANTHER | 395 | 611 | 217 | 4.0E-125 | – | |
| Gene3D | 395 | 512 | 118 | 4.6E-27 | ||
| ProSiteProfiles | 415 | 445 | 31 | 7.432 | ||
| ProSiteProfiles | 446 | 480 | 35 | 12.902 | ||
| Pfam | 446 | 493 | 48 | 5.8E-13 | ||
| TIGRFAM | 448 | 481 | 34 | 9.3E-9 | ||
| ProSiteProfiles | 481 | 516 | 36 | 7.541 | ||
| ProSiteProfiles | 517 | 551 | 35 | 7.881 | ||
| Pfam | 520 | 545 | 26 | 0.0052 | ||
| ProSiteProfiles | 583 | 617 | 35 | 7.695 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0733100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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