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LotjaGi1g1v0733900.1

Overview

Field Value
Gene ID LotjaGi1g1v0733900
Transcript ID LotjaGi1g1v0733900.1
Lotus japonicus genome version Gifu v1.2
Description mRNA-decapping enzyme-like protein; TAIR: AT1G08370.1 decapping 1; Swiss-Prot: sp|Q9SJF3|DCP1_ARATH mRNA-decapping enzyme-like protein; TrEMBL-Plants: tr|A0A151S1B1|A0A151S1B1_CAJCA mRNA-decapping enzyme-like protein; Found in the gene: LotjaGi1g1v0733900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:130728770..130735223) extracted from Lotus japonicus Gifu genome v1.2.

GTCTTTCGTGAAGCCTTGAAATACCTATGGAAATCTTTTTCTAAATCTCAGGACTCGGTAGTTTAAGCTTTAAAAAGTGA TTTATTAGAGAAAAAATTACAAATTAAAAAAAATCACGAATTATTTATTGTACTAATAATTTTCTTCAAAGAGAAAAAAA AGCCCACCTCCAAGTCCAAATTGTAAATAGAGTATTTTGGTCTTGTTGAATCGGGTCGACATTGAAATTTGAATTCATTG TCGTCGATTGTTCAAGTCAAGTAGATTCTTCAGAGAAGAGTGAAGAGTGAGTAAGACTCACGATTCAACTCAACTCAACT CAAGTCTTTGATCTGCGTCGGAACGAAACAACAAGCAAGTCGAAAATCTCCAGTTTTGAGGGTTCATCTGAAGAAATGTC TCAGAAGAAATTGACGCCGAATCTGGATCGCCAAAGCACCAAGGTGCTCAATCTCACGGTGCTCCGGCGAATGGATCCGT TCATCGACGAGATCCTCTTCACCGCCGCACATGTCTCTCTGTACGACTTCAACATCGAAAGCAACCAGTGGGTTCGTTCT TCGTTCTTTGTTCTTTGTTCTTTCCCTCCCTTTCTTTTCACTCTTCACTTCACCCTCTTATATTCACTTCTTCTCGTTTG CAGAGTCGCAAGAATGTTGAAGGATCTCTCTTCGTTGTCCAAAGGTAAATCAACAATACTCTCTCTCTCTCTCTGTAATC AACAATACATACATTTGGATCTTTAACCGATTTTCAAGATTTGATTTGATTTGATTTTTCAGGAACCCGCAAGTGAAACC AGAGTTTCAGTTTATCGTCATGAATCGAAGAAATACAGGTTCTGATTTGTATGTTTACTAGTAGATTGCCAGTTAGGTAT AATTTATTGACAAATCTGAAGGTATAGTTTGCTACACATCTGGAAATATATATATATATATATATATATATATATATTGT ATGTATGTATATATATATAATGTACTCTAGTAATGTAAATGGAAGGAAATTAGTGAAAAATACGAGCCGATAAGGAGGAG AAACCCCGAGGCATTACCCGAAAAACAGAAAGATGATATGGTGCCCTCCCTATGTGATTCTCCTCCCTTCTCTGTGTTAT GAAATATCCGCCATGCCGCTGCCATGGCGGCTTTTTGGCCTTACGCCATGGCCGATATCGCACCATTTCCGCCATTATTT GTCATGTATGGTGGGATTTCGGCTTTCCACCATGACCCACCATCCGTGATTAACAACTAAAATGAGGAAGTTACTTTAGA TGGTAAAGTAAGATATCACAATCATTGATTTAGATTTTTGTTGAAATTTTAAAAACACTATATTGTTATACATATGCAAG TATATGATCACAATGTCAACTGTTGATTTAAAATCAATGGTTGGTGATGATTTACTTTACCATCTAAAGTAACTTTCTCA TTTTGGAGAAGTCAAACCCCTCTATTTTTGTTCATTTCCCCTTTTTCTCTTTTATGTTACTAACTCCCTTTGCTTATCCC CCCACTCCCCACTCACACTAGCCCCTTTTCCTACTTAGGACGTAGGGGAGTAAACTTGTAAGACTTAGTGGTTGGGGTAA CCCTTCAATGAAAGCACATCAACTTCTTCTAAAGTACATCCACCATGCAATTTGTCTGTGATGTTATTTACTTATTTTCT TCAAATGCCTCCCTTCTTCATAATTCAAATAAGTTTTACGGGTAGTTTTTTTAATTGTTTGGAGCTAATTGTTGCTGTAA GTAACATATGCCGTTCTTGGAGATGATAAATTAATTATTGCGATATTGAAAACAGATTTATTATTTAGAGTGAGAGTGTC ATGAATAACTTTCTCAAAAACTTAACTGTTATGCTTCACACATAATGGGGTTTTATAATTCTGACATATTTCTTGACAGA TAACCTAAAGGAGAACCTATTGGATTTTGAGTACGAACTTAAAAAACCATACTTGTTATATAGGAATGCAAAGCAAGAAG TTAATGGTATATGGTTTTACAACCCAGATGAATGTGAAGAAGTTGGAAATCTCTTTAATAGGTATGGTGATTTTCTCCAG TCAAGTTATTTATGCAGTGTTTTTAAATGCTTGATTATGTTCAAACTTTTAGTGGCTAGATGCTTATATCTAATCTGGAC TAAGACTTCCTCCTGCTTGTTTTCATGTTTTTTAGTAATGTACCGTATGTAGTTGATATTCAGGCTGCTTATCCGCAAGT AATATGTGTTCATTTTTTCCCTTCAATTTTCAGGATAATTGATGAATACCCAAAGGCACCTCCAAGTACAATAATGCCTT CTAGCAATAGGTAAGGATTTTTAGAAAGCTTATAAAATCATTTGACTTTATAAAATCTCAAAATCTTTTTTTAAAAAGCT TATAAAATCTAAATTTGTTTCTATTGTTATCTCTTTTCATGCCTTTTCGGATAACTTCTCTTTGTAAATGTTACTTTCTA TCGTAGTGTGCTCTCTACATATTAATGATTCTAAACAGCGTTGCTTTTAGTATTCTGTTTGCGAAGAAACTTGTGATATC AAACTAAGATATAACCTTCTTTGATGAAGTGTTTCATTTTAAGGCCTATAACTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTATATATATATATATATATATATATATATATATATATATATCACCTTCCCCTGGTTGTAATTGCCTGTTGAGTGTGCT TGTTCAGAATTTAAACTATTTATTTTGTTATCTTATTATTCCCACTTAATTACCTCTTCTTTTTTATTAATAAGTGATTA TTGTTGTGTGGCGGCATGGCTTATGCCTGATGTTTTTATGTACTGTAGTGAGTTTGAGGAGCTTGAGCCAGTGTCAATTA TAAGAGAAAGCCTCCTAGAGTCATCGTCAGCTGCTGCTTCTGCAAATACTCCTGAAGATTATGTTTTCATTAACTCCTTG AACGTATGTAATTTAGTTTTATGCCACTTTTCTCTACTTTTTGATAAATACTTCTATAATGTCAATTCTGTGTTTTTGTT TCTATTGTATGATATATGTGGCTTTACAATTTTCTGAATTCAATTGTTGCAGGCATCCAAGGTTACTGGAAATTATGCTT CGAGTGTAGAAAGTTTTGGACGGCCCTACCATTCTGCAACTGTCACTTCTACTGTCCCCAATGGTTTATTCACTCCTGCA CCTTCTGTACAAATACCATCTGCCTCTCATTTAGCTTCATCTGCCTCTCTTGAAACAATCAACATTGGCAATCAAGTCAC TAAACTTGTTAACCCTTCTACTTTTCTTGCATCCAACTCTTCATCTTCACTGATAAGTTCTCGTATACTTTCGTCTGTGC CACCTAATGCAGCTGTTCATCATCCCCTGATACTGCCAAACCAATACGGCACTCCAGTTTTTCAACACTTTCCACCACCT AATCCTCCTCTATCTCTTAACCCTATCCCTAGTCCCACACCTAATAGACCTGTTATCAGCAGAGATAAAGTCCGTGATGC ACTTCTATCACTGGTTCAGGTACTTCTTGATTTTACCATCTTTTGTTTTGTTCACTTAAGTTTATTCGCAATTAATAATT TAATTATATATTTTTTATTCAGTTTTTTTACTATTTTTGGAGGGGGTAAAATAAAGGAAAAGACAGAAGTAAAGGCTAAT ATGTTCTAGTGTTACCGTCAATGAGTGTTTAACATTAGCTGGTTTTATAATTCCAATATAAAATGAATCTCTACTTTGTT GGAGTGATGGCATAGCAATCTTATCACTTTAGTTTGAATTTTAAATTTGAATTTATTTGCATTTAAACTCTTTCGTATTG CTTTAAATATATGTTTATGTACATTGGATGTGTGTGGTTAAAAGTAGAACATAATTTAATACATTATTAAAACTCTTTAT GGTACTGGATATTTGGAAGTCCTATTGATTCACTAGATCTTTGAAATGAGTGAGAAGTGAATTCATTTGACATTGCCTGT TTCCATTTTTGGCTCTATAGAGCTTGTGATACACATGTAGGTTCAATAAAAATTTTAAGAGGATATTTCCTGATTGTTTT AAGCTGTTTGGATTTGAATCAGCAAATATTCTCTTCAAAATTTGGTGCTGTAGCTTGATATAAGATTGCTTTGCACCCAA TGAATTGGGAAGTTAAGTTCTTTGGGGAATGGGGAGAGGAGGGGATATTGTTGGAGACTTGATTTGAGGAATTTAGATTT GTAAAAATCTGAAGGAGAGAAAGTTGGATGAGATAAGGTGCATGGGTTTGGGGATGTAATTTGTGTTGATAGGTGAAAAG GTTGTTTAGATGGATGGTAGTTATTAGGTACCAGAAATTACAGAGAAAAGTGATTTTGGAGAAAAGAAAATATGTTGTAT TGAATGACCAAGGATCCTGGAAATCATCAGATCCTGGAATTGAAACAATTACAAAGAGCAAAGTAAACAGCAGTAGTCAA TTTCAAGAGTGCCTATTCTCTCCCAATTTTAACCCAGTTCACCTTTCCCTCTCCCCTTTTCCCATATTTATACACCCCCA TTCTCTCTCAATCACAACCAATTCAGTTACAACAGGGCCTACTCTCCTGCTGCCTCCTCATCCATGTGCTGATTCAGTGC ATCACACCTCTTCCTCCTTACATAAACCTTATAGTGATCTTGGGCCTTGCAATAGTGCCCATAACAGTAGTAACAAGTAA GTTAAGTAGGAAAGGTGGAAGTGGTAGATGAGATAAAGTTAAAAAAGAGTAAGGATTTGGTTTGGTCCCATGAAAGTTGA CTGTTGTGAGACGAATTAAAAATTGAATTTTGAGATGCATATTGATGTGCCTTAGCCGAGAGTTCTAGAGATTTTGTAGA ATGTGTCAAAGATGAGGTAGGGGAGAGGAAAAATATCTTCAACAAAAGCAATGAGAGCTGTGAGGGTGTGAAGAGAGCTT GAAAGTCGTGATACAAATAGGCACTTTGGGTTATGCTTTGCTATAGCCTACAAAATTGTATGTTGGGATTTTTTTTTTTT TAAAGTTGTGTATAGATGGCTAACAAGGGTAACAAAGATAACAAAAAATTAGGTGCACAGTAAAAGTGCCTATTAGGTGC ACATTAATAAGAATTCCGTAAGCTGTCTTTATATTTATGATGAAGAAGACATCTGCAGTTTCAACTGTGTTGATATTTCC GTCCAGACTTCATAGAAACCATTATGTTCAAGAGTGTGAGGTAGAGCTGTGAAGTCTGAAATACTGTGGGTCTAAAATAT GAACGCTGCTGAATGAGAGAGAGAGAGAGAGAGAGTGTGTTGTGTTTGTGTGTGTGTGTGTGTAACCCCTTCAACGTTAG ATCTCTTTATACTTTACAATAGAATTGAAGATTTGAAGTAACCGAATATAACAGATAGTGAAGTGATGAATGTGTGCTTT TCATTTTTACCATTTGTGTAATGCTTGCTATTTTTAACTTTCATTATTATTAATTTGACCTTCTAAATATTTCTCTACTA ATGGAATTTTCCTGTGCCAGGATGATCAATTCATTGACATGGTGTTCCAAAAGTTACTGAAGGTGAATCTTTCGTGAACA ATGGAATTTCGAAGGTTGGGTGAAAAAACTGCATGTAAAATTAGTTCTGTGTATAGTAGTTACGCTTTGACACAACTAAC AGGACCACAACATCACTTTTGCAACTTAGTATAGACAATCTGGCCCCTCTTGAGATCTGGCCACAACTTTACTTTATGTA GCTGTTAGCTGAGATCACTCTCAAGTGATGTCACTGGAGAGGATTTGAACCTGGTGAAATCCACAGTATACTATCAAATT ACAGAGTGCATTAATACACAATATTATCTTCCACCATCGAATTCATGCATGTATATGTGGACAGTTATCAAAGAAAGCAA TGATGAAGTTGATGTATTGATAACTGTCCATTTGTACACAAAATTTTATGGTGAAAACATTGTGTATTCTTACACTGCAA CTCCAGTGTTGAAGAAGTAGCCATCTGTAATGGTTGAATGGCCTTGAATAAGTGCGTTGAATGTCAGTTTCCCCTTCCGC TTGAATAAGAGATTGTGTTTTTTGTACTAAGAACATGGAGGTTCAATCGATTTTCTTCGGATCAAATCTTTTATTTTGGT ATTAGCTAGTGATGTTATCAGTATTGTGTGAAACTCATGCTCGGCAATCGGCATGCATTCGGATACAAATGAATGGAATT TACCTCTGATAAATTTCTTTGCTTTCTAAAACTAAATTAAGGTGGTAGGCAGTAATAATTTAAGTACTGTACCTGTGGTG GCAGTAACTTGGTTTTACTCAGATCACCTTCGAATTATGTTTTTCTAGCTTGCAAAACTAAACTACTGTGCTACCTGTAT ATTATACTTTATCAGAGTGGGGAAATTTTGGAAAGTGCACACAGTCAATTCTCT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0733900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCTCAGAAGAAATTGACGCCGAATCTGGATCGCCAAAGCACCAAGGTGCTCAATCTCACGGTGCTCCGGCGAATGGA TCCGTTCATCGACGAGATCCTCTTCACCGCCGCACATGTCTCTCTGTACGACTTCAACATCGAAAGCAACCAGTGGAGTC GCAAGAATGTTGAAGGATCTCTCTTCGTTGTCCAAAGGAACCCGCAAGTGAAACCAGAGTTTCAGTTTATCGTCATGAAT CGAAGAAATACAGATAACCTAAAGGAGAACCTATTGGATTTTGAGTACGAACTTAAAAAACCATACTTGTTATATAGGAA TGCAAAGCAAGAAGTTAATGGTATATGGTTTTACAACCCAGATGAATGTGAAGAAGTTGGAAATCTCTTTAATAGGATAA TTGATGAATACCCAAAGGCACCTCCAAGTACAATAATGCCTTCTAGCAATAGTGAGTTTGAGGAGCTTGAGCCAGTGTCA ATTATAAGAGAAAGCCTCCTAGAGTCATCGTCAGCTGCTGCTTCTGCAAATACTCCTGAAGATTATGTTTTCATTAACTC CTTGAACGCATCCAAGGTTACTGGAAATTATGCTTCGAGTGTAGAAAGTTTTGGACGGCCCTACCATTCTGCAACTGTCA CTTCTACTGTCCCCAATGGTTTATTCACTCCTGCACCTTCTGTACAAATACCATCTGCCTCTCATTTAGCTTCATCTGCC TCTCTTGAAACAATCAACATTGGCAATCAAGTCACTAAACTTGTTAACCCTTCTACTTTTCTTGCATCCAACTCTTCATC TTCACTGATAAGTTCTCGTATACTTTCGTCTGTGCCACCTAATGCAGCTGTTCATCATCCCCTGATACTGCCAAACCAAT ACGGCACTCCAGTTTTTCAACACTTTCCACCACCTAATCCTCCTCTATCTCTTAACCCTATCCCTAGTCCCACACCTAAT AGACCTGTTATCAGCAGAGATAAAGTCCGTGATGCACTTCTATCACTGGTTCAGGATGATCAATTCATTGACATGGTGTT CCAAAAGTTACTGAAGGTGAATCTTTCGTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0733900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSQKKLTPNLDRQSTKVLNLTVLRRMDPFIDEILFTAAHVSLYDFNIESNQWSRKNVEGSLFVVQRNPQVKPEFQFIVMN RRNTDNLKENLLDFEYELKKPYLLYRNAKQEVNGIWFYNPDECEEVGNLFNRIIDEYPKAPPSTIMPSSNSEFEELEPVS IIRESLLESSSAAASANTPEDYVFINSLNASKVTGNYASSVESFGRPYHSATVTSTVPNGLFTPAPSVQIPSASHLASSA SLETINIGNQVTKLVNPSTFLASNSSSSLISSRILSSVPPNAAVHHPLILPNQYGTPVFQHFPPPNPPLSLNPIPSPTPN RPVISRDKVRDALLSLVQDDQFIDMVFQKLLKVNLS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR16290:SF23
2 355 354 2.3E-180 –
PANTHER
PTHR16290
2 355 354 2.3E-180
IPR010334
Gene3D
G3DSA:2.30.29.30
5 137 133 7.8E-44
IPR011993
Pfam
PF06058
16 131 116 4.4E-39
IPR010334
CDD
cd13182
18 134 117 2.66097E-54 –
SUPERFAMILY
SSF50729
18 139 122 2.39E-43 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000290
Biological process Deadenylation-dependent decapping of nuclear-transcribed mRNA Cleavage of the 5'-cap of a nuclear mRNA triggered by shortening of the poly(A) tail to below a minimum functional length.
Subterm of
Part of
GO:0008047
Molecular function Enzyme activator activity Binds to and increases the activity of an enzyme.
Subterm of
GO:0043085
Biological process Positive regulation of catalytic activity Any process that activates or increases the activity of an enzyme.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0733900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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